Wall clock time and date at job start Sat Apr 11 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29946 * 125.30722 * 2 1 4 4 O 1.41871 * 107.41626 * 180.24113 * 3 2 1 5 5 N 1.41883 * 106.38605 * 359.72022 * 4 3 2 6 6 C 1.29945 * 107.41285 * 359.97438 * 5 4 3 7 7 C 1.50706 * 125.30308 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.46736 * 90.03132 * 7 6 5 9 9 C 1.46905 * 110.99436 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.78155 * 36.78666 * 9 8 7 11 11 C 1.55157 * 110.71914 * 273.53880 * 9 8 7 12 12 C 1.54901 * 101.58260 * 206.13854 * 11 9 8 13 13 N 1.47426 * 104.83400 * 37.01041 * 12 11 9 14 14 C 1.34781 * 125.64903 * 155.82465 * 13 12 11 15 15 O 1.21282 * 119.99914 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99859 * 0.02598 * 14 13 12 17 17 S 1.80998 * 109.46848 * 180.02562 * 16 14 13 18 18 C 1.76205 * 100.00130 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99475 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00180 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99725 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99859 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47230 * 90.00183 * 22 20 18 24 24 H 1.48506 * 109.46796 * 209.99821 * 22 20 18 25 25 H 1.48502 * 109.47249 * 329.99393 * 22 20 18 26 26 C 1.47019 * 108.70376 * 335.87327 * 13 12 11 27 27 H 1.09000 * 109.88042 * 241.64152 * 26 13 12 28 28 C 1.53001 * 109.88261 * 120.47321 * 26 13 12 29 29 H 1.08992 * 109.47676 * 270.23208 * 1 2 3 30 30 H 1.09005 * 109.46855 * 30.23158 * 1 2 3 31 31 H 1.08998 * 109.47338 * 150.22543 * 1 2 3 32 32 H 1.08994 * 109.47018 * 330.02764 * 7 6 5 33 33 H 1.08997 * 109.46940 * 210.02958 * 7 6 5 34 34 H 1.00906 * 110.99617 * 303.95055 * 8 7 6 35 35 H 1.09002 * 111.00633 * 324.21751 * 11 9 8 36 36 H 1.09002 * 110.99939 * 88.02530 * 11 9 8 37 37 H 1.09004 * 110.36831 * 155.84850 * 12 11 9 38 38 H 1.09000 * 110.36793 * 278.06248 * 12 11 9 39 39 H 1.09000 * 109.47035 * 299.99768 * 16 14 13 40 40 H 1.08999 * 109.46876 * 60.00372 * 16 14 13 41 41 H 0.97008 * 119.99605 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.47416 * 302.18643 * 28 26 13 43 43 H 1.08993 * 109.47099 * 62.19782 * 28 26 13 44 44 H 1.09007 * 109.46548 * 182.19195 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0604 0.0000 4 8 3.6082 0.6246 -0.0057 5 7 3.5709 -0.7937 -0.0024 6 6 2.3213 -1.1499 0.0051 7 6 1.8208 -2.5714 0.0115 8 7 1.6648 -3.0293 1.3986 9 6 1.1780 -4.4146 1.4439 10 1 1.6145 -5.0045 0.6381 11 6 -0.3716 -4.4543 1.3763 12 6 -0.6803 -5.7901 2.0972 13 7 0.3148 -5.8724 3.1818 14 6 0.1781 -6.5790 4.3214 15 8 1.0653 -6.5737 5.1483 16 6 -1.0771 -7.3757 4.5679 17 16 -0.9591 -8.2063 6.1718 18 6 -2.5118 -9.0388 6.2002 19 1 -3.1946 -8.9363 5.3698 20 6 -2.8568 -9.8271 7.2892 21 7 -4.0170 -10.4485 7.3106 22 14 -1.6753 -10.0048 8.7252 23 1 -1.9473 -8.9408 9.7247 24 1 -1.8605 -11.3361 9.3567 25 1 -0.2789 -9.8791 8.2358 26 6 1.4805 -5.0550 2.8151 27 1 2.3670 -5.6851 2.7424 28 6 1.6999 -3.9619 3.8629 29 1 -0.3634 0.0042 1.0275 30 1 -0.3633 0.8880 -0.5175 31 1 -0.3634 -0.8920 -0.5103 32 1 2.5372 -3.2111 -0.5040 33 1 0.8583 -2.6200 -0.4976 34 1 2.5291 -2.9331 1.9104 35 1 -0.8079 -3.6112 1.9120 36 1 -0.7170 -4.4785 0.3427 37 1 -1.6895 -5.7748 2.5087 38 1 -0.5645 -6.6279 1.4096 39 1 -1.9378 -6.7069 4.5680 40 1 -1.1954 -8.1202 3.7806 41 1 -4.2582 -10.9992 8.0719 42 1 0.8020 -3.3492 3.9424 43 1 1.9130 -4.4213 4.8281 44 1 2.5413 -3.3363 3.5646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725562703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:12 Heat of formation + Delta-G solvation = 41.947660 kcal Electronic energy + Delta-G solvation = -26671.852004 eV Core-core repulsion = 22754.088165 eV Total energy + Delta-G solvation = -3917.763839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.52114 -41.32502 -39.09949 -36.71577 -35.08323 -34.66741 -34.03632 -32.47470 -31.80938 -30.01936 -29.60171 -27.85308 -27.43324 -25.92518 -24.02817 -23.20374 -21.68064 -21.25986 -20.32399 -19.56503 -18.22726 -17.98846 -17.42462 -17.14754 -17.03690 -16.82524 -16.36214 -16.06630 -15.82910 -15.63886 -15.18741 -14.92326 -14.77812 -14.51353 -14.27403 -14.18028 -13.75874 -13.74173 -13.44178 -13.32973 -13.28147 -13.11046 -13.00561 -12.84598 -12.74992 -12.67644 -12.55588 -12.27999 -12.08236 -11.87180 -11.76124 -11.62354 -11.57846 -11.16905 -10.88281 -10.52268 -9.71456 -9.56793 -8.99782 -8.51192 -6.21831 -0.54310 0.92885 0.98407 1.31166 1.45561 1.51426 1.54340 1.56643 2.04483 2.11699 2.24997 2.69325 2.81254 2.87093 3.14098 3.33277 3.65381 3.72527 3.82574 3.96251 4.07264 4.19644 4.24529 4.32436 4.37092 4.43036 4.48468 4.51388 4.60760 4.63685 4.69650 4.77362 4.80954 4.84072 5.06884 5.10138 5.21855 5.32319 5.34912 5.50903 5.71434 5.83691 5.88171 6.09750 6.11994 6.41840 6.94290 7.12220 8.60945 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.001981 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.384698 B =14133.876349 C =14460.517788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.104 3.896 3 N -0.315 5.315 4 O -0.023 6.023 5 N -0.298 5.298 6 C 0.097 3.903 7 C 0.124 3.876 8 N -0.671 5.671 9 C 0.094 3.906 10 H 0.090 0.910 11 C -0.108 4.108 12 C 0.083 3.917 13 N -0.609 5.609 14 C 0.547 3.453 15 O -0.562 6.562 16 C -0.101 4.101 17 S -0.180 6.180 18 C -0.526 4.526 19 H 0.064 0.936 20 C 0.046 3.954 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.238 1.238 26 C 0.131 3.869 27 H 0.063 0.937 28 C -0.147 4.147 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.347 0.653 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.277 0.723 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.158 18.557 -22.399 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 N -0.064 5.064 4 O -0.155 6.155 5 N -0.045 5.045 6 C -0.087 4.087 7 C -0.006 4.006 8 N -0.307 5.307 9 C -0.016 4.016 10 H 0.108 0.892 11 C -0.146 4.146 12 C -0.039 4.039 13 N -0.344 5.344 14 C 0.335 3.665 15 O -0.440 6.440 16 C -0.251 4.251 17 S 0.047 5.953 18 C -0.673 4.673 19 H 0.082 0.918 20 C -0.159 4.159 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.162 1.162 26 C 0.027 3.973 27 H 0.082 0.918 28 C -0.205 4.205 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.951 19.549 -20.987 30.046 hybrid contribution -0.421 -1.201 -0.031 1.273 sum 8.529 18.348 -21.018 29.174 Atomic orbital electron populations 1.20865 0.80806 1.06920 1.06292 1.25304 1.02112 0.87773 0.92718 1.79955 0.88724 1.21228 1.16497 1.93385 1.21823 1.14212 1.86084 1.79895 1.19585 0.91146 1.13843 1.24992 0.88853 1.00393 0.94494 1.20879 1.04046 0.84024 0.91640 1.60734 1.36857 1.21303 1.11762 1.22499 0.97413 0.87527 0.94191 0.89219 1.22897 0.93105 0.95631 1.02982 1.22759 0.92522 1.00207 0.88389 1.48405 1.20554 1.47309 1.18158 1.19631 0.87390 0.78844 0.80662 1.90682 1.43340 1.64366 1.45661 1.23199 0.99311 1.01928 1.00694 1.84767 1.25428 1.60873 1.24245 1.22430 1.02326 1.33878 1.08694 0.91751 1.25529 0.96483 0.93664 1.00248 1.70010 1.22078 1.30817 1.32396 0.85895 0.81419 0.79083 0.80143 1.18787 1.18351 1.16242 1.21687 0.88294 0.91861 0.95471 0.91845 1.21906 1.02660 0.97864 0.98108 0.87232 0.88891 0.85391 0.90692 0.83533 0.83189 0.89270 0.85935 0.89952 0.89444 0.87175 0.87147 0.91384 0.91708 0.94932 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.15 10.23 71.24 0.73 0.58 16 2 C 0.10 1.14 7.19 43.49 0.31 1.45 16 3 N -0.31 -6.03 12.98 -47.16 -0.61 -6.64 16 4 O -0.02 -0.53 13.71 70.17 0.96 0.43 16 5 N -0.30 -5.52 12.98 -47.15 -0.61 -6.13 16 6 C 0.10 1.05 6.70 43.49 0.29 1.34 16 7 C 0.12 0.39 5.89 85.56 0.50 0.89 16 8 N -0.67 -4.32 5.58 -489.43 -2.73 -7.05 16 9 C 0.09 0.69 3.11 46.10 0.14 0.83 16 10 H 0.09 0.37 7.90 -2.39 -0.02 0.35 16 11 C -0.11 -0.57 6.71 31.98 0.21 -0.36 16 12 C 0.08 1.07 6.69 86.85 0.58 1.65 16 13 N -0.61 -13.75 3.08 -788.05 -2.43 -16.17 16 14 C 0.55 18.64 7.65 87.66 0.67 19.31 16 15 O -0.56 -23.97 14.77 -3.04 -0.04 -24.01 16 16 C -0.10 -3.72 5.16 71.24 0.37 -3.35 16 17 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 18 C -0.53 -30.17 10.04 67.95 0.68 -29.49 16 19 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 20 C 0.05 2.69 5.50 84.86 0.47 3.16 16 21 N -0.92 -55.03 13.97 21.65 0.30 -54.72 16 22 Si 0.91 44.79 27.74 68.60 1.90 46.69 16 23 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 26 C 0.13 2.31 3.41 45.34 0.15 2.46 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 C -0.15 -3.00 8.40 71.98 0.60 -2.39 16 29 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.13 -0.63 7.13 -2.39 -0.02 -0.65 16 32 H 0.08 0.18 8.09 -2.39 -0.02 0.16 16 33 H 0.15 -0.57 7.12 -2.39 -0.02 -0.59 16 34 H 0.35 3.27 6.43 -89.69 -0.58 2.70 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.08 1.12 7.47 -2.38 -0.02 1.11 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 3.75 7.85 -2.40 -0.02 3.73 16 40 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 41 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.03 0.94 6.76 -2.39 -0.02 0.92 16 44 H 0.08 1.25 6.23 -2.38 -0.01 1.24 16 Total: -1.00 -82.46 377.45 1.83 -80.62 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 0.42 Total: 0.96 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.72 Total: -3.92 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -6.08 Total: -90.71 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.92 Total: -23.58 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -82.46 1.83 -80.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725562703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.570 kcal (2) G-P(sol) polarization free energy of solvation -82.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds