Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29957 * 125.29872 * 2 1 4 4 O 1.41884 * 107.41007 * 180.24628 * 3 2 1 5 5 N 1.41868 * 106.38893 * 359.71722 * 4 3 2 6 6 C 1.29960 * 107.41637 * 359.97438 * 5 4 3 7 7 C 1.50696 * 125.30352 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47118 * 90.03066 * 7 6 5 9 9 C 1.46901 * 110.99871 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.64384 * 34.29471 * 9 8 7 11 11 C 1.55164 * 110.86867 * 271.04594 * 9 8 7 12 12 C 1.54913 * 101.57873 * 206.06516 * 11 9 8 13 13 N 1.47429 * 104.83336 * 37.00962 * 12 11 9 14 14 C 1.34767 * 125.64582 * 155.90632 * 13 12 11 15 15 O 1.21290 * 120.00019 * 179.97438 * 14 13 12 16 16 C 1.50705 * 120.00427 * 359.95815 * 14 13 12 17 17 S 1.81000 * 109.47299 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99961 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99818 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00034 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47207 * 89.99953 * 22 20 18 24 24 H 1.48503 * 109.47253 * 210.00051 * 22 20 18 25 25 H 1.48496 * 109.46965 * 329.99938 * 22 20 18 26 26 C 1.47026 * 108.70199 * 335.87085 * 13 12 11 27 27 H 1.08995 * 109.87918 * 120.47947 * 26 13 12 28 28 C 1.52993 * 109.87931 * 241.64207 * 26 13 12 29 29 H 1.09001 * 109.47303 * 270.22310 * 1 2 3 30 30 H 1.08991 * 109.47338 * 30.22755 * 1 2 3 31 31 H 1.09003 * 109.47022 * 150.23526 * 1 2 3 32 32 H 1.08997 * 109.47513 * 330.02068 * 7 6 5 33 33 H 1.09009 * 109.46828 * 210.02586 * 7 6 5 34 34 H 1.00894 * 111.00281 * 56.03877 * 8 7 6 35 35 H 1.09001 * 111.00154 * 324.13750 * 11 9 8 36 36 H 1.08998 * 111.00269 * 87.99066 * 11 9 8 37 37 H 1.08998 * 110.36487 * 278.17111 * 12 11 9 38 38 H 1.08997 * 110.45987 * 155.89565 * 12 11 9 39 39 H 1.08995 * 109.46917 * 300.00272 * 16 14 13 40 40 H 1.09000 * 109.46563 * 59.99933 * 16 14 13 41 41 H 0.97000 * 120.00542 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.47029 * 177.80965 * 28 26 13 43 43 H 1.08999 * 109.47377 * 297.80919 * 28 26 13 44 44 H 1.08998 * 109.47566 * 57.80911 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2579 1.0606 0.0000 4 8 3.6081 0.6248 -0.0058 5 7 3.5710 -0.7934 -0.0025 6 6 2.3213 -1.1498 0.0051 7 6 1.8211 -2.5713 0.0115 8 7 1.6653 -3.0293 1.3986 9 6 1.1775 -4.4142 1.4440 10 1 1.5802 -4.9910 0.6114 11 6 -0.3737 -4.4543 1.4401 12 6 -0.6517 -5.8017 2.1522 13 7 0.3877 -5.9000 3.1931 14 6 0.2993 -6.6258 4.3252 15 8 1.2205 -6.6332 5.1143 16 6 -0.9441 -7.4278 4.6110 17 16 -0.7585 -8.2851 6.1943 18 6 -2.3083 -9.1196 6.2739 19 1 -3.0259 -9.0032 5.4752 20 6 -2.6069 -9.9264 7.3631 21 7 -1.7321 -10.0686 8.3363 22 14 -4.2503 -10.8105 7.4479 23 1 -4.1280 -12.1450 6.8083 24 1 -4.6500 -10.9771 8.8684 25 1 -5.2792 -10.0120 6.7346 26 6 1.5370 -5.0758 2.7911 27 1 1.7240 -4.3088 3.5426 28 6 2.7761 -5.9573 2.6235 29 1 -0.3634 0.0040 1.0277 30 1 -0.3633 0.8878 -0.5173 31 1 -0.3633 -0.8921 -0.5102 32 1 2.5374 -3.2109 -0.5041 33 1 0.8584 -2.6200 -0.4975 34 1 1.0555 -2.4143 1.9162 35 1 -0.7874 -3.6202 2.0069 36 1 -0.7617 -4.4632 0.4216 37 1 -0.5624 -6.6285 1.4476 38 1 -1.6430 -5.7957 2.6053 39 1 -1.8042 -6.7600 4.6585 40 1 -1.0953 -8.1590 3.8170 41 1 -1.9406 -10.6327 9.0974 42 1 3.6141 -5.3462 2.2880 43 1 3.0240 -6.4210 3.5783 44 1 2.5733 -6.7327 1.8848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725562705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = 62.101040 kcal Electronic energy + Delta-G solvation = -26496.329524 eV Core-core repulsion = 22579.439602 eV Total energy + Delta-G solvation = -3916.889922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97628 -40.25326 -37.99059 -36.02957 -34.50910 -33.28944 -32.45290 -31.75032 -30.83869 -29.35737 -28.63762 -27.09736 -25.50876 -24.64420 -22.94419 -22.80312 -21.40285 -21.05674 -19.00065 -17.73166 -17.41386 -17.08458 -16.68255 -16.40407 -15.99855 -15.21981 -15.00330 -14.86218 -14.81984 -14.34361 -14.08146 -14.01147 -13.89101 -13.81390 -13.78458 -13.31594 -12.88475 -12.85308 -12.64145 -12.57107 -12.28614 -12.22948 -11.99255 -11.77564 -11.69921 -11.38006 -11.29229 -11.15497 -11.09031 -11.04597 -10.95714 -10.78286 -9.83954 -9.39054 -9.08972 -9.08136 -8.55379 -8.25489 -6.52599 -6.23809 -3.94656 0.03810 1.38955 2.14598 2.59757 2.81147 3.04821 3.20069 3.20292 3.25676 3.28304 3.52578 3.66905 4.02735 4.11698 4.17123 4.18340 4.29274 4.50071 4.62476 4.66275 4.69950 4.85989 4.89257 4.96071 5.05392 5.08113 5.11251 5.23178 5.24912 5.35188 5.39445 5.49300 5.58138 5.64579 5.72371 5.86701 5.96718 6.09636 6.26597 6.31045 6.42501 6.51253 6.65686 7.56840 7.64271 8.32637 8.55065 9.21302 10.83559 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.001923 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.669545 B =14560.225648 C =15029.657713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.077 3.923 3 N -0.277 5.277 4 O 0.026 5.974 5 N -0.249 5.249 6 C 0.075 3.925 7 C 0.125 3.875 8 N -0.671 5.671 9 C 0.084 3.916 10 H 0.101 0.899 11 C -0.166 4.166 12 C 0.104 3.896 13 N -0.625 5.625 14 C 0.550 3.450 15 O -0.510 6.510 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.147 3.853 27 H 0.081 0.919 28 C -0.159 4.159 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.350 0.650 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.269 0.731 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 17.120 -22.448 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 N -0.022 5.022 4 O -0.115 6.115 5 N 0.008 4.992 6 C -0.109 4.109 7 C -0.005 4.005 8 N -0.303 5.303 9 C -0.027 4.027 10 H 0.119 0.881 11 C -0.205 4.205 12 C -0.020 4.020 13 N -0.363 5.363 14 C 0.338 3.662 15 O -0.384 6.384 16 C -0.297 4.297 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C 0.043 3.957 27 H 0.099 0.901 28 C -0.217 4.217 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.169 0.831 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.521 17.647 -20.948 27.761 hybrid contribution -3.645 -0.813 -1.129 3.902 sum 0.876 16.833 -22.077 27.776 Atomic orbital electron populations 1.20614 0.84179 1.05387 1.05140 1.24633 1.00354 0.89030 0.96603 1.79960 0.89205 1.19670 1.13369 1.93427 1.20118 1.13675 1.84321 1.80000 1.17570 0.91029 1.10599 1.24434 0.89904 0.98643 0.97932 1.20544 1.01128 0.87002 0.91841 1.60286 1.55779 1.03193 1.11030 1.22731 0.92717 0.88637 0.98609 0.88069 1.23540 0.96823 0.98634 1.01524 1.22178 0.92834 0.96615 0.90365 1.48583 1.17671 1.49144 1.20886 1.19998 0.88890 0.78319 0.78995 1.90710 1.39723 1.62416 1.45551 1.23511 0.97384 1.01779 1.07053 1.85429 1.24603 1.57104 1.16187 1.22848 1.02484 1.33508 1.09522 0.90969 1.24994 0.97950 0.95999 0.94660 1.70014 1.34554 1.36950 1.08680 0.86169 0.82126 0.79642 0.77563 1.20266 1.20742 1.19717 1.21324 0.86610 0.92902 0.94856 0.90058 1.22089 0.96760 0.99561 1.03295 0.88300 0.88954 0.88815 0.87638 0.91153 0.83079 0.90131 0.89692 0.91248 0.90121 0.89430 0.89379 0.92157 0.91615 0.90800 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.18 10.23 36.00 0.37 0.18 16 2 C 0.08 0.48 7.19 -82.38 -0.59 -0.11 16 3 N -0.28 -2.65 12.98 33.74 0.44 -2.21 16 4 O 0.03 0.30 13.71 12.02 0.16 0.47 16 5 N -0.25 -2.55 12.98 33.74 0.44 -2.11 16 6 C 0.07 0.51 6.70 -82.38 -0.55 -0.04 16 7 C 0.12 0.51 5.90 -4.98 -0.03 0.48 16 8 N -0.67 -3.83 6.29 -106.05 -0.67 -4.50 16 9 C 0.08 0.53 2.77 -65.87 -0.18 0.35 16 10 H 0.10 0.56 7.57 -51.93 -0.39 0.17 16 11 C -0.17 -0.84 6.67 -24.58 -0.16 -1.00 16 12 C 0.10 0.90 6.69 -2.52 -0.02 0.89 16 13 N -0.62 -8.15 3.06 -163.02 -0.50 -8.65 16 14 C 0.55 10.13 7.66 -10.99 -0.08 10.04 16 15 O -0.51 -11.46 14.91 5.55 0.08 -11.38 16 16 C -0.15 -2.90 5.16 36.01 0.19 -2.71 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 19 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 22 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 C 0.15 1.62 3.21 -66.95 -0.22 1.41 16 27 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 28 C -0.16 -1.88 9.09 37.15 0.34 -1.55 16 29 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 -0.03 7.13 -51.93 -0.37 -0.40 16 32 H 0.11 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.07 0.08 7.13 -51.92 -0.37 -0.29 16 34 H 0.35 1.73 8.26 -39.29 -0.32 1.41 16 35 H 0.08 0.38 7.80 -51.93 -0.41 -0.02 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.71 7.47 -51.93 -0.39 0.32 16 39 H 0.09 1.60 7.85 -51.92 -0.41 1.19 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.13 6.90 -51.93 -0.36 0.77 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -36.58 384.20 -7.86 -44.43 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -6.36 Total: -4.10 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -0.75 Total: -4.82 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.44 Total: -42.65 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.25 Total: -10.91 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.58 -7.86 -44.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725562705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.534 kcal (2) G-P(sol) polarization free energy of solvation -36.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds