Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29517 * 121.52801 * 2 1 4 4 S 1.69483 * 107.84506 * 180.02562 * 3 2 1 5 5 C 1.72018 * 96.02408 * 0.02562 * 4 3 2 6 6 C 1.37890 * 105.36894 * 359.97438 * 5 4 3 7 7 C 1.47338 * 123.09037 * 179.97438 * 6 5 4 8 8 O 1.21612 * 120.00626 * 138.03373 * 7 6 5 9 9 N 1.34777 * 119.99788 * 318.03073 * 7 6 5 10 10 C 1.46499 * 119.99852 * 4.34836 * 9 7 6 11 11 C 1.46495 * 120.00025 * 184.35185 * 9 7 6 12 12 C 1.53003 * 109.47267 * 84.52754 * 11 9 7 13 13 H 1.09000 * 109.46783 * 296.01285 * 12 11 9 14 14 C 1.53001 * 109.47055 * 176.01834 * 12 11 9 15 15 N 1.46895 * 109.47515 * 56.01628 * 12 11 9 16 16 C 1.46893 * 111.00117 * 205.91963 * 15 12 11 17 17 C 1.50706 * 109.47404 * 179.97438 * 16 15 12 18 18 O 1.21293 * 119.99436 * 359.97438 * 17 16 15 19 19 N 1.34767 * 120.00254 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00075 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99936 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99931 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99965 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99829 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47032 * 90.00188 * 24 22 20 26 26 H 1.48500 * 109.46891 * 209.99849 * 24 22 20 27 27 H 1.48495 * 109.47080 * 330.00406 * 24 22 20 28 28 H 1.08998 * 109.46827 * 269.97323 * 1 2 3 29 29 H 1.08996 * 109.47322 * 29.97552 * 1 2 3 30 30 H 1.09000 * 109.47215 * 149.97576 * 1 2 3 31 31 H 1.08002 * 127.31426 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47430 * 87.35324 * 10 9 7 33 33 H 1.09001 * 109.47058 * 207.35686 * 10 9 7 34 34 H 1.08999 * 109.47357 * 327.35345 * 10 9 7 35 35 H 1.09005 * 109.46935 * 204.52552 * 11 9 7 36 36 H 1.08995 * 109.47138 * 324.52491 * 11 9 7 37 37 H 1.09000 * 109.47410 * 179.97438 * 14 12 11 38 38 H 1.09005 * 109.46738 * 299.99862 * 14 12 11 39 39 H 1.09003 * 109.47497 * 59.99189 * 14 12 11 40 40 H 1.00900 * 110.99641 * 329.87096 * 15 12 11 41 41 H 1.09000 * 109.47375 * 300.00103 * 16 15 12 42 42 H 1.09006 * 109.47157 * 59.99856 * 16 15 12 43 43 H 0.97008 * 119.99869 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1842 1.1040 0.0000 4 16 3.8310 0.7031 -0.0007 5 6 3.6017 -1.0018 -0.0018 6 6 2.2353 -1.1868 -0.0010 7 6 1.6038 -2.5179 -0.0020 8 8 0.6362 -2.7326 0.7027 9 7 2.0984 -3.4978 -0.7841 10 6 3.3196 -3.2692 -1.5605 11 6 1.4149 -4.7914 -0.8579 12 6 0.2927 -4.7169 -1.8953 13 1 -0.4565 -3.9956 -1.5688 14 6 -0.3565 -6.0943 -2.0442 15 7 0.8480 -4.2949 -3.1881 16 6 -0.1740 -3.6318 -4.0088 17 6 0.4315 -3.2135 -5.3240 18 8 1.5996 -3.4446 -5.5546 19 7 -0.3250 -2.5827 -6.2438 20 6 0.2260 -2.2017 -7.4400 21 1 1.2661 -2.4075 -7.6453 22 6 -0.5539 -1.5508 -8.3882 23 7 -1.8194 -1.3000 -8.1381 24 14 0.1970 -1.0311 -10.0177 25 1 0.0423 -2.1282 -11.0064 26 1 -0.4944 0.1852 -10.5157 27 1 1.6399 -0.7370 -9.8264 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.3658 -1.7651 -0.0029 32 1 4.1892 -3.5112 -0.9495 33 1 3.3105 -3.9032 -2.4470 34 1 3.3676 -2.2230 -1.8625 35 1 2.1279 -5.5630 -1.1488 36 1 0.9929 -5.0355 0.1169 37 1 -1.1563 -6.0412 -2.7829 38 1 0.3928 -6.8156 -2.3706 39 1 -0.7685 -6.4075 -1.0849 40 1 1.6513 -3.6981 -3.0590 41 1 -0.9978 -4.3220 -4.1909 42 1 -0.5464 -2.7518 -3.4844 43 1 -1.2594 -2.3982 -6.0595 44 1 -2.3637 -0.8453 -8.7998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725485748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = -43.901123 kcal Electronic energy + Delta-G solvation = -27837.733043 eV Core-core repulsion = 23916.246522 eV Total energy + Delta-G solvation = -3921.486521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.73199 -40.25130 -39.49279 -38.00703 -36.18341 -35.79841 -33.35527 -33.03255 -31.96269 -30.74335 -28.41122 -28.15261 -27.40592 -25.83171 -24.73283 -22.46205 -21.35498 -21.10968 -20.28569 -19.93120 -18.97979 -18.13086 -17.76708 -17.22736 -17.08128 -16.57873 -16.44295 -16.26097 -15.86692 -15.67261 -15.51142 -15.04706 -14.92036 -14.36817 -14.27228 -13.84747 -13.81091 -13.65609 -13.50265 -13.37129 -13.34388 -13.27053 -12.90334 -12.79922 -12.72206 -12.56618 -12.44931 -12.41024 -12.12332 -11.95207 -11.88659 -11.51206 -11.07145 -10.75623 -10.36356 -10.03162 -9.87045 -9.68165 -9.40585 -8.47452 -5.96537 -0.60294 0.31420 0.60724 0.77800 1.37512 1.41449 1.54209 1.65183 2.01909 2.03980 2.28048 2.87983 3.19604 3.39238 3.44978 3.51155 3.86394 3.91088 4.09395 4.21375 4.21840 4.24734 4.29594 4.38700 4.40723 4.49583 4.52492 4.55610 4.56979 4.63043 4.80192 4.85049 4.96430 5.01291 5.06124 5.29659 5.39932 5.45676 5.50796 5.85755 6.05206 6.17542 6.40931 6.57554 6.94575 7.10610 7.53616 8.07591 8.70025 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.003355 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.985292 B = 8343.822154 C = 9896.350895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.149 3.851 3 N -0.504 5.504 4 S 0.326 5.674 5 C -0.152 4.152 6 C -0.235 4.235 7 C 0.586 3.414 8 O -0.556 6.556 9 N -0.606 5.606 10 C 0.057 3.943 11 C 0.119 3.881 12 C 0.065 3.935 13 H 0.033 0.967 14 C -0.132 4.132 15 N -0.669 5.669 16 C 0.064 3.936 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.082 0.918 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.271 1.271 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.230 0.770 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.344 0.656 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.395 0.605 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.181 -2.687 19.204 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 N -0.326 5.326 4 S 0.481 5.519 5 C -0.301 4.301 6 C -0.256 4.256 7 C 0.372 3.628 8 O -0.435 6.435 9 N -0.337 5.337 10 C -0.085 4.085 11 C -0.004 4.004 12 C -0.045 4.045 13 H 0.051 0.949 14 C -0.191 4.191 15 N -0.305 5.305 16 C -0.069 4.069 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.210 5.210 20 C -0.462 4.462 21 H 0.100 0.900 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.166 0.834 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.228 0.772 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.119 -1.393 19.009 21.579 hybrid contribution -1.392 -0.234 -0.532 1.509 sum 8.726 -1.627 18.477 20.499 Atomic orbital electron populations 1.20580 0.85857 1.03484 1.04400 1.21503 0.99734 0.87194 0.94384 1.76310 1.02434 1.26831 1.27004 1.83938 1.08354 0.95557 1.64020 1.28011 0.98823 1.05309 0.97980 1.20307 0.93608 0.95213 1.16501 1.17553 0.82627 0.83286 0.79344 1.90775 1.28175 1.82252 1.42321 1.47822 1.27716 1.13626 1.44573 1.22413 0.86189 1.03221 0.96686 1.21833 0.94992 0.84021 0.99538 1.22043 0.96324 0.98214 0.87935 0.94871 1.21705 1.00522 0.94742 1.02107 1.60371 1.08325 1.46360 1.15414 1.21551 0.95714 0.98164 0.91422 1.20708 0.87134 0.82299 0.87156 1.90464 1.18451 1.60501 1.80908 1.41943 1.12648 1.51556 1.14807 1.19687 0.97097 1.36224 0.93230 0.90013 1.26064 0.95718 0.96623 1.02862 1.69683 1.06964 1.42088 1.37493 0.84922 0.78184 0.78041 0.77177 1.19558 1.19716 1.19534 0.88647 0.89917 0.91066 0.75398 0.88218 0.89990 0.91093 0.87024 0.88625 0.93298 0.91380 0.90472 0.83370 0.88105 0.93342 0.77196 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 9.41 71.24 0.67 -1.32 16 2 C 0.15 3.79 6.74 43.14 0.29 4.09 16 3 N -0.50 -12.91 11.97 -51.09 -0.61 -13.52 16 4 S 0.33 5.72 23.69 -56.49 -1.34 4.38 16 5 C -0.15 -2.35 8.94 67.74 0.61 -1.74 16 6 C -0.24 -5.29 5.06 -20.72 -0.10 -5.39 16 7 C 0.59 14.29 6.78 86.64 0.59 14.88 16 8 O -0.56 -16.56 15.29 -4.07 -0.06 -16.62 16 9 N -0.61 -12.21 2.50 -850.78 -2.12 -14.33 16 10 C 0.06 0.91 7.88 127.77 1.01 1.92 16 11 C 0.12 2.28 5.06 86.38 0.44 2.72 16 12 C 0.07 1.58 2.90 44.92 0.13 1.71 16 13 H 0.03 0.92 7.78 -2.39 -0.02 0.90 16 14 C -0.13 -2.73 9.43 71.98 0.68 -2.05 16 15 N -0.67 -20.72 5.94 -495.58 -2.94 -23.66 16 16 C 0.06 2.30 5.96 85.56 0.51 2.82 16 17 C 0.44 20.99 7.82 87.66 0.69 21.67 16 18 O -0.62 -33.25 15.78 -3.07 -0.05 -33.30 16 19 N -0.57 -29.66 5.29 -306.99 -1.62 -31.29 16 20 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 23 N -0.92 -50.13 13.05 21.67 0.28 -49.85 16 24 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.87 6.94 -2.39 -0.02 1.86 16 31 H 0.23 1.64 6.43 -2.91 -0.02 1.62 16 32 H 0.10 0.82 7.32 -2.39 -0.02 0.80 16 33 H 0.08 1.55 6.67 -2.39 -0.02 1.54 16 34 H 0.07 1.23 5.85 -2.39 -0.01 1.21 16 35 H 0.11 1.71 8.03 -2.38 -0.02 1.69 16 36 H 0.10 1.80 7.53 -2.39 -0.02 1.78 16 37 H 0.05 1.11 7.51 -2.39 -0.02 1.09 16 38 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.34 10.85 4.63 -89.69 -0.42 10.44 16 41 H 0.10 3.34 7.50 -2.39 -0.02 3.32 16 42 H 0.05 1.67 8.05 -2.38 -0.02 1.65 16 43 H 0.39 19.70 7.90 -92.70 -0.73 18.97 16 44 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -72.85 375.74 0.25 -72.60 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.09 Total: 39.75 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 6.78 Total: 21.01 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -7.02 Total: -132.65 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.11 Total: -49.92 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.34 Total: 4.38 kcal Total: -72.85 0.25 -72.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725485748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.701 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds