Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29517 * 121.52801 * 2 1 4 4 S 1.69483 * 107.84506 * 180.02562 * 3 2 1 5 5 C 1.72018 * 96.02408 * 0.02562 * 4 3 2 6 6 C 1.37890 * 105.36894 * 359.97438 * 5 4 3 7 7 C 1.47338 * 123.09037 * 179.97438 * 6 5 4 8 8 O 1.21612 * 120.00626 * 138.03373 * 7 6 5 9 9 N 1.34777 * 119.99788 * 318.03073 * 7 6 5 10 10 C 1.46499 * 119.99852 * 4.34836 * 9 7 6 11 11 C 1.46495 * 120.00025 * 184.35185 * 9 7 6 12 12 C 1.53003 * 109.47267 * 84.52754 * 11 9 7 13 13 H 1.09000 * 109.46783 * 296.01285 * 12 11 9 14 14 C 1.53001 * 109.47055 * 176.01834 * 12 11 9 15 15 N 1.46895 * 109.47515 * 56.01628 * 12 11 9 16 16 C 1.46893 * 111.00117 * 205.91963 * 15 12 11 17 17 C 1.50706 * 109.47404 * 179.97438 * 16 15 12 18 18 O 1.21293 * 119.99436 * 359.97438 * 17 16 15 19 19 N 1.34767 * 120.00254 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00075 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99936 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99931 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99965 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99829 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47032 * 90.00188 * 24 22 20 26 26 H 1.48500 * 109.46891 * 209.99849 * 24 22 20 27 27 H 1.48495 * 109.47080 * 330.00406 * 24 22 20 28 28 H 1.08998 * 109.46827 * 269.97323 * 1 2 3 29 29 H 1.08996 * 109.47322 * 29.97552 * 1 2 3 30 30 H 1.09000 * 109.47215 * 149.97576 * 1 2 3 31 31 H 1.08002 * 127.31426 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47430 * 87.35324 * 10 9 7 33 33 H 1.09001 * 109.47058 * 207.35686 * 10 9 7 34 34 H 1.08999 * 109.47357 * 327.35345 * 10 9 7 35 35 H 1.09005 * 109.46935 * 204.52552 * 11 9 7 36 36 H 1.08995 * 109.47138 * 324.52491 * 11 9 7 37 37 H 1.09000 * 109.47410 * 179.97438 * 14 12 11 38 38 H 1.09005 * 109.46738 * 299.99862 * 14 12 11 39 39 H 1.09003 * 109.47497 * 59.99189 * 14 12 11 40 40 H 1.00900 * 110.99641 * 329.87096 * 15 12 11 41 41 H 1.09000 * 109.47375 * 300.00103 * 16 15 12 42 42 H 1.09006 * 109.47157 * 59.99856 * 16 15 12 43 43 H 0.97008 * 119.99869 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1842 1.1040 0.0000 4 16 3.8310 0.7031 -0.0007 5 6 3.6017 -1.0018 -0.0018 6 6 2.2353 -1.1868 -0.0010 7 6 1.6038 -2.5179 -0.0020 8 8 0.6362 -2.7326 0.7027 9 7 2.0984 -3.4978 -0.7841 10 6 3.3196 -3.2692 -1.5605 11 6 1.4149 -4.7914 -0.8579 12 6 0.2927 -4.7169 -1.8953 13 1 -0.4565 -3.9956 -1.5688 14 6 -0.3565 -6.0943 -2.0442 15 7 0.8480 -4.2949 -3.1881 16 6 -0.1740 -3.6318 -4.0088 17 6 0.4315 -3.2135 -5.3240 18 8 1.5996 -3.4446 -5.5546 19 7 -0.3250 -2.5827 -6.2438 20 6 0.2260 -2.2017 -7.4400 21 1 1.2661 -2.4075 -7.6453 22 6 -0.5539 -1.5508 -8.3882 23 7 -1.8194 -1.3000 -8.1381 24 14 0.1970 -1.0311 -10.0177 25 1 0.0423 -2.1282 -11.0064 26 1 -0.4944 0.1852 -10.5157 27 1 1.6399 -0.7370 -9.8264 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.3658 -1.7651 -0.0029 32 1 4.1892 -3.5112 -0.9495 33 1 3.3105 -3.9032 -2.4470 34 1 3.3676 -2.2230 -1.8625 35 1 2.1279 -5.5630 -1.1488 36 1 0.9929 -5.0355 0.1169 37 1 -1.1563 -6.0412 -2.7829 38 1 0.3928 -6.8156 -2.3706 39 1 -0.7685 -6.4075 -1.0849 40 1 1.6513 -3.6981 -3.0590 41 1 -0.9978 -4.3220 -4.1909 42 1 -0.5464 -2.7518 -3.4844 43 1 -1.2594 -2.3982 -6.0595 44 1 -2.3637 -0.8453 -8.7998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725485748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = -19.581768 kcal Electronic energy + Delta-G solvation = -27836.678477 eV Core-core repulsion = 23916.246522 eV Total energy + Delta-G solvation = -3920.431955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83475 -38.82396 -38.19194 -36.85578 -35.03623 -33.90601 -32.14971 -31.28220 -30.81715 -29.83231 -27.56161 -26.85592 -26.17698 -24.24669 -23.70987 -21.50889 -20.35669 -19.44395 -19.27096 -18.11777 -17.90999 -17.10272 -16.52182 -16.18463 -15.71845 -15.42874 -15.24722 -14.81240 -14.50753 -14.45013 -14.06848 -13.82576 -13.63503 -13.36424 -13.03242 -12.84773 -12.74726 -12.58072 -12.44706 -12.38568 -11.97214 -11.86760 -11.69969 -11.65084 -11.62242 -11.40350 -11.10329 -11.01695 -10.87238 -10.40693 -10.22995 -10.14985 -9.90597 -9.52049 -9.01700 -8.86383 -8.45941 -8.09092 -7.97090 -6.42572 -3.83551 0.18591 1.08235 1.45561 1.68378 2.54554 2.89429 3.16923 3.25672 3.31098 3.89366 4.07602 4.15720 4.26091 4.36283 4.66595 4.81606 4.90052 5.00480 5.04843 5.11067 5.16093 5.22296 5.24558 5.33487 5.40967 5.46240 5.52794 5.57336 5.63722 5.77727 5.83950 5.93547 5.99452 6.03461 6.14419 6.25117 6.34646 6.40421 7.01542 7.22733 7.53976 7.65689 7.85154 8.05002 8.59858 9.16503 9.53166 10.04156 10.75112 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.003355 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.985292 B = 8343.822154 C = 9896.350895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.163 3.837 3 N -0.465 5.465 4 S 0.290 5.710 5 C -0.177 4.177 6 C -0.207 4.207 7 C 0.586 3.414 8 O -0.525 6.525 9 N -0.608 5.608 10 C 0.061 3.939 11 C 0.116 3.884 12 C 0.064 3.936 13 H 0.048 0.952 14 C -0.136 4.136 15 N -0.664 5.664 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.586 6.586 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.194 0.806 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.346 0.654 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 -2.063 18.823 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.015 4.015 3 N -0.285 5.285 4 S 0.445 5.555 5 C -0.326 4.326 6 C -0.229 4.229 7 C 0.372 3.628 8 O -0.401 6.401 9 N -0.341 5.341 10 C -0.082 4.082 11 C -0.007 4.007 12 C -0.047 4.047 13 H 0.066 0.934 14 C -0.195 4.195 15 N -0.300 5.300 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.470 6.470 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.211 0.789 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.169 0.831 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.762 -0.751 18.620 20.592 hybrid contribution -1.051 -0.421 -0.451 1.219 sum 7.711 -1.171 18.169 19.772 Atomic orbital electron populations 1.20631 0.85568 1.04154 1.04223 1.21366 0.99398 0.86685 0.94045 1.76468 1.00300 1.26001 1.25774 1.84092 1.10720 0.95511 1.65134 1.27574 0.99220 1.04724 1.01059 1.20340 0.92530 0.95925 1.14094 1.17419 0.82994 0.82848 0.79567 1.90801 1.26785 1.81724 1.40819 1.47759 1.27340 1.13875 1.45149 1.22270 0.85632 1.03790 0.96536 1.21806 0.95152 0.83621 1.00100 1.21956 0.95804 0.97938 0.89038 0.93376 1.21724 1.00856 0.95727 1.01179 1.60316 1.08822 1.46951 1.13890 1.21716 0.95204 0.97312 0.93998 1.19795 0.87605 0.83953 0.86004 1.90497 1.16958 1.59668 1.79899 1.41865 1.12409 1.50832 1.14767 1.19693 0.97517 1.34251 0.91492 0.87939 1.25264 0.95364 0.97298 0.99950 1.69614 1.06152 1.42079 1.36348 0.85864 0.79094 0.78018 0.81349 1.20364 1.20922 1.19439 0.89186 0.90010 0.89807 0.78916 0.92085 0.88827 0.90501 0.89075 0.89147 0.92199 0.91786 0.92622 0.83149 0.89567 0.94219 0.77465 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.41 36.00 0.34 -0.65 16 2 C 0.16 2.07 6.74 -83.20 -0.56 1.51 16 3 N -0.46 -6.00 11.97 32.50 0.39 -5.61 16 4 S 0.29 2.78 23.69 -107.50 -2.55 0.23 16 5 C -0.18 -1.57 8.94 30.61 0.27 -1.29 16 6 C -0.21 -2.42 5.06 -105.95 -0.54 -2.96 16 7 C 0.59 7.40 6.78 -12.56 -0.09 7.32 16 8 O -0.52 -7.84 15.29 5.27 0.08 -7.76 16 9 N -0.61 -6.64 2.50 -182.89 -0.46 -7.10 16 10 C 0.06 0.55 7.88 59.85 0.47 1.03 16 11 C 0.12 1.22 5.06 -4.04 -0.02 1.20 16 12 C 0.06 0.81 2.90 -67.71 -0.20 0.61 16 13 H 0.05 0.68 7.78 -51.93 -0.40 0.27 16 14 C -0.14 -1.52 9.43 37.16 0.35 -1.17 16 15 N -0.66 -10.55 5.94 -107.99 -0.64 -11.19 16 16 C 0.05 0.91 5.96 -4.98 -0.03 0.88 16 17 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 18 O -0.59 -15.57 15.78 5.55 0.09 -15.48 16 19 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 24 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.04 6.94 -51.93 -0.36 0.68 16 31 H 0.19 1.09 6.43 -52.49 -0.34 0.75 16 32 H 0.06 0.37 7.32 -51.93 -0.38 -0.01 16 33 H 0.09 0.97 6.67 -51.93 -0.35 0.62 16 34 H 0.08 0.74 5.85 -51.93 -0.30 0.44 16 35 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 36 H 0.09 0.94 7.53 -51.93 -0.39 0.55 16 37 H 0.06 0.72 7.51 -51.93 -0.39 0.33 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.35 5.57 4.63 -39.29 -0.18 5.39 16 41 H 0.09 1.46 7.50 -51.93 -0.39 1.07 16 42 H 0.04 0.68 8.05 -51.93 -0.42 0.27 16 43 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -33.31 375.74 -7.95 -41.26 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.84 Total: 13.38 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -0.32 Total: 8.81 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.04 Total: -62.09 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.55 Total: 0.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.31 -7.95 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725485748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.678 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds