Wall clock time and date at job start Sat Apr 11 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30938 * 122.90252 * 2 1 4 4 C 1.29430 * 117.35895 * 180.02562 * 3 2 1 5 5 S 1.70954 * 110.39385 * 359.71692 * 4 3 2 6 6 C 1.35658 * 122.89915 * 179.97438 * 2 1 3 7 7 C 1.46684 * 126.13329 * 0.02562 * 6 2 1 8 8 O 1.21688 * 119.99767 * 359.97438 * 7 6 2 9 9 N 1.34778 * 119.99759 * 180.02562 * 7 6 2 10 10 C 1.46503 * 119.99700 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47014 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47502 * 65.00049 * 11 10 9 13 13 C 1.53006 * 109.47127 * 184.99892 * 11 10 9 14 14 N 1.46902 * 109.47094 * 304.99270 * 11 10 9 15 15 C 1.46894 * 111.00496 * 298.95657 * 14 11 10 16 16 C 1.46904 * 111.00057 * 174.99757 * 14 11 10 17 17 C 1.50695 * 109.47170 * 190.00389 * 16 14 11 18 18 O 1.21292 * 120.00023 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00039 * 180.02562 * 17 16 14 20 20 C 1.37098 * 120.00260 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99750 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00127 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99869 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 0.02562 * 22 20 19 25 25 H 1.48509 * 109.46942 * 89.99804 * 24 22 20 26 26 H 1.48494 * 109.47174 * 209.99767 * 24 22 20 27 27 H 1.48497 * 109.46865 * 330.00006 * 24 22 20 28 28 H 1.09007 * 109.47232 * 270.00598 * 1 2 3 29 29 H 1.08998 * 109.46776 * 29.99972 * 1 2 3 30 30 H 1.08992 * 109.47312 * 150.00173 * 1 2 3 31 31 H 1.07995 * 124.80218 * 179.97438 * 4 3 2 32 32 H 0.96997 * 120.00085 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.47549 * 59.99317 * 10 9 7 34 34 H 1.08998 * 109.46987 * 299.99219 * 10 9 7 35 35 H 1.09001 * 109.47002 * 299.99574 * 13 11 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 13 11 10 37 37 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.46934 * 59.99737 * 15 14 11 39 39 H 1.08998 * 109.47599 * 179.97438 * 15 14 11 40 40 H 1.09002 * 109.47223 * 300.00009 * 15 14 11 41 41 H 1.09000 * 109.47030 * 310.00767 * 16 14 11 42 42 H 1.09004 * 109.46807 * 70.00452 * 16 14 11 43 43 H 0.97005 * 120.00256 * 0.02562 * 19 17 16 44 44 H 0.97008 * 120.00158 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9743 -0.0005 5 16 3.9447 -0.6781 0.0068 6 6 2.2439 -1.1390 0.0005 7 6 1.7190 -2.5087 0.0006 8 8 0.5172 -2.6997 0.0007 9 7 2.5678 -3.5556 0.0016 10 6 2.0436 -4.9237 0.0012 11 6 3.2080 -5.9160 0.0019 12 1 3.7657 -5.8213 0.9337 13 6 2.6642 -7.3406 -0.1243 14 7 4.0967 -5.6290 -1.1320 15 6 3.3842 -5.7717 -2.4087 16 6 5.2894 -6.4859 -1.0962 17 6 6.2856 -6.0033 -2.1187 18 8 6.0277 -5.0399 -2.8091 19 7 7.4632 -6.6420 -2.2661 20 6 8.3693 -6.2033 -3.1967 21 1 8.1396 -5.3454 -3.8115 22 6 9.5836 -6.8615 -3.3483 23 7 10.4523 -6.4406 -4.2400 24 14 9.9811 -8.3447 -2.2846 25 1 9.5102 -9.5798 -2.9616 26 1 11.4490 -8.4242 -2.0748 27 1 9.3000 -8.2093 -0.9721 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 4.2057 1.7974 -0.0010 32 1 3.5258 -3.4033 0.0020 33 1 1.4347 -5.0792 -0.8894 34 1 1.4329 -5.0790 0.8905 35 1 2.0048 -7.5536 0.7171 36 1 2.1067 -7.4354 -1.0560 37 1 3.4938 -8.0476 -0.1242 38 1 2.5460 -5.0755 -2.4366 39 1 4.0651 -5.5531 -3.2313 40 1 3.0126 -6.7918 -2.5054 41 1 5.7378 -6.4432 -0.1036 42 1 5.0053 -7.5137 -1.3226 43 1 7.6694 -7.4127 -1.7143 44 1 11.2999 -6.9004 -4.3461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725154968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:51 Heat of formation + Delta-G solvation = -8.402024 kcal Electronic energy + Delta-G solvation = -27220.845388 eV Core-core repulsion = 23300.898223 eV Total energy + Delta-G solvation = -3919.947165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.51631 -39.58175 -38.82033 -37.45797 -34.51544 -33.91734 -32.09205 -31.72715 -31.17295 -28.80696 -28.12631 -26.26573 -25.47403 -25.14222 -23.72592 -21.72494 -20.32277 -19.38891 -19.25692 -18.55881 -18.28493 -16.99800 -16.63267 -16.14270 -15.78856 -15.39106 -15.15860 -15.02476 -14.79472 -14.37742 -14.21342 -13.93228 -13.73854 -13.42834 -13.22326 -13.09547 -12.90789 -12.68094 -12.57708 -12.54429 -12.24288 -11.97595 -11.73520 -11.47421 -11.39604 -11.34563 -11.07814 -10.88451 -10.63612 -10.26668 -10.01898 -9.86992 -9.74380 -9.57979 -9.20473 -8.97804 -8.65203 -8.22869 -8.03874 -6.35239 -3.86774 0.06805 1.03472 1.41390 2.27307 2.97439 2.98141 3.02569 3.06456 3.11487 3.68648 3.81395 3.95790 4.06099 4.55133 4.65510 4.74897 4.83620 4.89077 4.98065 5.07767 5.15827 5.31826 5.38758 5.42851 5.51883 5.57103 5.60455 5.64411 5.69501 5.73231 5.76709 5.84094 5.90409 6.03452 6.12770 6.32328 6.46745 7.04876 7.18813 7.31762 7.44757 7.53886 8.03133 8.10226 8.55644 8.91105 9.38140 9.78717 10.77821 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002803 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.926082 B = 9986.421092 C =11479.532061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.141 3.859 3 N -0.479 5.479 4 C 0.030 3.970 5 S 0.189 5.811 6 C -0.299 4.299 7 C 0.597 3.403 8 O -0.533 6.533 9 N -0.708 5.708 10 C 0.132 3.868 11 C 0.062 3.938 12 H 0.090 0.910 13 C -0.186 4.186 14 N -0.512 5.512 15 C 0.015 3.985 16 C 0.041 3.959 17 C 0.452 3.548 18 O -0.558 6.558 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.206 0.794 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.022 0.978 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.252 4.662 12.990 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.002 3.998 3 N -0.193 5.193 4 C -0.265 4.265 5 S 0.444 5.556 6 C -0.424 4.424 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.359 5.359 10 C 0.008 3.992 11 C -0.047 4.047 12 H 0.108 0.892 13 C -0.245 4.245 14 N -0.236 5.236 15 C -0.133 4.133 16 C -0.090 4.090 17 C 0.238 3.762 18 O -0.440 6.440 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.222 0.778 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.040 0.960 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.202 0.798 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.076 5.661 12.449 20.355 hybrid contribution 0.146 -1.913 0.679 2.035 sum -14.930 3.748 13.128 20.231 Atomic orbital electron populations 1.20642 0.86070 1.04447 1.03535 1.20726 0.98718 0.85012 0.95323 1.66146 1.04945 1.31298 1.16896 1.28753 0.95325 1.00950 1.01488 1.84386 1.04553 1.02578 1.64042 1.25527 0.96717 0.99084 1.21026 1.16643 0.86032 0.82509 0.76568 1.90765 1.14310 1.85118 1.51055 1.45748 1.10478 1.05471 1.74240 1.21439 0.95412 0.79863 1.02497 1.22067 0.93536 0.93243 0.95848 0.89236 1.22400 1.02096 0.97123 1.02885 1.61817 1.05740 1.53498 1.02518 1.22624 0.99361 0.98652 0.92650 1.21919 0.91767 0.95058 1.00278 1.19622 0.83240 0.86293 0.87084 1.90534 1.77210 1.28254 1.48020 1.42217 1.16120 1.28909 1.35778 1.19414 0.95225 1.14979 1.13669 0.86265 1.25037 0.95786 0.98188 0.97137 1.69621 1.08495 1.40525 1.33454 0.86684 0.79033 0.83288 0.80438 1.19696 1.20181 1.19496 0.90274 0.90861 0.88195 0.77769 0.75339 0.90972 0.90827 0.91771 0.91673 0.91681 0.91954 0.88496 0.95964 0.89314 0.92999 0.79771 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.70 36.01 0.35 -0.61 16 2 C 0.14 1.75 6.79 -83.89 -0.57 1.18 16 3 N -0.48 -5.72 10.50 -11.53 -0.12 -5.85 16 4 C 0.03 0.28 12.22 51.75 0.63 0.92 16 5 S 0.19 1.95 22.35 -107.50 -2.40 -0.46 16 6 C -0.30 -3.74 6.48 -37.10 -0.24 -3.98 16 7 C 0.60 7.98 7.78 -12.85 -0.10 7.88 16 8 O -0.53 -8.08 14.27 5.20 0.07 -8.01 16 9 N -0.71 -8.49 5.38 -61.62 -0.33 -8.82 16 10 C 0.13 1.41 4.69 -4.04 -0.02 1.39 16 11 C 0.06 0.64 2.50 -67.71 -0.17 0.47 16 12 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 13 C -0.19 -1.63 8.50 37.16 0.32 -1.32 16 14 N -0.51 -7.04 3.93 -236.33 -0.93 -7.96 16 15 C 0.01 0.21 8.45 60.06 0.51 0.72 16 16 C 0.04 0.61 4.89 -4.98 -0.02 0.59 16 17 C 0.45 9.52 7.47 -10.99 -0.08 9.44 16 18 O -0.56 -13.87 13.91 5.55 0.08 -13.79 16 19 N -0.59 -13.34 5.09 -10.96 -0.06 -13.39 16 20 C -0.30 -8.29 10.16 -14.93 -0.15 -8.44 16 21 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.19 13.96 55.50 0.77 -24.41 16 24 Si 0.88 18.77 27.74 -169.99 -4.71 14.05 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.20 6.01 -51.93 -0.31 0.89 16 31 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.41 4.95 7.32 -40.82 -0.30 4.65 16 33 H 0.07 0.83 6.70 -51.93 -0.35 0.48 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 37 H 0.06 0.58 6.75 -51.93 -0.35 0.23 16 38 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 39 H 0.10 1.78 5.83 -51.93 -0.30 1.48 16 40 H 0.02 0.29 6.28 -51.93 -0.33 -0.04 16 41 H 0.09 1.14 8.00 -51.93 -0.42 0.73 16 42 H 0.05 0.69 6.94 -51.93 -0.36 0.33 16 43 H 0.37 7.33 5.76 -40.82 -0.24 7.09 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -33.08 369.76 -7.41 -40.48 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.70 Total: 13.33 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 0.35 Total: 9.25 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.66 Total: -60.43 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.15 Total: -21.80 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.71 Total: 14.05 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.40 Total: -0.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.08 -7.41 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725154968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.081 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds