Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29957 * 125.29872 * 2 1 4 4 O 1.41884 * 107.41007 * 180.24628 * 3 2 1 5 5 N 1.41868 * 106.38893 * 359.71722 * 4 3 2 6 6 C 1.29960 * 107.41637 * 359.97438 * 5 4 3 7 7 C 1.50696 * 125.30352 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47118 * 90.03066 * 7 6 5 9 9 C 1.46901 * 110.99871 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.64384 * 34.29471 * 9 8 7 11 11 C 1.55164 * 110.86867 * 271.04594 * 9 8 7 12 12 C 1.54913 * 101.57873 * 206.06516 * 11 9 8 13 13 N 1.47429 * 104.83336 * 37.00962 * 12 11 9 14 14 C 1.34767 * 125.64582 * 155.90632 * 13 12 11 15 15 O 1.21290 * 120.00019 * 179.97438 * 14 13 12 16 16 C 1.50705 * 120.00427 * 359.95815 * 14 13 12 17 17 S 1.81000 * 109.47299 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99961 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99818 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00034 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47207 * 89.99953 * 22 20 18 24 24 H 1.48503 * 109.47253 * 210.00051 * 22 20 18 25 25 H 1.48496 * 109.46965 * 329.99938 * 22 20 18 26 26 C 1.47026 * 108.70199 * 335.87085 * 13 12 11 27 27 H 1.08995 * 109.87918 * 120.47947 * 26 13 12 28 28 C 1.52993 * 109.87931 * 241.64207 * 26 13 12 29 29 H 1.09001 * 109.47303 * 270.22310 * 1 2 3 30 30 H 1.08991 * 109.47338 * 30.22755 * 1 2 3 31 31 H 1.09003 * 109.47022 * 150.23526 * 1 2 3 32 32 H 1.08997 * 109.47513 * 330.02068 * 7 6 5 33 33 H 1.09009 * 109.46828 * 210.02586 * 7 6 5 34 34 H 1.00894 * 111.00281 * 56.03877 * 8 7 6 35 35 H 1.09001 * 111.00154 * 324.13750 * 11 9 8 36 36 H 1.08998 * 111.00269 * 87.99066 * 11 9 8 37 37 H 1.08998 * 110.36487 * 278.17111 * 12 11 9 38 38 H 1.08997 * 110.45987 * 155.89565 * 12 11 9 39 39 H 1.08995 * 109.46917 * 300.00272 * 16 14 13 40 40 H 1.09000 * 109.46563 * 59.99933 * 16 14 13 41 41 H 0.97000 * 120.00542 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.47029 * 177.80965 * 28 26 13 43 43 H 1.08999 * 109.47377 * 297.80919 * 28 26 13 44 44 H 1.08998 * 109.47566 * 57.80911 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2579 1.0606 0.0000 4 8 3.6081 0.6248 -0.0058 5 7 3.5710 -0.7934 -0.0025 6 6 2.3213 -1.1498 0.0051 7 6 1.8211 -2.5713 0.0115 8 7 1.6653 -3.0293 1.3986 9 6 1.1775 -4.4142 1.4440 10 1 1.5802 -4.9910 0.6114 11 6 -0.3737 -4.4543 1.4401 12 6 -0.6517 -5.8017 2.1522 13 7 0.3877 -5.9000 3.1931 14 6 0.2993 -6.6258 4.3252 15 8 1.2205 -6.6332 5.1143 16 6 -0.9441 -7.4278 4.6110 17 16 -0.7585 -8.2851 6.1943 18 6 -2.3083 -9.1196 6.2739 19 1 -3.0259 -9.0032 5.4752 20 6 -2.6069 -9.9264 7.3631 21 7 -1.7321 -10.0686 8.3363 22 14 -4.2503 -10.8105 7.4479 23 1 -4.1280 -12.1450 6.8083 24 1 -4.6500 -10.9771 8.8684 25 1 -5.2792 -10.0120 6.7346 26 6 1.5370 -5.0758 2.7911 27 1 1.7240 -4.3088 3.5426 28 6 2.7761 -5.9573 2.6235 29 1 -0.3634 0.0040 1.0277 30 1 -0.3633 0.8878 -0.5173 31 1 -0.3633 -0.8921 -0.5102 32 1 2.5374 -3.2109 -0.5041 33 1 0.8584 -2.6200 -0.4975 34 1 1.0555 -2.4143 1.9162 35 1 -0.7874 -3.6202 2.0069 36 1 -0.7617 -4.4632 0.4216 37 1 -0.5624 -6.6285 1.4476 38 1 -1.6430 -5.7957 2.6053 39 1 -1.8042 -6.7600 4.6585 40 1 -1.0953 -8.1590 3.8170 41 1 -1.9406 -10.6327 9.0974 42 1 3.6141 -5.3462 2.2880 43 1 3.0240 -6.4210 3.5783 44 1 2.5733 -6.7327 1.8848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725562705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = 33.716918 kcal Electronic energy + Delta-G solvation = -26497.560352 eV Core-core repulsion = 22579.439602 eV Total energy + Delta-G solvation = -3918.120750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52378 -41.24459 -39.03938 -36.73763 -35.04826 -34.57982 -33.97727 -32.68971 -31.69278 -29.96264 -29.63525 -27.75113 -27.60620 -25.33312 -23.83021 -23.29090 -21.99247 -21.60574 -20.33121 -19.43409 -18.09784 -17.95664 -17.51160 -17.12009 -16.87510 -16.80060 -16.24472 -16.07429 -15.61245 -15.41451 -15.06559 -14.66771 -14.61016 -14.37342 -14.31165 -14.21763 -14.00134 -13.78898 -13.54416 -13.31861 -13.15428 -13.11649 -12.88987 -12.85267 -12.80768 -12.63442 -12.48603 -12.40705 -12.04049 -11.91011 -11.74916 -11.66663 -11.62508 -11.13620 -10.84353 -10.25997 -9.65841 -9.45890 -8.67101 -8.33839 -6.12479 -0.52872 0.92673 1.25756 1.43373 1.46280 1.52337 1.57092 1.62898 2.07032 2.12797 2.28287 2.76776 3.00304 3.15984 3.26659 3.53758 3.57776 3.72186 3.91110 4.00062 4.07767 4.22221 4.25666 4.31747 4.40925 4.41563 4.46738 4.50868 4.60445 4.65991 4.69307 4.76117 4.79939 4.83640 5.04889 5.10468 5.15645 5.18565 5.28886 5.42144 5.51561 5.86345 5.87798 6.20320 6.27628 6.46754 7.07166 7.19803 8.75348 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.001923 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.669545 B =14560.225648 C =15029.657713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.095 3.905 3 N -0.312 5.312 4 O -0.025 6.025 5 N -0.287 5.287 6 C 0.091 3.909 7 C 0.128 3.872 8 N -0.687 5.687 9 C 0.102 3.898 10 H 0.121 0.879 11 C -0.148 4.148 12 C 0.087 3.913 13 N -0.614 5.614 14 C 0.544 3.456 15 O -0.566 6.566 16 C -0.117 4.117 17 S -0.156 6.156 18 C -0.543 4.543 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.255 1.255 26 C 0.139 3.861 27 H 0.058 0.942 28 C -0.153 4.153 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.356 0.644 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 17.226 -25.932 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 N -0.062 5.062 4 O -0.157 6.157 5 N -0.034 5.034 6 C -0.094 4.094 7 C -0.001 4.001 8 N -0.320 5.320 9 C -0.008 4.008 10 H 0.138 0.862 11 C -0.187 4.187 12 C -0.035 4.035 13 N -0.349 5.349 14 C 0.332 3.668 15 O -0.445 6.445 16 C -0.269 4.269 17 S 0.071 5.929 18 C -0.691 4.691 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.179 1.179 26 C 0.035 3.965 27 H 0.076 0.924 28 C -0.212 4.212 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.176 0.824 35 H 0.108 0.892 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.919 17.823 -24.505 30.314 hybrid contribution -2.526 -0.810 -0.131 2.656 sum -1.607 17.013 -24.636 29.982 Atomic orbital electron populations 1.20957 0.80528 1.07378 1.06609 1.25404 1.02169 0.87867 0.93373 1.79935 0.88796 1.21336 1.16107 1.93396 1.21810 1.14533 1.86010 1.79957 1.19844 0.90661 1.12907 1.25035 0.89000 1.00165 0.95165 1.20781 1.03411 0.84805 0.91147 1.60090 1.56523 1.03029 1.12380 1.22512 0.94000 0.88699 0.95614 0.86151 1.23570 0.95223 0.96359 1.03586 1.22656 0.91478 0.99817 0.89538 1.48498 1.19593 1.47007 1.19781 1.19769 0.87743 0.78975 0.80287 1.90692 1.41167 1.64614 1.47989 1.23293 0.98994 1.01873 1.02695 1.85660 1.25960 1.58930 1.22358 1.23184 1.02392 1.33482 1.10044 0.89760 1.26160 1.02323 0.96796 0.94050 1.70192 1.37109 1.38033 1.09541 0.84936 0.76794 0.78385 0.77760 1.19316 1.20477 1.17924 1.21531 0.85589 0.92040 0.97332 0.92411 1.22015 0.97975 1.00064 1.01109 0.86733 0.88598 0.85212 0.87365 0.86335 0.82393 0.89227 0.85284 0.89548 0.89907 0.87519 0.87592 0.92046 0.90281 0.95314 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.08 10.23 71.23 0.73 0.81 16 2 C 0.10 0.96 7.19 43.49 0.31 1.27 16 3 N -0.31 -5.95 12.98 -47.16 -0.61 -6.56 16 4 O -0.03 -0.61 13.71 70.17 0.96 0.35 16 5 N -0.29 -5.86 12.98 -47.16 -0.61 -6.47 16 6 C 0.09 1.03 6.70 43.48 0.29 1.32 16 7 C 0.13 0.44 5.90 85.56 0.50 0.94 16 8 N -0.69 -5.09 6.29 -489.43 -3.08 -8.16 16 9 C 0.10 0.83 2.77 46.11 0.13 0.96 16 10 H 0.12 0.63 7.57 -2.39 -0.02 0.61 16 11 C -0.15 -0.58 6.67 31.99 0.21 -0.37 16 12 C 0.09 1.13 6.69 86.86 0.58 1.71 16 13 N -0.61 -15.00 3.06 -788.05 -2.42 -17.42 16 14 C 0.54 20.26 7.66 87.66 0.67 20.93 16 15 O -0.57 -26.87 14.91 -3.06 -0.05 -26.91 16 16 C -0.12 -4.60 5.16 71.24 0.37 -4.23 16 17 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 18 C -0.54 -30.62 9.50 67.95 0.65 -29.98 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.64 5.49 84.86 0.47 1.10 16 21 N -0.91 -55.96 13.22 21.65 0.29 -55.68 16 22 Si 1.00 42.89 29.55 68.60 2.03 44.91 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 26 C 0.14 2.85 3.21 45.34 0.15 3.00 16 27 H 0.06 1.47 8.03 -2.39 -0.02 1.45 16 28 C -0.15 -3.61 9.09 71.98 0.65 -2.95 16 29 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.13 -1.00 7.13 -2.39 -0.02 -1.02 16 32 H 0.11 0.42 8.08 -2.39 -0.02 0.40 16 33 H 0.12 -0.65 7.13 -2.38 -0.02 -0.67 16 34 H 0.36 2.02 8.26 -89.70 -0.74 1.28 16 35 H 0.09 0.28 7.80 -2.39 -0.02 0.26 16 36 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.09 7.47 -2.39 -0.02 1.07 16 39 H 0.11 3.73 7.85 -2.40 -0.02 3.72 16 40 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.03 0.93 6.90 -2.39 -0.02 0.91 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -89.81 384.20 1.35 -88.46 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 0.29 Total: 2.80 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.71 Total: -5.49 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -6.43 Total: -94.28 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: 0.92 Total: -26.56 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -89.81 1.35 -88.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725562705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.179 kcal (2) G-P(sol) polarization free energy of solvation -89.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds