Wall clock time and date at job start Sat Apr 11 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30938 * 122.90252 * 2 1 4 4 C 1.29430 * 117.35895 * 180.02562 * 3 2 1 5 5 S 1.70954 * 110.39385 * 359.71692 * 4 3 2 6 6 C 1.35658 * 122.89915 * 179.97438 * 2 1 3 7 7 C 1.46684 * 126.13329 * 0.02562 * 6 2 1 8 8 O 1.21688 * 119.99767 * 359.97438 * 7 6 2 9 9 N 1.34778 * 119.99759 * 180.02562 * 7 6 2 10 10 C 1.46503 * 119.99700 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47014 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47502 * 65.00049 * 11 10 9 13 13 C 1.53006 * 109.47127 * 184.99892 * 11 10 9 14 14 N 1.46902 * 109.47094 * 304.99270 * 11 10 9 15 15 C 1.46894 * 111.00496 * 298.95657 * 14 11 10 16 16 C 1.46904 * 111.00057 * 174.99757 * 14 11 10 17 17 C 1.50695 * 109.47170 * 190.00389 * 16 14 11 18 18 O 1.21292 * 120.00023 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00039 * 180.02562 * 17 16 14 20 20 C 1.37098 * 120.00260 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99750 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00127 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99869 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 0.02562 * 22 20 19 25 25 H 1.48509 * 109.46942 * 89.99804 * 24 22 20 26 26 H 1.48494 * 109.47174 * 209.99767 * 24 22 20 27 27 H 1.48497 * 109.46865 * 330.00006 * 24 22 20 28 28 H 1.09007 * 109.47232 * 270.00598 * 1 2 3 29 29 H 1.08998 * 109.46776 * 29.99972 * 1 2 3 30 30 H 1.08992 * 109.47312 * 150.00173 * 1 2 3 31 31 H 1.07995 * 124.80218 * 179.97438 * 4 3 2 32 32 H 0.96997 * 120.00085 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.47549 * 59.99317 * 10 9 7 34 34 H 1.08998 * 109.46987 * 299.99219 * 10 9 7 35 35 H 1.09001 * 109.47002 * 299.99574 * 13 11 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 13 11 10 37 37 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.46934 * 59.99737 * 15 14 11 39 39 H 1.08998 * 109.47599 * 179.97438 * 15 14 11 40 40 H 1.09002 * 109.47223 * 300.00009 * 15 14 11 41 41 H 1.09000 * 109.47030 * 310.00767 * 16 14 11 42 42 H 1.09004 * 109.46807 * 70.00452 * 16 14 11 43 43 H 0.97005 * 120.00256 * 0.02562 * 19 17 16 44 44 H 0.97008 * 120.00158 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9743 -0.0005 5 16 3.9447 -0.6781 0.0068 6 6 2.2439 -1.1390 0.0005 7 6 1.7190 -2.5087 0.0006 8 8 0.5172 -2.6997 0.0007 9 7 2.5678 -3.5556 0.0016 10 6 2.0436 -4.9237 0.0012 11 6 3.2080 -5.9160 0.0019 12 1 3.7657 -5.8213 0.9337 13 6 2.6642 -7.3406 -0.1243 14 7 4.0967 -5.6290 -1.1320 15 6 3.3842 -5.7717 -2.4087 16 6 5.2894 -6.4859 -1.0962 17 6 6.2856 -6.0033 -2.1187 18 8 6.0277 -5.0399 -2.8091 19 7 7.4632 -6.6420 -2.2661 20 6 8.3693 -6.2033 -3.1967 21 1 8.1396 -5.3454 -3.8115 22 6 9.5836 -6.8615 -3.3483 23 7 10.4523 -6.4406 -4.2400 24 14 9.9811 -8.3447 -2.2846 25 1 9.5102 -9.5798 -2.9616 26 1 11.4490 -8.4242 -2.0748 27 1 9.3000 -8.2093 -0.9721 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 4.2057 1.7974 -0.0010 32 1 3.5258 -3.4033 0.0020 33 1 1.4347 -5.0792 -0.8894 34 1 1.4329 -5.0790 0.8905 35 1 2.0048 -7.5536 0.7171 36 1 2.1067 -7.4354 -1.0560 37 1 3.4938 -8.0476 -0.1242 38 1 2.5460 -5.0755 -2.4366 39 1 4.0651 -5.5531 -3.2313 40 1 3.0126 -6.7918 -2.5054 41 1 5.7378 -6.4432 -0.1036 42 1 5.0053 -7.5137 -1.3226 43 1 7.6694 -7.4127 -1.7143 44 1 11.2999 -6.9004 -4.3461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725154968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:49 Heat of formation + Delta-G solvation = -35.434658 kcal Electronic energy + Delta-G solvation = -27222.017611 eV Core-core repulsion = 23300.898223 eV Total energy + Delta-G solvation = -3921.119388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.44511 -40.73498 -40.07150 -38.75330 -36.00700 -35.36535 -33.70759 -32.98112 -32.14976 -29.67767 -29.44410 -27.09900 -26.98712 -25.98754 -25.17923 -22.67124 -21.44624 -21.06943 -20.23707 -20.01609 -19.40978 -18.09916 -17.70779 -17.09921 -17.03399 -16.79053 -16.39538 -16.32470 -15.86927 -15.54981 -15.38481 -14.96060 -14.86921 -14.68561 -14.57680 -14.30410 -14.17378 -13.85869 -13.57042 -13.51717 -13.43784 -13.10673 -12.88607 -12.79414 -12.41203 -12.38562 -12.33809 -12.25016 -11.95782 -11.75605 -11.41880 -11.24150 -10.76937 -10.65299 -10.32196 -10.18701 -10.13048 -9.84268 -9.18130 -8.37712 -5.97714 -0.79307 0.19771 0.57315 1.31993 1.37331 1.37535 1.46311 2.02179 2.02884 2.11967 2.25621 2.63344 3.17706 3.19288 3.29508 3.70750 3.78871 4.00629 4.05806 4.17487 4.20836 4.30746 4.35921 4.46206 4.57020 4.63673 4.66794 4.68974 4.73889 4.76671 4.85880 4.88304 5.03164 5.19853 5.24299 5.33887 5.42348 5.56900 5.91905 6.03117 6.18216 6.37496 6.55562 6.64233 6.93940 7.04876 7.45707 8.03749 8.80005 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002803 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.926082 B = 9986.421092 C =11479.532061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.132 3.868 3 N -0.501 5.501 4 C 0.045 3.955 5 S 0.199 5.801 6 C -0.325 4.325 7 C 0.594 3.406 8 O -0.558 6.558 9 N -0.705 5.705 10 C 0.131 3.869 11 C 0.070 3.930 12 H 0.109 0.891 13 C -0.182 4.182 14 N -0.528 5.528 15 C 0.025 3.975 16 C 0.054 3.946 17 C 0.453 3.547 18 O -0.602 6.602 19 N -0.594 5.594 20 C -0.322 4.322 21 H 0.055 0.945 22 C -0.017 4.017 23 N -0.938 5.938 24 Si 0.963 3.037 25 H -0.260 1.260 26 H -0.279 1.279 27 H -0.228 1.228 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.243 0.757 32 H 0.410 0.590 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.123 0.877 42 H 0.081 0.919 43 H 0.388 0.612 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.657 2.723 16.177 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 N -0.215 5.215 4 C -0.250 4.250 5 S 0.455 5.545 6 C -0.449 4.449 7 C 0.380 3.620 8 O -0.440 6.440 9 N -0.355 5.355 10 C 0.008 3.992 11 C -0.038 4.038 12 H 0.127 0.873 13 C -0.241 4.241 14 N -0.252 5.252 15 C -0.123 4.123 16 C -0.077 4.077 17 C 0.240 3.760 18 O -0.486 6.486 19 N -0.237 5.237 20 C -0.451 4.451 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.579 5.579 24 Si 0.783 3.217 25 H -0.185 1.185 26 H -0.204 1.204 27 H -0.151 1.151 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.259 0.741 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.141 0.859 42 H 0.098 0.902 43 H 0.224 0.776 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.506 3.709 15.662 22.349 hybrid contribution 0.213 -1.135 -0.386 1.217 sum -15.292 2.574 15.276 21.768 Atomic orbital electron populations 1.20611 0.85599 1.04181 1.03958 1.20995 0.99424 0.85307 0.94967 1.66200 1.05894 1.31143 1.18304 1.29429 0.95148 1.01555 0.98836 1.84328 1.03137 1.03150 1.63910 1.25535 0.98009 0.98821 1.22562 1.16808 0.85857 0.83116 0.76243 1.90742 1.15220 1.85588 1.52407 1.45786 1.10276 1.05847 1.73599 1.21547 0.95748 0.79285 1.02662 1.22123 0.92815 0.94078 0.94822 0.87265 1.22370 1.02595 0.95655 1.03461 1.61718 1.06258 1.54125 1.03111 1.22399 0.98224 0.99771 0.91938 1.21851 0.90474 0.96060 0.99333 1.20914 0.83279 0.84886 0.86891 1.90532 1.78054 1.30234 1.49783 1.42047 1.16042 1.29958 1.35604 1.18972 0.97173 1.14076 1.14897 0.92647 1.26090 0.94780 1.02047 0.98617 1.69811 1.09310 1.42848 1.35912 0.85393 0.78809 0.77724 0.79766 1.18482 1.20386 1.15077 0.89469 0.89876 0.89573 0.74091 0.75387 0.92052 0.89404 0.89740 0.92376 0.90999 0.91831 0.92940 0.94064 0.85869 0.90174 0.77616 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.85 9.70 71.24 0.69 -1.16 16 2 C 0.13 3.26 6.79 42.10 0.29 3.55 16 3 N -0.50 -11.51 10.50 -190.40 -2.00 -13.51 16 4 C 0.04 0.78 12.22 130.60 1.60 2.37 16 5 S 0.20 3.94 22.35 -56.49 -1.26 2.68 16 6 C -0.33 -8.08 6.48 23.88 0.15 -7.93 16 7 C 0.59 15.82 7.78 86.45 0.67 16.49 16 8 O -0.56 -17.06 14.27 -4.31 -0.06 -17.12 16 9 N -0.70 -16.26 5.38 -467.08 -2.52 -18.78 16 10 C 0.13 2.55 4.69 86.38 0.40 2.95 16 11 C 0.07 1.19 2.50 44.92 0.11 1.31 16 12 H 0.11 1.52 8.03 -2.39 -0.02 1.50 16 13 C -0.18 -2.43 8.50 71.98 0.61 -1.82 16 14 N -0.53 -13.38 3.93 -901.61 -3.54 -16.92 16 15 C 0.02 0.70 8.45 127.69 1.08 1.78 16 16 C 0.05 1.42 4.89 85.55 0.42 1.84 16 17 C 0.45 18.82 7.47 87.66 0.66 19.47 16 18 O -0.60 -31.05 13.91 -3.07 -0.04 -31.09 16 19 N -0.59 -26.39 5.09 -306.99 -1.56 -27.95 16 20 C -0.32 -18.19 10.16 84.04 0.85 -17.33 16 21 H 0.06 3.76 7.39 -2.91 -0.02 3.74 16 22 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 23 N -0.94 -55.69 13.96 21.66 0.30 -55.39 16 24 Si 0.96 37.49 27.74 68.60 1.90 39.39 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 27 H -0.23 -7.26 6.52 99.48 0.65 -6.62 16 28 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 2.13 6.01 -2.39 -0.01 2.12 16 31 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.41 9.49 7.32 -92.71 -0.68 8.81 16 33 H 0.06 1.34 6.70 -2.39 -0.02 1.33 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.88 6.38 -2.39 -0.02 0.86 16 37 H 0.07 0.90 6.75 -2.39 -0.02 0.89 16 38 H 0.06 1.76 6.44 -2.39 -0.02 1.74 16 39 H 0.05 1.98 5.83 -2.39 -0.01 1.97 16 40 H 0.04 0.99 6.28 -2.39 -0.01 0.98 16 41 H 0.12 2.52 8.00 -2.39 -0.02 2.50 16 42 H 0.08 1.76 6.94 -2.39 -0.02 1.74 16 43 H 0.39 14.14 5.76 -92.70 -0.53 13.61 16 44 H 0.28 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -78.66 369.76 -0.98 -79.64 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.20 Total: 37.97 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 8.00 Total: 21.07 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -9.32 Total: -132.55 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.10 Total: -48.21 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 1.90 Total: 39.39 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.26 Total: 2.68 kcal Total: -78.66 -0.98 -79.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725154968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.208 kcal (2) G-P(sol) polarization free energy of solvation -78.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds