Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29435 * 124.80161 * 2 1 4 4 C 1.30944 * 117.36112 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.90196 * 179.97438 * 4 3 2 6 6 C 1.35656 * 114.19341 * 359.97438 * 4 3 2 7 7 C 1.46682 * 126.13194 * 179.97438 * 6 4 3 8 8 O 1.21684 * 119.99860 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00364 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00388 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47333 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47312 * 64.99726 * 11 10 9 13 13 C 1.53005 * 109.47122 * 185.00182 * 11 10 9 14 14 N 1.46901 * 109.47054 * 304.99949 * 11 10 9 15 15 C 1.46896 * 111.00042 * 154.99724 * 14 11 10 16 16 C 1.50704 * 109.47136 * 179.97438 * 15 14 11 17 17 O 1.21294 * 120.00119 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99861 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99894 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00239 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00075 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99962 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99705 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47183 * 90.00347 * 23 21 19 25 25 H 1.48502 * 109.46780 * 210.00041 * 23 21 19 26 26 H 1.48497 * 109.47398 * 329.99869 * 23 21 19 27 27 S 1.70952 * 124.80792 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47524 * 90.02428 * 1 2 3 29 29 H 1.09006 * 109.46982 * 210.02498 * 1 2 3 30 30 H 1.09002 * 109.47083 * 330.02113 * 1 2 3 31 31 H 1.08999 * 109.46928 * 90.02232 * 5 4 3 32 32 H 1.08997 * 109.47041 * 210.02539 * 5 4 3 33 33 H 1.09002 * 109.47117 * 330.02666 * 5 4 3 34 34 H 0.97008 * 119.99740 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.47103 * 300.00280 * 10 9 7 36 36 H 1.09003 * 109.47063 * 59.99821 * 10 9 7 37 37 H 1.08998 * 109.46692 * 299.99919 * 13 11 10 38 38 H 1.08998 * 109.46814 * 59.99996 * 13 11 10 39 39 H 1.09001 * 109.46817 * 179.97438 * 13 11 10 40 40 H 1.00903 * 111.00091 * 31.04354 * 14 11 10 41 41 H 1.08990 * 109.47816 * 300.00435 * 15 14 11 42 42 H 1.09004 * 109.46963 * 60.00424 * 15 14 11 43 43 H 0.97000 * 120.00125 * 0.02562 * 18 16 15 44 44 H 0.96996 * 119.99790 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0419 0.0000 6 6 3.9352 -0.4057 0.0015 7 6 5.3189 -0.8924 0.0018 8 8 6.2425 -0.1002 0.0015 9 7 5.5674 -2.2171 0.0023 10 6 6.9493 -2.7032 0.0031 11 6 6.9518 -4.2332 0.0030 12 1 6.5187 -4.5971 -0.9286 13 6 8.3896 -4.7408 0.1296 14 7 6.1575 -4.7242 1.1370 15 6 5.6381 -6.0723 0.8713 16 6 4.8309 -6.5418 2.0542 17 8 4.7008 -5.8238 3.0231 18 7 4.2536 -7.7595 2.0355 19 6 3.5189 -8.1864 3.1114 20 1 3.4030 -7.5471 3.9741 21 6 2.9242 -9.4421 3.0923 22 7 2.2204 -9.8515 4.1238 23 14 3.1251 -10.5482 1.6005 24 1 4.3319 -11.3963 1.7721 25 1 1.9270 -11.4144 1.4616 26 1 3.2761 -9.7131 0.3819 27 16 2.4828 -1.4036 0.0006 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.7549 2.3193 1.0276 32 1 5.4332 1.7425 -0.5137 33 1 4.0766 2.8948 -0.5141 34 1 4.8310 -2.8486 0.0022 35 1 7.4630 -2.3393 -0.8866 36 1 7.4622 -2.3387 0.8933 37 1 8.9790 -4.3764 -0.7118 38 1 8.8227 -4.3769 1.0613 39 1 8.3913 -5.8308 0.1299 40 1 5.4086 -4.0851 1.3576 41 1 5.0045 -6.0495 -0.0153 42 1 6.4704 -6.7563 0.7054 43 1 4.3580 -8.3339 1.2608 44 1 1.8049 -10.7278 4.1103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731635847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = -24.414025 kcal Electronic energy + Delta-G solvation = -26651.764383 eV Core-core repulsion = 22731.122885 eV Total energy + Delta-G solvation = -3920.641497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65946 -39.55281 -38.60195 -37.12192 -34.29725 -33.87324 -33.28822 -31.75200 -31.14856 -29.56133 -28.87408 -26.86544 -25.99164 -23.83488 -23.24271 -21.96972 -20.84246 -19.84081 -19.41334 -18.43513 -18.25545 -17.28730 -16.34145 -16.15074 -15.90320 -15.50892 -15.44342 -14.91133 -14.77822 -14.52710 -14.27884 -13.90725 -13.69617 -13.54215 -13.25671 -12.99743 -12.79315 -12.73531 -12.70590 -12.57156 -12.31256 -12.24648 -12.09224 -11.89310 -11.65444 -11.57260 -11.24348 -11.00721 -10.64322 -10.35483 -10.02269 -9.96845 -9.81133 -9.62522 -9.40036 -8.97320 -8.66576 -8.30914 -8.22646 -6.35767 -3.87469 -0.05085 0.87613 1.28066 2.14705 2.78632 2.91785 2.97416 3.02745 3.11127 3.66550 3.67495 3.92689 4.05731 4.44514 4.55111 4.58216 4.69846 4.82247 5.00029 5.01335 5.04232 5.11975 5.16668 5.39702 5.39929 5.47967 5.48694 5.57879 5.60896 5.62084 5.65708 5.75508 5.84415 5.85829 5.98336 6.13236 6.23093 6.95526 7.05210 7.34389 7.39260 7.52824 7.83807 8.09235 8.54364 8.89979 9.37117 9.76668 10.77282 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.002876 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.540879 B = 9734.060566 C =11683.810463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.067 3.933 3 N -0.481 5.481 4 C 0.154 3.846 5 C -0.090 4.090 6 C -0.309 4.309 7 C 0.603 3.397 8 O -0.522 6.522 9 N -0.727 5.727 10 C 0.119 3.881 11 C 0.070 3.930 12 H 0.050 0.950 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.046 3.954 16 C 0.448 3.552 17 O -0.563 6.563 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 S 0.170 5.830 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.396 0.604 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.348 0.652 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.370 0.630 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 16.239 -15.386 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.208 4.208 3 N -0.197 5.197 4 C 0.016 3.984 5 C -0.148 4.148 6 C -0.433 4.433 7 C 0.389 3.611 8 O -0.401 6.401 9 N -0.379 5.379 10 C -0.004 4.004 11 C -0.040 4.040 12 H 0.068 0.932 13 C -0.196 4.196 14 N -0.299 5.299 15 C -0.087 4.087 16 C 0.233 3.767 17 O -0.445 6.445 18 N -0.228 5.228 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 S 0.427 5.573 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.232 0.768 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.169 0.831 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.770 16.268 -14.263 21.812 hybrid contribution -0.583 -0.691 -1.675 1.903 sum 2.187 15.577 -15.938 22.393 Atomic orbital electron populations 1.20579 0.84465 1.04976 1.04366 1.27437 1.02251 0.91097 0.99987 1.66123 1.04386 1.31234 1.17961 1.20677 0.89934 0.93625 0.94195 1.20672 0.96845 0.93477 1.03848 1.25406 0.97929 0.97406 1.22582 1.16579 0.86080 0.82234 0.76183 1.90782 1.44381 1.54734 1.50174 1.45940 1.09648 1.06497 1.75824 1.21677 0.81899 0.93280 1.03543 1.21840 0.96724 0.92549 0.92879 0.93239 1.21735 0.93882 1.01696 1.02288 1.60117 1.28942 1.03134 1.37704 1.21808 0.98594 0.91880 0.96434 1.19673 0.84442 0.83256 0.89293 1.90580 1.63474 1.55156 1.35278 1.42201 1.47551 1.15210 1.17885 1.19431 1.26047 1.01372 0.96595 0.86260 1.25043 0.96768 0.96971 0.97335 1.69619 1.32817 1.20227 1.29333 0.86673 0.78943 0.81366 0.82390 1.19575 1.20172 1.19547 1.84142 0.96297 1.11016 1.65845 0.88996 0.89364 0.88750 0.89955 0.88185 0.90761 0.76847 0.90349 0.89795 0.92348 0.91327 0.91940 0.83117 0.93720 0.89142 0.79698 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.00 0.38 -0.15 16 2 C 0.07 0.68 7.39 -13.29 -0.10 0.58 16 3 N -0.48 -5.77 10.50 -7.70 -0.08 -5.85 16 4 C 0.15 1.90 6.79 -83.89 -0.57 1.33 16 5 C -0.09 -0.95 9.70 36.01 0.35 -0.60 16 6 C -0.31 -3.80 6.48 -37.10 -0.24 -4.04 16 7 C 0.60 7.85 7.78 -12.85 -0.10 7.75 16 8 O -0.52 -7.78 14.27 5.20 0.07 -7.70 16 9 N -0.73 -8.27 4.98 -61.62 -0.31 -8.58 16 10 C 0.12 1.27 5.31 -4.04 -0.02 1.25 16 11 C 0.07 0.75 2.81 -67.71 -0.19 0.56 16 12 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 13 C -0.14 -1.33 9.42 37.16 0.35 -0.98 16 14 N -0.66 -9.58 5.93 -107.99 -0.64 -10.22 16 15 C 0.05 0.70 5.96 -4.98 -0.03 0.67 16 16 C 0.45 9.75 7.82 -10.98 -0.09 9.66 16 17 O -0.56 -14.69 15.78 5.55 0.09 -14.60 16 18 N -0.59 -13.53 5.09 -10.96 -0.06 -13.58 16 19 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.27 13.96 55.50 0.77 -24.50 16 23 Si 0.88 18.83 27.74 -169.99 -4.71 14.11 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 27 S 0.17 1.73 22.31 -107.50 -2.40 -0.67 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.14 6.01 -51.93 -0.31 0.83 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 4.25 6.55 -40.82 -0.27 3.98 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 40 H 0.35 5.29 6.41 -39.29 -0.25 5.04 16 41 H 0.04 0.58 8.05 -51.93 -0.42 0.16 16 42 H 0.09 1.24 7.44 -51.93 -0.39 0.86 16 43 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -34.29 381.30 -8.05 -42.33 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -6.02 Total: 15.06 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.51 Total: 8.45 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.31 Total: -62.73 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.11 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.40 Total: -0.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.29 -8.05 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731635847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.919 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds