Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29946 * 125.30722 * 2 1 4 4 O 1.41871 * 107.41626 * 180.24113 * 3 2 1 5 5 N 1.41883 * 106.38605 * 359.72022 * 4 3 2 6 6 C 1.29945 * 107.41285 * 359.97438 * 5 4 3 7 7 C 1.50706 * 125.30308 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.46736 * 90.03132 * 7 6 5 9 9 C 1.46905 * 110.99436 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.78155 * 36.78666 * 9 8 7 11 11 C 1.55157 * 110.71914 * 273.53880 * 9 8 7 12 12 C 1.54901 * 101.58260 * 206.13854 * 11 9 8 13 13 N 1.47426 * 104.83400 * 37.01041 * 12 11 9 14 14 C 1.34781 * 125.64903 * 155.82465 * 13 12 11 15 15 O 1.21282 * 119.99914 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99859 * 0.02598 * 14 13 12 17 17 S 1.80998 * 109.46848 * 180.02562 * 16 14 13 18 18 C 1.76205 * 100.00130 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99475 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00180 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99725 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99859 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47230 * 90.00183 * 22 20 18 24 24 H 1.48506 * 109.46796 * 209.99821 * 22 20 18 25 25 H 1.48502 * 109.47249 * 329.99393 * 22 20 18 26 26 C 1.47019 * 108.70376 * 335.87327 * 13 12 11 27 27 H 1.09000 * 109.88042 * 241.64152 * 26 13 12 28 28 C 1.53001 * 109.88261 * 120.47321 * 26 13 12 29 29 H 1.08992 * 109.47676 * 270.23208 * 1 2 3 30 30 H 1.09005 * 109.46855 * 30.23158 * 1 2 3 31 31 H 1.08998 * 109.47338 * 150.22543 * 1 2 3 32 32 H 1.08994 * 109.47018 * 330.02764 * 7 6 5 33 33 H 1.08997 * 109.46940 * 210.02958 * 7 6 5 34 34 H 1.00906 * 110.99617 * 303.95055 * 8 7 6 35 35 H 1.09002 * 111.00633 * 324.21751 * 11 9 8 36 36 H 1.09002 * 110.99939 * 88.02530 * 11 9 8 37 37 H 1.09004 * 110.36831 * 155.84850 * 12 11 9 38 38 H 1.09000 * 110.36793 * 278.06248 * 12 11 9 39 39 H 1.09000 * 109.47035 * 299.99768 * 16 14 13 40 40 H 1.08999 * 109.46876 * 60.00372 * 16 14 13 41 41 H 0.97008 * 119.99605 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.47416 * 302.18643 * 28 26 13 43 43 H 1.08993 * 109.47099 * 62.19782 * 28 26 13 44 44 H 1.09007 * 109.46548 * 182.19195 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0604 0.0000 4 8 3.6082 0.6246 -0.0057 5 7 3.5709 -0.7937 -0.0024 6 6 2.3213 -1.1499 0.0051 7 6 1.8208 -2.5714 0.0115 8 7 1.6648 -3.0293 1.3986 9 6 1.1780 -4.4146 1.4439 10 1 1.6145 -5.0045 0.6381 11 6 -0.3716 -4.4543 1.3763 12 6 -0.6803 -5.7901 2.0972 13 7 0.3148 -5.8724 3.1818 14 6 0.1781 -6.5790 4.3214 15 8 1.0653 -6.5737 5.1483 16 6 -1.0771 -7.3757 4.5679 17 16 -0.9591 -8.2063 6.1718 18 6 -2.5118 -9.0388 6.2002 19 1 -3.1946 -8.9363 5.3698 20 6 -2.8568 -9.8271 7.2892 21 7 -4.0170 -10.4485 7.3106 22 14 -1.6753 -10.0048 8.7252 23 1 -1.9473 -8.9408 9.7247 24 1 -1.8605 -11.3361 9.3567 25 1 -0.2789 -9.8791 8.2358 26 6 1.4805 -5.0550 2.8151 27 1 2.3670 -5.6851 2.7424 28 6 1.6999 -3.9619 3.8629 29 1 -0.3634 0.0042 1.0275 30 1 -0.3633 0.8880 -0.5175 31 1 -0.3634 -0.8920 -0.5103 32 1 2.5372 -3.2111 -0.5040 33 1 0.8583 -2.6200 -0.4976 34 1 2.5291 -2.9331 1.9104 35 1 -0.8079 -3.6112 1.9120 36 1 -0.7170 -4.4785 0.3427 37 1 -1.6895 -5.7748 2.5087 38 1 -0.5645 -6.6279 1.4096 39 1 -1.9378 -6.7069 4.5680 40 1 -1.1954 -8.1202 3.7806 41 1 -4.2582 -10.9992 8.0719 42 1 0.8020 -3.3492 3.9424 43 1 1.9130 -4.4213 4.8281 44 1 2.5413 -3.3363 3.5646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725562703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = 68.360539 kcal Electronic energy + Delta-G solvation = -26670.706655 eV Core-core repulsion = 22754.088165 eV Total energy + Delta-G solvation = -3916.618490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97042 -40.38544 -38.09351 -36.03984 -34.52971 -33.35653 -32.46249 -31.64768 -30.94739 -29.27646 -28.78857 -26.85055 -25.64388 -25.28283 -23.18516 -22.70685 -21.17645 -20.54428 -19.20461 -17.82580 -17.59164 -16.85455 -16.75660 -16.32647 -16.12531 -15.50562 -15.18192 -15.08868 -14.86824 -14.76874 -14.19043 -13.94421 -13.88147 -13.58210 -13.44977 -13.31640 -12.94097 -12.84138 -12.68821 -12.55815 -12.26134 -12.24191 -12.02576 -11.82060 -11.74623 -11.45078 -11.28964 -11.21692 -11.09596 -11.02716 -10.92475 -10.63118 -9.87800 -9.50505 -9.21267 -9.02572 -8.66261 -8.52335 -6.94677 -6.31228 -4.03160 0.02500 1.41476 2.14479 2.57999 2.64612 2.90278 3.11308 3.30288 3.31773 3.48747 3.54280 3.62578 3.95500 4.11323 4.25355 4.31010 4.31070 4.60108 4.63992 4.66106 4.74650 4.79733 4.88801 4.93942 5.03680 5.07905 5.08851 5.11660 5.25922 5.28839 5.35939 5.37047 5.47454 5.54364 5.70955 5.80423 5.92882 5.97506 6.20208 6.25842 6.40944 6.43009 6.58708 7.52354 7.91775 8.38936 8.40166 9.15000 10.77893 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.001981 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.384698 B =14133.876349 C =14460.517788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.090 3.910 3 N -0.280 5.280 4 O 0.025 5.975 5 N -0.270 5.270 6 C 0.081 3.919 7 C 0.121 3.879 8 N -0.669 5.669 9 C 0.077 3.923 10 H 0.068 0.932 11 C -0.121 4.121 12 C 0.098 3.902 13 N -0.619 5.619 14 C 0.549 3.451 15 O -0.514 6.514 16 C -0.117 4.117 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.139 3.861 27 H 0.074 0.926 28 C -0.156 4.156 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.353 0.647 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.875 18.116 -20.064 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 N -0.026 5.026 4 O -0.115 6.115 5 N -0.014 5.014 6 C -0.102 4.102 7 C -0.009 4.009 8 N -0.305 5.305 9 C -0.033 4.033 10 H 0.086 0.914 11 C -0.159 4.159 12 C -0.026 4.026 13 N -0.357 5.357 14 C 0.337 3.663 15 O -0.389 6.389 16 C -0.268 4.268 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.034 3.966 27 H 0.092 0.908 28 C -0.214 4.214 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.175 0.825 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.647 19.057 -18.591 28.317 hybrid contribution -0.557 -1.104 -0.602 1.375 sum 9.090 17.953 -19.193 27.808 Atomic orbital electron populations 1.20580 0.83905 1.04973 1.05356 1.24594 1.00519 0.88598 0.95501 1.79978 0.88971 1.19647 1.14007 1.93414 1.20439 1.13151 1.84545 1.79930 1.17709 0.91775 1.11952 1.24459 0.89720 0.99074 0.96986 1.20609 1.01960 0.86062 0.92236 1.60740 1.37077 1.21780 1.10911 1.22604 0.96679 0.87327 0.96676 0.91450 1.22869 0.94043 0.97859 1.01168 1.22335 0.93611 0.97407 0.89229 1.48457 1.18868 1.49188 1.19144 1.19975 0.88577 0.78271 0.79430 1.90697 1.42178 1.62419 1.43562 1.23255 0.97476 1.01613 1.04445 1.84808 1.27445 1.60202 1.19127 1.22297 1.01311 1.33770 1.09462 0.89383 1.24711 0.95013 0.93795 0.97794 1.69938 1.20568 1.29879 1.31241 0.86739 0.83610 0.78447 0.83076 1.19195 1.19938 1.15937 1.21466 0.89499 0.92389 0.93203 0.90829 1.22018 1.01929 0.97671 0.99778 0.88020 0.89398 0.88715 0.91713 0.87229 0.82485 0.89152 0.89979 0.89852 0.91188 0.88580 0.88582 0.91931 0.91625 0.90827 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.25 10.23 36.01 0.37 0.11 16 2 C 0.09 0.60 7.19 -82.38 -0.59 0.01 16 3 N -0.28 -2.72 12.98 33.74 0.44 -2.28 16 4 O 0.03 0.29 13.71 12.02 0.16 0.45 16 5 N -0.27 -2.58 12.98 33.74 0.44 -2.14 16 6 C 0.08 0.54 6.70 -82.38 -0.55 -0.01 16 7 C 0.12 0.48 5.89 -4.97 -0.03 0.45 16 8 N -0.67 -3.54 5.58 -106.05 -0.59 -4.13 16 9 C 0.08 0.46 3.11 -65.87 -0.20 0.26 16 10 H 0.07 0.34 7.90 -51.93 -0.41 -0.07 16 11 C -0.12 -0.66 6.71 -24.59 -0.17 -0.82 16 12 C 0.10 0.82 6.69 -2.53 -0.02 0.80 16 13 N -0.62 -7.61 3.08 -163.02 -0.50 -8.11 16 14 C 0.55 9.51 7.65 -10.98 -0.08 9.43 16 15 O -0.51 -10.78 14.77 5.56 0.08 -10.69 16 16 C -0.12 -2.21 5.16 36.01 0.19 -2.03 16 17 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 18 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 19 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 20 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.20 13.97 55.49 0.78 -25.43 16 22 Si 0.86 21.57 27.74 -169.99 -4.72 16.86 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 C 0.14 1.38 3.41 -66.95 -0.23 1.15 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 C -0.16 -1.66 8.40 37.16 0.31 -1.34 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.06 7.13 -51.93 -0.37 -0.31 16 32 H 0.06 0.24 8.09 -51.93 -0.42 -0.18 16 33 H 0.11 0.18 7.12 -51.93 -0.37 -0.19 16 34 H 0.35 2.19 6.43 -39.29 -0.25 1.94 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.71 7.47 -51.93 -0.39 0.33 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 1.69 7.85 -51.91 -0.41 1.28 16 40 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.04 6.76 -51.93 -0.35 0.69 16 44 H 0.06 0.50 6.23 -51.92 -0.32 0.18 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -35.30 377.45 -7.26 -42.56 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.25 Total: -3.45 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.79 Total: -3.77 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.56 Total: -42.10 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.25 Total: -10.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.30 -7.26 -42.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725562703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.919 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds