Wall clock time and date at job start Sat Apr 11 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30938 * 122.89987 * 2 1 4 4 C 1.29428 * 117.36210 * 179.97438 * 3 2 1 5 5 S 1.70953 * 110.39098 * 359.72325 * 4 3 2 6 6 C 1.35662 * 122.90481 * 179.97438 * 2 1 3 7 7 C 1.46684 * 126.12949 * 0.02562 * 6 2 1 8 8 O 1.21685 * 120.00363 * 359.97438 * 7 6 2 9 9 N 1.34773 * 119.99666 * 180.02562 * 7 6 2 10 10 C 1.46504 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47513 * 176.23227 * 10 9 7 12 12 H 1.09000 * 109.47306 * 185.67584 * 11 10 9 13 13 C 1.53000 * 109.47154 * 65.67150 * 11 10 9 14 14 N 1.46902 * 109.46844 * 305.67299 * 11 10 9 15 15 C 1.46896 * 111.00000 * 304.09447 * 14 11 10 16 16 C 1.46904 * 111.00071 * 180.14311 * 14 11 10 17 17 C 1.50701 * 109.46978 * 189.99927 * 16 14 11 18 18 O 1.21292 * 120.00060 * 0.02562 * 17 16 14 19 19 N 1.34777 * 119.99466 * 179.97438 * 17 16 14 20 20 C 1.37100 * 119.99464 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00378 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99712 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00161 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99988 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47405 * 89.99995 * 24 22 20 26 26 H 1.48504 * 109.47149 * 209.99704 * 24 22 20 27 27 H 1.48496 * 109.47229 * 329.99687 * 24 22 20 28 28 H 1.08997 * 109.47184 * 269.99651 * 1 2 3 29 29 H 1.09000 * 109.47474 * 30.00499 * 1 2 3 30 30 H 1.09005 * 109.46784 * 150.00322 * 1 2 3 31 31 H 1.08003 * 124.80869 * 179.97438 * 4 3 2 32 32 H 0.96997 * 120.00541 * 359.97438 * 9 7 6 33 33 H 1.08997 * 109.46643 * 296.23321 * 10 9 7 34 34 H 1.08998 * 109.47064 * 56.22446 * 10 9 7 35 35 H 1.08998 * 109.47127 * 299.99910 * 13 11 10 36 36 H 1.08997 * 109.47160 * 60.00498 * 13 11 10 37 37 H 1.09002 * 109.47062 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.47356 * 66.54178 * 15 14 11 39 39 H 1.09002 * 109.47198 * 186.54202 * 15 14 11 40 40 H 1.08997 * 109.47191 * 306.54187 * 15 14 11 41 41 H 1.08996 * 109.46729 * 309.99958 * 16 14 11 42 42 H 1.08998 * 109.47271 * 69.99571 * 16 14 11 43 43 H 0.96993 * 120.00443 * 359.97438 * 19 17 16 44 44 H 0.96994 * 120.00018 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5065 0.9745 0.0005 5 16 3.9447 -0.6779 0.0088 6 6 2.2440 -1.1390 0.0005 7 6 1.7191 -2.5087 0.0006 8 8 0.5174 -2.6999 0.0007 9 7 2.5680 -3.5555 0.0016 10 6 2.0439 -4.9236 0.0012 11 6 3.2056 -5.9149 -0.0922 12 1 2.8127 -6.9265 -0.1941 13 6 4.0570 -5.8236 1.1757 14 7 4.0329 -5.5908 -1.2620 15 6 3.2257 -5.5733 -2.4892 16 6 5.1589 -6.5261 -1.3859 17 6 6.1152 -6.0244 -2.4371 18 8 5.8820 -4.9894 -3.0248 19 7 7.2302 -6.7255 -2.7233 20 6 8.1005 -6.2689 -3.6792 21 1 7.8924 -5.3477 -4.2031 22 6 9.2497 -6.9919 -3.9746 23 7 10.0836 -6.5546 -4.8912 24 14 9.6092 -8.5856 -3.0689 25 1 9.0033 -9.7224 -3.8077 26 1 11.0783 -8.7820 -2.9767 27 1 9.0319 -8.5194 -1.7023 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 4.2057 1.7976 0.0002 32 1 3.5259 -3.4033 0.0020 33 1 1.4887 -5.1002 0.9224 34 1 1.3814 -5.0586 -0.8538 35 1 4.4499 -4.8120 1.2775 36 1 3.4432 -6.0641 2.0437 37 1 4.8849 -6.5295 1.1090 38 1 2.5163 -4.7468 -2.4458 39 1 3.8792 -5.4462 -3.3523 40 1 2.6824 -6.5139 -2.5802 41 1 5.6765 -6.6002 -0.4295 42 1 4.7851 -7.5086 -1.6739 43 1 7.4173 -7.5526 -2.2525 44 1 10.8856 -7.0595 -5.0977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725154969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:53 Heat of formation + Delta-G solvation = -33.918603 kcal Electronic energy + Delta-G solvation = -27334.911949 eV Core-core repulsion = 23413.858303 eV Total energy + Delta-G solvation = -3921.053647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45792 -40.71560 -40.08535 -38.63623 -36.03257 -35.32403 -33.71132 -32.98649 -32.22114 -30.16218 -29.37200 -27.31061 -26.33848 -25.97948 -25.03298 -22.95849 -21.35643 -20.94816 -20.46455 -20.08458 -19.43037 -18.11295 -17.67853 -17.21944 -16.91255 -16.78951 -16.49475 -16.03657 -15.76845 -15.62030 -15.25030 -15.16113 -14.94265 -14.71289 -14.58113 -14.37996 -14.25110 -13.85805 -13.52504 -13.45586 -13.37540 -13.16659 -12.97667 -12.74029 -12.41422 -12.34559 -12.32052 -12.27104 -11.96087 -11.67672 -11.42703 -11.24355 -10.77330 -10.65331 -10.31867 -10.18962 -10.12274 -9.84127 -9.23311 -8.38047 -5.98107 -0.79393 0.19459 0.56938 1.31724 1.37303 1.37407 1.46057 2.01647 2.02959 2.12863 2.25323 2.61314 3.17572 3.18736 3.26670 3.67445 3.80662 3.99168 4.04042 4.11959 4.17420 4.33464 4.40154 4.44095 4.56404 4.61392 4.68625 4.69496 4.74268 4.79191 4.85624 4.94764 5.02609 5.17660 5.23740 5.37101 5.40765 5.56516 5.90950 6.02569 6.17559 6.37257 6.55464 6.63782 6.93317 7.05119 7.45073 8.02896 8.79668 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015417 B = 0.002741 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.686969 B =10210.980843 C =11299.941591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.132 3.868 3 N -0.501 5.501 4 C 0.045 3.955 5 S 0.198 5.802 6 C -0.325 4.325 7 C 0.594 3.406 8 O -0.558 6.558 9 N -0.702 5.702 10 C 0.129 3.871 11 C 0.069 3.931 12 H 0.081 0.919 13 C -0.149 4.149 14 N -0.530 5.530 15 C 0.030 3.970 16 C 0.050 3.950 17 C 0.453 3.547 18 O -0.602 6.602 19 N -0.594 5.594 20 C -0.322 4.322 21 H 0.055 0.945 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.963 3.037 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.228 1.228 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.243 0.757 32 H 0.409 0.591 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.038 0.962 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.388 0.612 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.443 3.100 17.698 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 N -0.215 5.215 4 C -0.250 4.250 5 S 0.453 5.547 6 C -0.449 4.449 7 C 0.380 3.620 8 O -0.440 6.440 9 N -0.353 5.353 10 C 0.006 3.994 11 C -0.039 4.039 12 H 0.099 0.901 13 C -0.207 4.207 14 N -0.256 5.256 15 C -0.118 4.118 16 C -0.080 4.080 17 C 0.241 3.759 18 O -0.486 6.486 19 N -0.236 5.236 20 C -0.451 4.451 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.578 5.578 24 Si 0.783 3.217 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.151 1.151 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.259 0.741 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.144 0.856 42 H 0.096 0.904 43 H 0.224 0.776 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.251 4.098 17.272 22.765 hybrid contribution 0.092 -1.131 -0.577 1.273 sum -14.160 2.967 16.695 22.091 Atomic orbital electron populations 1.20610 0.85610 1.04174 1.03956 1.20993 0.99419 0.85312 0.94979 1.66195 1.05898 1.31144 1.18288 1.29428 0.95146 1.01528 0.98849 1.84295 1.03210 1.03199 1.63954 1.25535 0.97975 0.98842 1.22523 1.16798 0.85856 0.83106 0.76258 1.90743 1.15229 1.85571 1.52410 1.45784 1.10218 1.05751 1.73548 1.21543 0.95554 0.79574 1.02758 1.22075 0.92860 0.97904 0.91045 0.90143 1.21965 1.00344 1.02781 0.95575 1.61543 1.09572 1.50883 1.03567 1.22343 0.96793 1.00040 0.92656 1.21917 0.92229 0.94781 0.99118 1.20888 0.83179 0.85420 0.86454 1.90535 1.76075 1.26533 1.55430 1.42045 1.21092 1.23934 1.36567 1.18969 1.02228 1.08484 1.15453 0.92645 1.26093 0.94883 1.02922 0.97628 1.69807 1.13223 1.41503 1.33316 0.85393 0.78757 0.77387 0.80159 1.18492 1.20341 1.15080 0.89461 0.89898 0.89578 0.74082 0.75411 0.89250 0.91869 0.92680 0.89725 0.91008 0.92008 0.92886 0.94388 0.85618 0.90397 0.77622 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.85 9.70 71.24 0.69 -1.16 16 2 C 0.13 3.26 6.79 42.10 0.29 3.54 16 3 N -0.50 -11.48 10.50 -190.40 -2.00 -13.48 16 4 C 0.04 0.78 12.22 130.60 1.60 2.37 16 5 S 0.20 3.89 22.35 -56.49 -1.26 2.62 16 6 C -0.32 -8.04 6.48 23.88 0.15 -7.89 16 7 C 0.59 15.73 7.78 86.45 0.67 16.40 16 8 O -0.56 -16.99 14.27 -4.30 -0.06 -17.05 16 9 N -0.70 -16.05 5.10 -467.09 -2.38 -18.43 16 10 C 0.13 2.50 4.60 86.38 0.40 2.90 16 11 C 0.07 1.20 2.32 44.91 0.10 1.31 16 12 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 13 C -0.15 -2.11 8.87 71.98 0.64 -1.47 16 14 N -0.53 -13.68 3.83 -901.62 -3.45 -17.13 16 15 C 0.03 0.86 8.57 127.69 1.09 1.95 16 16 C 0.05 1.36 5.27 85.56 0.45 1.81 16 17 C 0.45 18.99 7.41 87.66 0.65 19.64 16 18 O -0.60 -31.21 13.98 -3.07 -0.04 -31.25 16 19 N -0.59 -26.54 5.09 -306.98 -1.56 -28.10 16 20 C -0.32 -18.25 10.16 84.04 0.85 -17.40 16 21 H 0.06 3.77 7.39 -2.91 -0.02 3.75 16 22 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 23 N -0.94 -55.74 13.96 21.66 0.30 -55.44 16 24 Si 0.96 37.58 27.74 68.60 1.90 39.48 16 25 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 26 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.23 -7.29 6.52 99.48 0.65 -6.64 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 2.14 6.01 -2.38 -0.01 2.12 16 31 H 0.24 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.41 9.45 6.47 -92.71 -0.60 8.85 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.37 6.83 -2.39 -0.02 1.35 16 35 H 0.05 0.90 7.15 -2.39 -0.02 0.88 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.93 6.20 -2.39 -0.01 0.92 16 38 H 0.06 1.78 6.74 -2.39 -0.02 1.76 16 39 H 0.05 2.00 5.79 -2.39 -0.01 1.99 16 40 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 41 H 0.13 2.68 5.83 -2.39 -0.01 2.67 16 42 H 0.08 1.74 8.12 -2.39 -0.02 1.73 16 43 H 0.39 14.24 5.76 -92.71 -0.53 13.71 16 44 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -78.72 370.68 -0.64 -79.36 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.13 Total: 37.86 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 8.05 Total: 21.55 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -9.10 Total: -132.58 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.10 Total: -48.30 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 1.90 Total: 39.48 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.26 Total: 2.62 kcal Total: -78.72 -0.64 -79.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725154969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.440 kcal (2) G-P(sol) polarization free energy of solvation -78.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds