Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35560 * 125.82766 * 2 1 4 4 N 1.35401 * 107.16066 * 179.73719 * 3 2 1 5 5 H 0.96998 * 126.44015 * 180.02562 * 4 3 2 6 6 C 1.36665 * 107.12458 * 0.02562 * 4 3 2 7 7 C 1.47404 * 125.86883 * 179.97438 * 6 4 3 8 8 O 1.21614 * 119.99987 * 353.48353 * 7 6 4 9 9 N 1.34775 * 120.00392 * 173.48173 * 7 6 4 10 10 C 1.46507 * 119.99890 * 3.36133 * 9 7 6 11 11 C 1.46504 * 120.00310 * 183.35741 * 9 7 6 12 12 C 1.52999 * 109.46890 * 90.00230 * 11 9 7 13 13 N 1.46497 * 109.47359 * 179.97438 * 12 11 9 14 14 C 1.46501 * 120.00277 * 270.00396 * 13 12 11 15 15 C 1.34779 * 119.99894 * 89.99721 * 13 12 11 16 16 O 1.21282 * 119.99690 * 0.02562 * 15 13 12 17 17 C 1.50696 * 120.00298 * 180.02562 * 15 13 12 18 18 S 1.81000 * 109.47271 * 180.02562 * 17 15 13 19 19 C 1.76206 * 99.99979 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99820 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99891 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00332 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47462 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47206 * 120.00289 * 23 21 19 26 26 H 1.48504 * 109.47187 * 240.00393 * 23 21 19 27 27 N 1.31615 * 108.26910 * 359.97438 * 6 4 3 28 28 H 1.09000 * 109.47227 * 89.99595 * 1 2 3 29 29 H 1.08994 * 109.47480 * 209.99870 * 1 2 3 30 30 H 1.09001 * 109.46435 * 329.99692 * 1 2 3 31 31 H 1.07996 * 126.42087 * 359.70696 * 3 2 1 32 32 H 1.09006 * 109.46994 * 84.09745 * 10 9 7 33 33 H 1.08993 * 109.46961 * 204.09904 * 10 9 7 34 34 H 1.08997 * 109.46853 * 324.10021 * 10 9 7 35 35 H 1.08997 * 109.47305 * 210.00273 * 11 9 7 36 36 H 1.08992 * 109.47144 * 330.00485 * 11 9 7 37 37 H 1.08997 * 109.47182 * 300.00118 * 12 11 9 38 38 H 1.09009 * 109.47131 * 60.00017 * 12 11 9 39 39 H 1.09003 * 109.47024 * 89.99450 * 14 13 12 40 40 H 1.09003 * 109.47056 * 209.99755 * 14 13 12 41 41 H 1.09001 * 109.46949 * 329.99606 * 14 13 12 42 42 H 1.08996 * 109.47076 * 300.00977 * 17 15 13 43 43 H 1.09004 * 109.46596 * 60.00129 * 17 15 13 44 44 H 0.96998 * 120.00438 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0059 5 1 4.3789 1.2206 0.0078 6 6 3.5465 -0.7004 0.0089 7 6 4.7173 -1.5959 0.0149 8 8 5.8364 -1.1345 -0.1019 9 7 4.5477 -2.9261 0.1498 10 6 3.1968 -3.4893 0.2165 11 6 5.7141 -3.8090 0.2297 12 6 6.1308 -3.9722 1.6928 13 7 7.2968 -4.8555 1.7729 14 6 7.1118 -6.3014 1.9196 15 6 8.5398 -4.3380 1.7114 16 8 8.6929 -3.1410 1.5902 17 6 9.7392 -5.2466 1.7932 18 16 11.2524 -4.2596 1.6833 19 6 12.4603 -5.5372 1.8011 20 1 12.1494 -6.5663 1.9055 21 6 13.8110 -5.2212 1.7587 22 7 14.1899 -3.9671 1.6310 23 14 15.0915 -6.5755 1.8843 24 1 14.4115 -7.8886 2.0207 25 1 15.9309 -6.5782 0.6594 26 1 15.9500 -6.3364 3.0722 27 7 2.2860 -1.0792 0.0054 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.9713 2.1276 -0.0044 32 1 2.8133 -3.6341 -0.7936 33 1 3.2280 -4.4479 0.7342 34 1 2.5442 -2.8047 0.7582 35 1 5.4611 -4.7839 -0.1869 36 1 6.5379 -3.3747 -0.3364 37 1 6.3838 -2.9973 2.1094 38 1 5.3068 -4.4066 2.2590 39 1 7.0582 -6.7627 0.9335 40 1 7.9526 -6.7211 2.4719 41 1 6.1869 -6.4960 2.4626 42 1 9.7241 -5.7838 2.7415 43 1 9.7104 -5.9611 0.9705 44 1 15.1339 -3.7462 1.6018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721696054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = 6.559885 kcal Electronic energy + Delta-G solvation = -26500.117643 eV Core-core repulsion = 22580.819275 eV Total energy + Delta-G solvation = -3919.298368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.65812 -39.93362 -39.15045 -36.25020 -35.11461 -33.56919 -32.40438 -32.01529 -30.67494 -28.60274 -27.53219 -26.88703 -26.27609 -25.47072 -24.17566 -22.43136 -20.71409 -20.20293 -19.18856 -18.23729 -17.64539 -16.81903 -16.73010 -16.27574 -16.23367 -15.61625 -15.29134 -14.78629 -14.72300 -14.47678 -14.13247 -13.78097 -13.55694 -13.45447 -13.33400 -13.18291 -12.98581 -12.89372 -12.71114 -12.53502 -12.48233 -12.45066 -12.22415 -11.81853 -11.05839 -11.02861 -10.98892 -10.72867 -10.52993 -10.47221 -10.19485 -9.77100 -9.32954 -9.13880 -9.04952 -8.80798 -8.38709 -8.17761 -6.46702 -6.18954 -3.89282 1.05774 2.16616 2.21672 2.88186 3.07973 3.11817 3.18548 3.23124 3.30047 3.34318 3.66252 3.84073 4.22585 4.45209 4.63831 4.75703 4.82437 4.98293 5.02837 5.10182 5.12968 5.16047 5.30036 5.31028 5.33064 5.41932 5.47254 5.54430 5.56740 5.59179 5.68982 5.80137 5.81913 5.92419 5.96620 6.16161 6.17679 6.34187 6.66775 6.77618 7.02385 7.40279 7.54616 7.62291 7.87995 8.37871 8.61066 9.26192 10.88500 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.002004 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.604115 B =13971.284972 C =14814.082325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.007 4.007 3 C -0.024 4.024 4 N -0.522 5.522 5 H 0.433 0.567 6 C 0.156 3.844 7 C 0.596 3.404 8 O -0.520 6.520 9 N -0.591 5.591 10 C 0.071 3.929 11 C 0.101 3.899 12 C 0.107 3.893 13 N -0.625 5.625 14 C 0.081 3.919 15 C 0.529 3.471 16 O -0.504 6.504 17 C -0.149 4.149 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.438 5.438 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.186 0.814 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.461 2.916 -2.204 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 C -0.163 4.163 4 N -0.124 5.124 5 H 0.272 0.728 6 C -0.105 4.105 7 C 0.381 3.619 8 O -0.395 6.395 9 N -0.324 5.324 10 C -0.071 4.071 11 C -0.022 4.022 12 C -0.018 4.018 13 N -0.362 5.362 14 C -0.063 4.063 15 C 0.316 3.684 16 O -0.377 6.377 17 C -0.299 4.299 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.163 5.163 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.203 0.797 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.689 4.206 -2.455 30.086 hybrid contribution 1.184 -1.236 0.164 1.720 sum -28.505 2.970 -2.291 28.751 Atomic orbital electron populations 1.20051 0.86987 1.02959 1.02472 1.21013 0.97082 0.88232 1.07746 1.22751 0.82954 1.01120 1.09450 1.42910 1.09376 1.07570 1.52498 0.72761 1.22620 0.93679 0.82355 1.11892 1.16606 0.85593 0.81926 0.77788 1.90973 1.23774 1.75318 1.49393 1.47390 1.08349 1.05156 1.71545 1.22319 0.82184 0.99788 1.02851 1.21988 0.88306 0.93679 0.98257 1.21677 0.87645 0.96426 0.96068 1.47803 1.05458 1.07481 1.75443 1.21796 1.02739 0.80179 1.01564 1.20415 0.83367 0.89111 0.75461 1.90751 1.85039 1.15470 1.46402 1.23553 0.98922 1.02798 1.04677 1.85465 0.91564 1.10662 1.95822 1.22905 0.92751 0.94460 1.58123 0.90893 1.24994 0.97794 0.96241 0.94614 1.70031 1.16700 1.16883 1.46636 0.86119 0.80523 0.80949 0.77903 1.19622 1.20590 1.20590 1.70274 0.99161 1.29959 1.16864 0.91202 0.90918 0.91143 0.79729 0.92389 0.91697 0.87514 0.89920 0.88776 0.89575 0.90725 0.92728 0.90519 0.91405 0.89263 0.89243 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.42 36.01 0.38 0.04 16 2 C -0.01 -0.06 7.07 -83.00 -0.59 -0.65 16 3 C -0.02 -0.16 11.91 -16.93 -0.20 -0.36 16 4 N -0.52 -4.71 6.15 -10.78 -0.07 -4.78 16 5 H 0.43 3.29 8.96 -40.82 -0.37 2.92 16 6 C 0.16 1.80 7.67 -154.53 -1.18 0.62 16 7 C 0.60 8.30 7.67 -12.53 -0.10 8.20 16 8 O -0.52 -9.29 16.65 5.27 0.09 -9.20 16 9 N -0.59 -6.92 2.87 -182.85 -0.53 -7.45 16 10 C 0.07 0.60 9.60 59.85 0.57 1.17 16 11 C 0.10 1.26 5.73 -4.04 -0.02 1.24 16 12 C 0.11 1.38 5.77 -4.04 -0.02 1.36 16 13 N -0.62 -9.02 2.87 -181.57 -0.52 -9.55 16 14 C 0.08 0.81 10.29 59.85 0.62 1.43 16 15 C 0.53 10.47 7.69 -10.99 -0.08 10.38 16 16 O -0.50 -12.21 15.44 5.56 0.09 -12.12 16 17 C -0.15 -3.10 4.71 36.00 0.17 -2.93 16 18 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.10 5.49 -17.44 -0.10 2.01 16 22 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 23 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 N -0.44 -4.54 7.69 -7.50 -0.06 -4.60 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.19 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.41 8.03 -51.93 -0.42 -0.01 16 34 H 0.11 0.96 5.34 -51.93 -0.28 0.68 16 35 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.09 1.53 7.38 -51.93 -0.38 1.15 16 37 H 0.09 1.41 7.42 -51.93 -0.39 1.02 16 38 H 0.07 0.73 7.89 -51.92 -0.41 0.32 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 41 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 42 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 43 H 0.09 1.72 8.11 -51.91 -0.42 1.30 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -39.02 387.68 -8.21 -47.23 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.29 Total: 0.38 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.27 Total: 7.39 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.44 Total: -52.20 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.17 Total: -21.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.02 -8.21 -47.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721696054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.787 kcal (2) G-P(sol) polarization free energy of solvation -39.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds