Wall clock time and date at job start Sat Apr 11 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35560 * 125.82766 * 2 1 4 4 N 1.35401 * 107.16066 * 179.73719 * 3 2 1 5 5 H 0.96998 * 126.44015 * 180.02562 * 4 3 2 6 6 C 1.36665 * 107.12458 * 0.02562 * 4 3 2 7 7 C 1.47404 * 125.86883 * 179.97438 * 6 4 3 8 8 O 1.21614 * 119.99987 * 353.48353 * 7 6 4 9 9 N 1.34775 * 120.00392 * 173.48173 * 7 6 4 10 10 C 1.46507 * 119.99890 * 3.36133 * 9 7 6 11 11 C 1.46504 * 120.00310 * 183.35741 * 9 7 6 12 12 C 1.52999 * 109.46890 * 90.00230 * 11 9 7 13 13 N 1.46497 * 109.47359 * 179.97438 * 12 11 9 14 14 C 1.46501 * 120.00277 * 270.00396 * 13 12 11 15 15 C 1.34779 * 119.99894 * 89.99721 * 13 12 11 16 16 O 1.21282 * 119.99690 * 0.02562 * 15 13 12 17 17 C 1.50696 * 120.00298 * 180.02562 * 15 13 12 18 18 S 1.81000 * 109.47271 * 180.02562 * 17 15 13 19 19 C 1.76206 * 99.99979 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99820 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99891 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00332 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47462 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47206 * 120.00289 * 23 21 19 26 26 H 1.48504 * 109.47187 * 240.00393 * 23 21 19 27 27 N 1.31615 * 108.26910 * 359.97438 * 6 4 3 28 28 H 1.09000 * 109.47227 * 89.99595 * 1 2 3 29 29 H 1.08994 * 109.47480 * 209.99870 * 1 2 3 30 30 H 1.09001 * 109.46435 * 329.99692 * 1 2 3 31 31 H 1.07996 * 126.42087 * 359.70696 * 3 2 1 32 32 H 1.09006 * 109.46994 * 84.09745 * 10 9 7 33 33 H 1.08993 * 109.46961 * 204.09904 * 10 9 7 34 34 H 1.08997 * 109.46853 * 324.10021 * 10 9 7 35 35 H 1.08997 * 109.47305 * 210.00273 * 11 9 7 36 36 H 1.08992 * 109.47144 * 330.00485 * 11 9 7 37 37 H 1.08997 * 109.47182 * 300.00118 * 12 11 9 38 38 H 1.09009 * 109.47131 * 60.00017 * 12 11 9 39 39 H 1.09003 * 109.47024 * 89.99450 * 14 13 12 40 40 H 1.09003 * 109.47056 * 209.99755 * 14 13 12 41 41 H 1.09001 * 109.46949 * 329.99606 * 14 13 12 42 42 H 1.08996 * 109.47076 * 300.00977 * 17 15 13 43 43 H 1.09004 * 109.46596 * 60.00129 * 17 15 13 44 44 H 0.96998 * 120.00438 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0059 5 1 4.3789 1.2206 0.0078 6 6 3.5465 -0.7004 0.0089 7 6 4.7173 -1.5959 0.0149 8 8 5.8364 -1.1345 -0.1019 9 7 4.5477 -2.9261 0.1498 10 6 3.1968 -3.4893 0.2165 11 6 5.7141 -3.8090 0.2297 12 6 6.1308 -3.9722 1.6928 13 7 7.2968 -4.8555 1.7729 14 6 7.1118 -6.3014 1.9196 15 6 8.5398 -4.3380 1.7114 16 8 8.6929 -3.1410 1.5902 17 6 9.7392 -5.2466 1.7932 18 16 11.2524 -4.2596 1.6833 19 6 12.4603 -5.5372 1.8011 20 1 12.1494 -6.5663 1.9055 21 6 13.8110 -5.2212 1.7587 22 7 14.1899 -3.9671 1.6310 23 14 15.0915 -6.5755 1.8843 24 1 14.4115 -7.8886 2.0207 25 1 15.9309 -6.5782 0.6594 26 1 15.9500 -6.3364 3.0722 27 7 2.2860 -1.0792 0.0054 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.9713 2.1276 -0.0044 32 1 2.8133 -3.6341 -0.7936 33 1 3.2280 -4.4479 0.7342 34 1 2.5442 -2.8047 0.7582 35 1 5.4611 -4.7839 -0.1869 36 1 6.5379 -3.3747 -0.3364 37 1 6.3838 -2.9973 2.1094 38 1 5.3068 -4.4066 2.2590 39 1 7.0582 -6.7627 0.9335 40 1 7.9526 -6.7211 2.4719 41 1 6.1869 -6.4960 2.4626 42 1 9.7241 -5.7838 2.7415 43 1 9.7104 -5.9611 0.9705 44 1 15.1339 -3.7462 1.6018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721696054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:29 Heat of formation + Delta-G solvation = -21.797103 kcal Electronic energy + Delta-G solvation = -26501.347294 eV Core-core repulsion = 22580.819275 eV Total energy + Delta-G solvation = -3920.528019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.35732 -41.11497 -40.43076 -37.40946 -36.34230 -34.59652 -34.22852 -32.87174 -31.74782 -29.91025 -28.20901 -27.73790 -27.70634 -27.12749 -25.18625 -23.34779 -21.36590 -21.04837 -20.66821 -19.56466 -19.06313 -18.12791 -17.80834 -17.30650 -17.20127 -16.90055 -16.79480 -16.54417 -15.91031 -15.55055 -15.16390 -14.93205 -14.77081 -14.47274 -14.36972 -14.11362 -14.09604 -13.95070 -13.57550 -13.54766 -13.34829 -13.27353 -13.17953 -13.09740 -12.91889 -12.91405 -12.60671 -12.09830 -11.70122 -11.55385 -11.21155 -11.16844 -10.97925 -10.87211 -10.26499 -10.18293 -9.61538 -9.35698 -8.69464 -8.35287 -6.14502 0.24838 1.20496 1.34994 1.41134 1.48159 1.52536 1.57344 1.59046 2.07868 2.21490 2.26489 2.44613 2.98784 3.06473 3.26072 3.65898 3.79378 3.96465 3.97802 4.11387 4.20667 4.26737 4.34837 4.37353 4.41016 4.47699 4.62888 4.71039 4.77386 4.86567 4.89436 4.97966 5.00171 5.01738 5.08007 5.20285 5.38843 5.40906 5.56067 5.72995 6.09268 6.11669 6.19109 6.24764 6.66555 6.94542 7.05484 7.13914 8.74425 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.002004 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.604115 B =13971.284972 C =14814.082325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.028 4.028 3 C -0.001 4.001 4 N -0.523 5.523 5 H 0.436 0.564 6 C 0.115 3.885 7 C 0.587 3.413 8 O -0.579 6.579 9 N -0.587 5.587 10 C 0.072 3.928 11 C 0.108 3.892 12 C 0.111 3.889 13 N -0.609 5.609 14 C 0.069 3.931 15 C 0.524 3.476 16 O -0.563 6.563 17 C -0.119 4.119 18 S -0.162 6.162 19 C -0.542 4.542 20 H 0.085 0.915 21 C 0.010 3.990 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.254 1.254 25 H -0.275 1.275 26 H -0.274 1.274 27 N -0.437 5.437 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.228 0.772 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.481 0.344 -1.767 33.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.162 4.162 3 C -0.141 4.141 4 N -0.124 5.124 5 H 0.276 0.724 6 C -0.144 4.144 7 C 0.374 3.626 8 O -0.458 6.458 9 N -0.318 5.318 10 C -0.069 4.069 11 C -0.016 4.016 12 C -0.013 4.013 13 N -0.344 5.344 14 C -0.072 4.072 15 C 0.312 3.688 16 O -0.441 6.441 17 C -0.270 4.270 18 S 0.065 5.935 19 C -0.690 4.690 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.824 3.176 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.199 1.199 27 N -0.163 5.163 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.244 0.756 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -32.788 1.548 -2.011 32.886 hybrid contribution 1.857 -0.399 0.026 1.900 sum -30.931 1.149 -1.985 31.016 Atomic orbital electron populations 1.20143 0.84597 1.04033 1.03267 1.21702 0.98648 0.87981 1.07833 1.23541 0.81626 1.02838 1.06103 1.43057 1.10498 1.06973 1.51917 0.72407 1.22197 0.93333 0.83093 1.15792 1.17056 0.85632 0.82908 0.76959 1.90933 1.26076 1.76429 1.52332 1.47509 1.09406 1.04521 1.70365 1.22474 0.80032 1.00856 1.03498 1.21858 0.87496 0.94911 0.97313 1.21758 0.87974 0.94728 0.96852 1.47775 1.03837 1.09756 1.72992 1.22206 1.04762 0.76712 1.03508 1.20319 0.84916 0.88095 0.75475 1.90740 1.86072 1.17756 1.49520 1.23358 0.95362 1.01764 1.06565 1.85733 0.96732 1.14825 1.96228 1.23230 0.93123 0.94587 1.58084 0.89646 1.26190 1.00392 0.99052 0.93777 1.70209 1.17355 1.19615 1.47816 0.84858 0.77001 0.77743 0.78031 1.17716 1.19997 1.19926 1.70228 0.98727 1.31086 1.16216 0.90463 0.91126 0.88833 0.75553 0.91983 0.88529 0.87946 0.86150 0.93555 0.93803 0.86034 0.90627 0.90640 0.87411 0.87058 0.87183 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.42 71.24 0.74 0.29 16 2 C -0.03 -0.40 7.07 41.75 0.30 -0.10 16 3 C 0.00 -0.02 11.91 83.52 0.99 0.98 16 4 N -0.52 -9.49 6.15 -188.03 -1.16 -10.64 16 5 H 0.44 7.07 8.96 -92.71 -0.83 6.24 16 6 C 0.11 2.73 7.67 136.28 1.04 3.77 16 7 C 0.59 17.52 7.67 86.66 0.66 18.18 16 8 O -0.58 -22.94 16.65 -4.07 -0.07 -23.00 16 9 N -0.59 -13.79 2.87 -850.68 -2.44 -16.23 16 10 C 0.07 1.08 9.60 127.77 1.23 2.31 16 11 C 0.11 2.67 5.73 86.38 0.49 3.17 16 12 C 0.11 2.80 5.77 86.38 0.50 3.30 16 13 N -0.61 -16.79 2.87 -846.75 -2.43 -19.22 16 14 C 0.07 1.12 10.29 127.77 1.31 2.43 16 15 C 0.52 21.24 7.69 87.66 0.67 21.91 16 16 O -0.56 -29.25 15.44 -3.04 -0.05 -29.29 16 17 C -0.12 -4.97 4.71 71.23 0.34 -4.64 16 18 S -0.16 -9.45 20.57 -56.49 -1.16 -10.61 16 19 C -0.54 -31.68 9.50 67.95 0.65 -31.03 16 20 H 0.09 4.59 7.80 -2.91 -0.02 4.57 16 21 C 0.01 0.60 5.49 84.86 0.47 1.06 16 22 N -0.91 -57.67 13.22 21.65 0.29 -57.38 16 23 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 24 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 N -0.44 -8.74 7.69 -177.64 -1.37 -10.10 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.24 8.14 -2.39 -0.02 0.23 16 31 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.10 0.83 8.03 -2.39 -0.02 0.81 16 34 H 0.10 1.70 5.34 -2.39 -0.01 1.68 16 35 H 0.12 2.02 8.07 -2.39 -0.02 2.00 16 36 H 0.05 1.62 7.38 -2.39 -0.02 1.60 16 37 H 0.04 1.51 7.42 -2.39 -0.02 1.50 16 38 H 0.12 1.94 7.89 -2.38 -0.02 1.93 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.29 6.44 -2.39 -0.02 1.27 16 41 H 0.11 0.96 7.89 -2.39 -0.02 0.95 16 42 H 0.11 4.12 7.40 -2.40 -0.02 4.10 16 43 H 0.11 4.10 8.11 -2.39 -0.02 4.08 16 44 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -94.23 387.68 3.23 -91.00 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.20 Total: 17.48 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 9.40 Total: 21.63 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -7.11 Total: -113.58 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.11 Total: -52.30 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -9.45 SS G_CDS: -1.16 Total: -10.61 kcal Total: -94.23 3.23 -91.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721696054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.200 kcal (2) G-P(sol) polarization free energy of solvation -94.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds