Wall clock time and date at job start Sat Apr 11 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30938 * 122.89987 * 2 1 4 4 C 1.29428 * 117.36210 * 179.97438 * 3 2 1 5 5 S 1.70953 * 110.39098 * 359.72325 * 4 3 2 6 6 C 1.35662 * 122.90481 * 179.97438 * 2 1 3 7 7 C 1.46684 * 126.12949 * 0.02562 * 6 2 1 8 8 O 1.21685 * 120.00363 * 359.97438 * 7 6 2 9 9 N 1.34773 * 119.99666 * 180.02562 * 7 6 2 10 10 C 1.46504 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47513 * 176.23227 * 10 9 7 12 12 H 1.09000 * 109.47306 * 185.67584 * 11 10 9 13 13 C 1.53000 * 109.47154 * 65.67150 * 11 10 9 14 14 N 1.46902 * 109.46844 * 305.67299 * 11 10 9 15 15 C 1.46896 * 111.00000 * 304.09447 * 14 11 10 16 16 C 1.46904 * 111.00071 * 180.14311 * 14 11 10 17 17 C 1.50701 * 109.46978 * 189.99927 * 16 14 11 18 18 O 1.21292 * 120.00060 * 0.02562 * 17 16 14 19 19 N 1.34777 * 119.99466 * 179.97438 * 17 16 14 20 20 C 1.37100 * 119.99464 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00378 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99712 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00161 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99988 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47405 * 89.99995 * 24 22 20 26 26 H 1.48504 * 109.47149 * 209.99704 * 24 22 20 27 27 H 1.48496 * 109.47229 * 329.99687 * 24 22 20 28 28 H 1.08997 * 109.47184 * 269.99651 * 1 2 3 29 29 H 1.09000 * 109.47474 * 30.00499 * 1 2 3 30 30 H 1.09005 * 109.46784 * 150.00322 * 1 2 3 31 31 H 1.08003 * 124.80869 * 179.97438 * 4 3 2 32 32 H 0.96997 * 120.00541 * 359.97438 * 9 7 6 33 33 H 1.08997 * 109.46643 * 296.23321 * 10 9 7 34 34 H 1.08998 * 109.47064 * 56.22446 * 10 9 7 35 35 H 1.08998 * 109.47127 * 299.99910 * 13 11 10 36 36 H 1.08997 * 109.47160 * 60.00498 * 13 11 10 37 37 H 1.09002 * 109.47062 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.47356 * 66.54178 * 15 14 11 39 39 H 1.09002 * 109.47198 * 186.54202 * 15 14 11 40 40 H 1.08997 * 109.47191 * 306.54187 * 15 14 11 41 41 H 1.08996 * 109.46729 * 309.99958 * 16 14 11 42 42 H 1.08998 * 109.47271 * 69.99571 * 16 14 11 43 43 H 0.96993 * 120.00443 * 359.97438 * 19 17 16 44 44 H 0.96994 * 120.00018 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5065 0.9745 0.0005 5 16 3.9447 -0.6779 0.0088 6 6 2.2440 -1.1390 0.0005 7 6 1.7191 -2.5087 0.0006 8 8 0.5174 -2.6999 0.0007 9 7 2.5680 -3.5555 0.0016 10 6 2.0439 -4.9236 0.0012 11 6 3.2056 -5.9149 -0.0922 12 1 2.8127 -6.9265 -0.1941 13 6 4.0570 -5.8236 1.1757 14 7 4.0329 -5.5908 -1.2620 15 6 3.2257 -5.5733 -2.4892 16 6 5.1589 -6.5261 -1.3859 17 6 6.1152 -6.0244 -2.4371 18 8 5.8820 -4.9894 -3.0248 19 7 7.2302 -6.7255 -2.7233 20 6 8.1005 -6.2689 -3.6792 21 1 7.8924 -5.3477 -4.2031 22 6 9.2497 -6.9919 -3.9746 23 7 10.0836 -6.5546 -4.8912 24 14 9.6092 -8.5856 -3.0689 25 1 9.0033 -9.7224 -3.8077 26 1 11.0783 -8.7820 -2.9767 27 1 9.0319 -8.5194 -1.7023 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 4.2057 1.7976 0.0002 32 1 3.5259 -3.4033 0.0020 33 1 1.4887 -5.1002 0.9224 34 1 1.3814 -5.0586 -0.8538 35 1 4.4499 -4.8120 1.2775 36 1 3.4432 -6.0641 2.0437 37 1 4.8849 -6.5295 1.1090 38 1 2.5163 -4.7468 -2.4458 39 1 3.8792 -5.4462 -3.3523 40 1 2.6824 -6.5139 -2.5802 41 1 5.6765 -6.6002 -0.4295 42 1 4.7851 -7.5086 -1.6739 43 1 7.4173 -7.5526 -2.2525 44 1 10.8856 -7.0595 -5.0977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725154969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:54 Heat of formation + Delta-G solvation = -7.137679 kcal Electronic energy + Delta-G solvation = -27333.750641 eV Core-core repulsion = 23413.858303 eV Total energy + Delta-G solvation = -3919.892339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.53382 -39.57535 -38.78164 -37.37074 -34.51832 -33.87146 -32.09993 -31.71815 -31.28853 -29.12081 -28.24180 -26.14708 -25.17571 -24.96066 -23.64703 -22.00282 -20.12365 -19.55918 -19.35911 -18.60968 -18.27706 -17.04223 -16.59243 -16.09238 -15.76174 -15.41633 -15.10718 -14.94209 -14.71488 -14.41575 -14.09910 -13.97298 -13.75053 -13.73692 -13.27388 -13.13366 -12.69533 -12.67632 -12.55083 -12.49800 -12.26732 -11.90828 -11.75351 -11.48774 -11.46329 -11.38112 -11.06208 -10.74572 -10.63292 -10.27425 -10.01662 -9.87932 -9.75078 -9.57659 -9.20894 -8.98268 -8.63274 -8.22632 -8.07869 -6.34965 -3.86482 0.06125 1.02517 1.40409 2.26777 2.97495 2.98320 3.02848 3.06588 3.11675 3.68826 3.79201 3.95173 4.06317 4.53367 4.65947 4.73881 4.83171 4.84718 4.96251 5.10138 5.17026 5.33375 5.44811 5.51516 5.53528 5.55287 5.59895 5.64821 5.69158 5.74837 5.79017 5.85630 5.89796 6.08231 6.11588 6.30990 6.43488 7.05342 7.18831 7.30906 7.43973 7.54242 8.02568 8.10455 8.56000 8.91347 9.38436 9.78991 10.78125 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015417 B = 0.002741 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.686969 B =10210.980843 C =11299.941591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.141 3.859 3 N -0.478 5.478 4 C 0.030 3.970 5 S 0.187 5.813 6 C -0.299 4.299 7 C 0.597 3.403 8 O -0.533 6.533 9 N -0.706 5.706 10 C 0.131 3.869 11 C 0.063 3.937 12 H 0.058 0.942 13 C -0.150 4.150 14 N -0.514 5.514 15 C 0.020 3.980 16 C 0.038 3.962 17 C 0.452 3.548 18 O -0.558 6.558 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.206 0.794 32 H 0.410 0.590 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.016 0.984 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 5.200 14.634 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.002 3.998 3 N -0.193 5.193 4 C -0.265 4.265 5 S 0.442 5.558 6 C -0.423 4.423 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.358 5.358 10 C 0.007 3.993 11 C -0.046 4.046 12 H 0.076 0.924 13 C -0.208 4.208 14 N -0.239 5.239 15 C -0.127 4.127 16 C -0.094 4.094 17 C 0.238 3.762 18 O -0.440 6.440 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.222 0.778 32 H 0.247 0.753 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.035 0.965 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.202 0.798 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.893 6.211 14.180 20.800 hybrid contribution 0.035 -1.964 0.432 2.012 sum -13.858 4.246 14.612 20.581 Atomic orbital electron populations 1.20643 0.86061 1.04464 1.03534 1.20728 0.98721 0.85006 0.95299 1.66142 1.04941 1.31295 1.16874 1.28750 0.95324 1.00901 1.01487 1.84354 1.04647 1.02661 1.64114 1.25522 0.96668 0.99092 1.21011 1.16640 0.86037 0.82509 0.76577 1.90766 1.14313 1.85103 1.51033 1.45759 1.10435 1.05405 1.74219 1.21431 0.95364 0.80156 1.02396 1.21997 0.93346 0.97082 0.92203 0.92438 1.21942 1.00039 1.03068 0.95730 1.61626 1.09117 1.50288 1.02892 1.22562 0.97638 0.98983 0.93558 1.21991 0.93132 0.93951 1.00288 1.19615 0.83401 0.86589 0.86599 1.90540 1.75219 1.24416 1.53814 1.42217 1.21097 1.22882 1.36852 1.19413 1.00266 1.09791 1.13808 0.86269 1.25039 0.95956 0.98266 0.96891 1.69617 1.12340 1.39090 1.31056 0.86684 0.78989 0.83942 0.79824 1.19696 1.20181 1.19500 0.90271 0.90852 0.88187 0.77766 0.75348 0.90833 0.90855 0.91746 0.91909 0.91722 0.91809 0.88620 0.96503 0.88820 0.93280 0.79774 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.70 36.01 0.35 -0.61 16 2 C 0.14 1.75 6.79 -83.89 -0.57 1.18 16 3 N -0.48 -5.69 10.50 -11.53 -0.12 -5.81 16 4 C 0.03 0.29 12.22 51.75 0.63 0.92 16 5 S 0.19 1.90 22.35 -107.50 -2.40 -0.50 16 6 C -0.30 -3.70 6.48 -37.09 -0.24 -3.94 16 7 C 0.60 7.91 7.78 -12.85 -0.10 7.81 16 8 O -0.53 -8.04 14.27 5.20 0.07 -7.96 16 9 N -0.71 -8.37 5.10 -61.62 -0.31 -8.68 16 10 C 0.13 1.39 4.60 -4.04 -0.02 1.37 16 11 C 0.06 0.65 2.32 -67.71 -0.16 0.50 16 12 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 13 C -0.15 -1.36 8.87 37.16 0.33 -1.04 16 14 N -0.51 -7.18 3.83 -236.33 -0.91 -8.09 16 15 C 0.02 0.30 8.57 60.06 0.51 0.81 16 16 C 0.04 0.57 5.27 -4.97 -0.03 0.54 16 17 C 0.45 9.59 7.41 -10.98 -0.08 9.51 16 18 O -0.56 -13.94 13.98 5.55 0.08 -13.86 16 19 N -0.59 -13.40 5.09 -10.96 -0.06 -13.46 16 20 C -0.30 -8.31 10.16 -14.93 -0.15 -8.46 16 21 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.23 13.96 55.50 0.77 -24.45 16 24 Si 0.88 18.81 27.74 -169.99 -4.71 14.10 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.20 6.52 56.52 0.37 -4.84 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.20 6.01 -51.93 -0.31 0.89 16 31 H 0.21 1.16 8.06 -52.48 -0.42 0.73 16 32 H 0.41 4.90 6.47 -40.82 -0.26 4.63 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.84 6.83 -51.93 -0.35 0.49 16 35 H 0.06 0.62 7.15 -51.93 -0.37 0.25 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.58 6.20 -51.93 -0.32 0.26 16 38 H 0.06 0.92 6.74 -51.93 -0.35 0.57 16 39 H 0.10 1.77 5.79 -51.93 -0.30 1.47 16 40 H 0.02 0.22 8.12 -51.93 -0.42 -0.20 16 41 H 0.09 1.23 5.83 -51.93 -0.30 0.92 16 42 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 43 H 0.37 7.36 5.76 -40.82 -0.24 7.13 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -33.16 370.68 -7.37 -40.52 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.75 Total: 13.00 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 0.38 Total: 9.61 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.62 Total: -60.49 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.15 Total: -21.82 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.10 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.40 Total: -0.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.16 -7.37 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725154969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.386 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds