Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35367 * 127.25129 * 2 1 4 4 N 1.35032 * 107.23127 * 180.02562 * 3 2 1 5 5 H 0.96998 * 124.88815 * 180.02562 * 4 3 2 6 6 N 1.28477 * 110.22866 * 359.72952 * 4 3 2 7 7 C 1.31805 * 110.07152 * 0.45423 * 6 4 3 8 8 C 1.47706 * 126.51562 * 179.82202 * 7 6 4 9 9 O 1.21577 * 119.99810 * 179.68650 * 8 7 6 10 10 N 1.34772 * 120.00374 * 359.68719 * 8 7 6 11 11 C 1.46506 * 120.00614 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46379 * 324.99979 * 11 10 8 13 13 C 1.53002 * 109.47040 * 84.99628 * 11 10 8 14 14 C 1.52999 * 109.47075 * 205.00168 * 11 10 8 15 15 H 1.08996 * 109.46929 * 299.99044 * 14 11 10 16 16 C 1.52997 * 109.47317 * 59.99940 * 14 11 10 17 17 N 1.46506 * 109.46684 * 179.97438 * 14 11 10 18 18 C 1.34775 * 119.99693 * 155.00124 * 17 14 11 19 19 O 1.21274 * 120.00425 * 359.97438 * 18 17 14 20 20 C 1.50706 * 119.99541 * 179.97438 * 18 17 14 21 21 S 1.80998 * 109.46775 * 179.97438 * 20 18 17 22 22 C 1.76203 * 99.99774 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00146 * 0.02562 * 22 21 20 24 24 C 1.38800 * 119.99753 * 179.97438 * 22 21 20 25 25 N 1.31636 * 119.99994 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00104 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47386 * 89.99859 * 26 24 22 28 28 H 1.48509 * 109.46931 * 209.99633 * 26 24 22 29 29 H 1.48492 * 109.46988 * 329.99419 * 26 24 22 30 30 H 1.09000 * 109.46776 * 269.99953 * 1 2 3 31 31 H 1.09008 * 109.47092 * 29.99236 * 1 2 3 32 32 H 1.08997 * 109.47351 * 149.99874 * 1 2 3 33 33 H 1.08002 * 126.38154 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99625 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.46698 * 60.00424 * 13 11 10 36 36 H 1.09002 * 109.46838 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.47142 * 300.00370 * 13 11 10 38 38 H 1.09002 * 109.47153 * 299.99641 * 16 14 11 39 39 H 1.09001 * 109.46832 * 179.97438 * 16 14 11 40 40 H 1.09004 * 109.47261 * 59.99813 * 16 14 11 41 41 H 0.97000 * 120.00117 * 334.99772 * 17 14 11 42 42 H 1.09002 * 109.46644 * 299.99282 * 20 18 17 43 43 H 1.08999 * 109.46969 * 59.99809 * 20 18 17 44 44 H 0.97001 * 120.00176 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 -0.0006 5 1 4.3888 1.1729 -0.0004 6 7 3.5998 -0.6695 0.0048 7 6 2.3635 -1.1264 -0.0007 8 6 1.9505 -2.5446 -0.0010 9 8 0.7697 -2.8338 -0.0006 10 7 2.8827 -3.5179 -0.0016 11 6 2.4732 -4.9246 -0.0025 12 1 1.5634 -5.0383 0.5870 13 6 2.2098 -5.3782 -1.4398 14 6 3.5859 -5.7800 0.6066 15 1 4.4956 -5.6662 0.0171 16 6 3.8492 -5.3264 2.0439 17 7 3.1760 -7.1866 0.6063 18 6 4.1081 -8.1600 0.6058 19 8 5.2861 -7.8717 0.6051 20 6 3.6865 -9.6069 0.6060 21 16 5.1561 -10.6635 0.6045 22 6 4.3915 -12.2510 0.6058 23 1 3.3146 -12.3317 0.6067 24 6 5.1734 -13.3978 0.6046 25 7 4.6022 -14.5838 0.6061 26 14 7.0361 -13.2582 0.6022 27 1 7.5316 -13.2215 2.0016 28 1 7.6194 -14.4304 -0.0988 29 1 7.4382 -12.0121 -0.0982 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8901 -0.5137 32 1 -0.3634 -0.8899 -0.5138 33 1 2.0220 2.1138 0.0004 34 1 3.8248 -3.2871 -0.0015 35 1 3.1196 -5.2643 -2.0291 36 1 1.9055 -6.4249 -1.4404 37 1 1.4171 -4.7687 -1.8736 38 1 4.1540 -4.2798 2.0445 39 1 4.6416 -5.9362 2.4779 40 1 2.9394 -5.4403 2.6333 41 1 2.2338 -7.4172 0.6065 42 1 3.0921 -9.8119 1.4964 43 1 3.0910 -9.8119 -0.2836 44 1 5.1486 -15.3853 0.6056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725890682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = -8.631692 kcal Electronic energy + Delta-G solvation = -26313.535638 eV Core-core repulsion = 22393.578514 eV Total energy + Delta-G solvation = -3919.957124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.12020 -40.19347 -39.23639 -36.83169 -34.17754 -33.44322 -32.43093 -32.13129 -30.97641 -30.00726 -28.59289 -27.51473 -25.60668 -24.98444 -23.68556 -21.51507 -20.85602 -20.72110 -20.14063 -18.68934 -17.99116 -17.48199 -16.78941 -16.28799 -15.90566 -15.77953 -15.13951 -14.97260 -14.84430 -14.53136 -14.07223 -13.85186 -13.77098 -13.56979 -13.51536 -13.33490 -13.25568 -12.78982 -12.62069 -12.53329 -12.45082 -12.07603 -11.83581 -11.56307 -11.28837 -11.26068 -11.00439 -10.91010 -10.59466 -10.35058 -9.91009 -9.85439 -9.55505 -9.44842 -9.27735 -9.01958 -8.97047 -8.49642 -6.91060 -6.28083 -3.99817 1.15722 1.64778 2.33440 2.61496 2.90575 2.97110 3.07787 3.33096 3.39747 3.50865 3.69393 4.01888 4.27646 4.33726 4.34681 4.73054 4.74019 4.75803 4.87258 4.95391 5.08119 5.10941 5.20656 5.30512 5.35778 5.44536 5.51084 5.55699 5.58334 5.69862 5.74911 5.77400 5.86608 6.02208 6.02815 6.08606 6.12909 6.16812 6.47252 6.53728 7.10379 7.41837 7.58501 7.90282 7.94959 8.42820 8.47502 9.18043 10.81117 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.001851 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.286348 B =15121.562501 C =15613.632271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.145 4.145 3 C -0.021 4.021 4 N -0.380 5.380 5 H 0.448 0.552 6 N -0.256 5.256 7 C -0.014 4.014 8 C 0.608 3.392 9 O -0.527 6.527 10 N -0.708 5.708 11 C 0.137 3.863 12 H 0.096 0.904 13 C -0.164 4.164 14 C 0.138 3.862 15 H 0.093 0.907 16 C -0.164 4.164 17 N -0.728 5.728 18 C 0.535 3.465 19 O -0.518 6.518 20 C -0.124 4.124 21 S -0.142 6.142 22 C -0.521 4.521 23 H 0.088 0.912 24 C 0.095 3.905 25 N -0.880 5.880 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.185 0.815 34 H 0.408 0.592 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.401 0.599 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 34.211 -1.426 34.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.155 4.155 3 C -0.165 4.165 4 N -0.094 5.094 5 H 0.292 0.708 6 N -0.093 5.093 7 C -0.175 4.175 8 C 0.392 3.608 9 O -0.401 6.401 10 N -0.360 5.360 11 C 0.032 3.968 12 H 0.114 0.886 13 C -0.222 4.222 14 C 0.032 3.968 15 H 0.111 0.889 16 C -0.222 4.222 17 N -0.383 5.383 18 C 0.321 3.679 19 O -0.392 6.392 20 C -0.275 4.275 21 S 0.085 5.915 22 C -0.669 4.669 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.517 5.517 26 Si 0.682 3.318 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.159 1.159 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.202 0.798 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.235 0.765 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.358 33.874 -1.428 34.183 hybrid contribution -0.897 0.123 0.057 0.907 sum -5.255 33.997 -1.371 34.428 Atomic orbital electron populations 1.20199 0.87911 1.03210 1.02546 1.20427 0.97711 0.90363 1.06962 1.22738 0.84101 1.00683 1.08963 1.43228 1.08710 1.04375 1.53086 0.70769 1.73531 1.23097 0.93987 1.18710 1.21854 0.89568 0.95066 1.11056 1.16805 0.85378 0.82507 0.76085 1.90789 1.16734 1.82591 1.50002 1.45771 1.10198 1.05382 1.74685 1.21179 0.98206 0.79667 0.97756 0.88578 1.22187 1.02462 1.02113 0.95463 1.21009 0.97588 0.80940 0.97231 0.88865 1.22194 1.02625 1.01407 0.95998 1.45895 1.09991 1.04809 1.77599 1.20265 0.85786 0.86945 0.74948 1.90696 1.17299 1.83540 1.47665 1.23284 1.04839 0.93455 1.05913 1.84778 1.08217 1.01108 1.97432 1.22321 0.96687 0.89135 1.58749 0.89358 1.24716 0.99211 0.94196 0.93206 1.69942 1.36269 0.97382 1.48074 0.86732 0.85151 0.80038 0.79908 1.19233 1.19966 1.15937 0.91320 0.91904 0.89801 0.79809 0.75691 0.92116 0.90945 0.91779 0.91828 0.91369 0.92293 0.76475 0.88421 0.88375 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 9.93 36.00 0.36 -0.22 16 2 C -0.14 -1.16 6.25 -104.40 -0.65 -1.81 16 3 C -0.02 -0.10 11.97 -17.17 -0.21 -0.31 16 4 N -0.38 -1.87 6.83 30.47 0.21 -1.66 16 5 H 0.45 0.51 8.96 -190.44 -1.71 -1.19 16 6 N -0.26 -2.11 11.92 33.42 0.40 -1.71 16 7 C -0.01 -0.14 7.13 -82.77 -0.59 -0.73 16 8 C 0.61 6.62 7.79 -12.39 -0.10 6.53 16 9 O -0.53 -6.93 14.78 5.30 0.08 -6.85 16 10 N -0.71 -6.57 4.38 -54.79 -0.24 -6.81 16 11 C 0.14 1.30 2.21 -67.93 -0.15 1.15 16 12 H 0.10 0.96 7.58 -51.93 -0.39 0.57 16 13 C -0.16 -1.57 9.33 37.16 0.35 -1.22 16 14 C 0.14 1.50 2.21 -67.93 -0.15 1.35 16 15 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 16 C -0.16 -1.74 9.33 37.16 0.35 -1.39 16 17 N -0.73 -8.82 4.38 -53.80 -0.24 -9.06 16 18 C 0.53 9.11 7.81 -10.98 -0.09 9.02 16 19 O -0.52 -10.72 15.52 5.56 0.09 -10.64 16 20 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 21 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 22 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 23 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 24 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 25 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 26 Si 0.86 21.78 27.74 -169.99 -4.72 17.06 16 27 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.08 0.76 6.72 -51.93 -0.35 0.41 16 33 H 0.18 0.20 8.06 -52.49 -0.42 -0.22 16 34 H 0.41 3.37 8.11 -40.82 -0.33 3.04 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.67 7.45 -51.93 -0.39 0.28 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.40 3.84 8.39 -40.82 -0.34 3.50 16 42 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -36.86 386.42 -7.93 -44.79 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.67 Total: 2.13 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.44 Total: -1.74 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.91 Total: -45.02 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.16 Total: -17.49 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.86 -7.93 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725890682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.155 kcal (2) G-P(sol) polarization free energy of solvation -36.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds