Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29435 * 124.80161 * 2 1 4 4 C 1.30944 * 117.36112 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.90196 * 179.97438 * 4 3 2 6 6 C 1.35656 * 114.19341 * 359.97438 * 4 3 2 7 7 C 1.46682 * 126.13194 * 179.97438 * 6 4 3 8 8 O 1.21684 * 119.99860 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00364 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00388 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47333 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47312 * 64.99726 * 11 10 9 13 13 C 1.53005 * 109.47122 * 185.00182 * 11 10 9 14 14 N 1.46901 * 109.47054 * 304.99949 * 11 10 9 15 15 C 1.46896 * 111.00042 * 154.99724 * 14 11 10 16 16 C 1.50704 * 109.47136 * 179.97438 * 15 14 11 17 17 O 1.21294 * 120.00119 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99861 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99894 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00239 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00075 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99962 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99705 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47183 * 90.00347 * 23 21 19 25 25 H 1.48502 * 109.46780 * 210.00041 * 23 21 19 26 26 H 1.48497 * 109.47398 * 329.99869 * 23 21 19 27 27 S 1.70952 * 124.80792 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47524 * 90.02428 * 1 2 3 29 29 H 1.09006 * 109.46982 * 210.02498 * 1 2 3 30 30 H 1.09002 * 109.47083 * 330.02113 * 1 2 3 31 31 H 1.08999 * 109.46928 * 90.02232 * 5 4 3 32 32 H 1.08997 * 109.47041 * 210.02539 * 5 4 3 33 33 H 1.09002 * 109.47117 * 330.02666 * 5 4 3 34 34 H 0.97008 * 119.99740 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.47103 * 300.00280 * 10 9 7 36 36 H 1.09003 * 109.47063 * 59.99821 * 10 9 7 37 37 H 1.08998 * 109.46692 * 299.99919 * 13 11 10 38 38 H 1.08998 * 109.46814 * 59.99996 * 13 11 10 39 39 H 1.09001 * 109.46817 * 179.97438 * 13 11 10 40 40 H 1.00903 * 111.00091 * 31.04354 * 14 11 10 41 41 H 1.08990 * 109.47816 * 300.00435 * 15 14 11 42 42 H 1.09004 * 109.46963 * 60.00424 * 15 14 11 43 43 H 0.97000 * 120.00125 * 0.02562 * 18 16 15 44 44 H 0.96996 * 119.99790 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0419 0.0000 6 6 3.9352 -0.4057 0.0015 7 6 5.3189 -0.8924 0.0018 8 8 6.2425 -0.1002 0.0015 9 7 5.5674 -2.2171 0.0023 10 6 6.9493 -2.7032 0.0031 11 6 6.9518 -4.2332 0.0030 12 1 6.5187 -4.5971 -0.9286 13 6 8.3896 -4.7408 0.1296 14 7 6.1575 -4.7242 1.1370 15 6 5.6381 -6.0723 0.8713 16 6 4.8309 -6.5418 2.0542 17 8 4.7008 -5.8238 3.0231 18 7 4.2536 -7.7595 2.0355 19 6 3.5189 -8.1864 3.1114 20 1 3.4030 -7.5471 3.9741 21 6 2.9242 -9.4421 3.0923 22 7 2.2204 -9.8515 4.1238 23 14 3.1251 -10.5482 1.6005 24 1 4.3319 -11.3963 1.7721 25 1 1.9270 -11.4144 1.4616 26 1 3.2761 -9.7131 0.3819 27 16 2.4828 -1.4036 0.0006 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.7549 2.3193 1.0276 32 1 5.4332 1.7425 -0.5137 33 1 4.0766 2.8948 -0.5141 34 1 4.8310 -2.8486 0.0022 35 1 7.4630 -2.3393 -0.8866 36 1 7.4622 -2.3387 0.8933 37 1 8.9790 -4.3764 -0.7118 38 1 8.8227 -4.3769 1.0613 39 1 8.3913 -5.8308 0.1299 40 1 5.4086 -4.0851 1.3576 41 1 5.0045 -6.0495 -0.0153 42 1 6.4704 -6.7563 0.7054 43 1 4.3580 -8.3339 1.2608 44 1 1.8049 -10.7278 4.1103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731635847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = -52.490496 kcal Electronic energy + Delta-G solvation = -26652.981870 eV Core-core repulsion = 22731.122885 eV Total energy + Delta-G solvation = -3921.858984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55904 -40.56951 -40.17115 -38.24617 -36.02302 -35.12789 -34.05809 -33.74120 -32.22521 -30.25461 -29.73931 -28.27418 -27.01636 -25.48284 -23.99672 -22.87756 -21.75381 -21.31276 -20.71213 -20.23208 -19.10041 -18.32537 -17.62791 -17.11715 -16.95957 -16.90354 -16.63143 -16.31493 -15.77758 -15.55456 -15.44691 -15.11778 -14.90946 -14.49327 -14.43947 -14.26347 -14.17448 -13.67692 -13.63196 -13.44716 -13.34422 -13.31084 -13.01725 -12.96446 -12.81736 -12.57377 -12.42492 -12.39855 -11.96509 -11.89061 -11.50327 -11.30514 -10.84360 -10.69358 -10.43378 -10.30934 -10.23859 -9.79903 -9.40596 -8.40093 -6.01132 -0.90095 0.06232 0.44079 1.25806 1.31173 1.37318 1.45966 1.87612 1.96450 1.97803 2.24350 2.67926 2.93294 3.16399 3.32842 3.57361 3.70214 3.83382 3.98161 4.09650 4.17636 4.32867 4.41170 4.48263 4.55703 4.59045 4.60161 4.63323 4.67228 4.78039 4.85080 4.94206 5.04310 5.05247 5.12753 5.29159 5.45679 5.53906 5.89664 6.02254 6.13639 6.27243 6.49667 6.60543 6.88644 6.89414 7.40845 7.97525 8.77578 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.002876 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.540879 B = 9734.060566 C =11683.810463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.071 3.929 3 N -0.503 5.503 4 C 0.144 3.856 5 C -0.086 4.086 6 C -0.334 4.334 7 C 0.600 3.400 8 O -0.549 6.549 9 N -0.720 5.720 10 C 0.122 3.878 11 C 0.077 3.923 12 H 0.075 0.925 13 C -0.137 4.137 14 N -0.685 5.685 15 C 0.059 3.941 16 C 0.447 3.553 17 O -0.614 6.614 18 N -0.589 5.589 19 C -0.328 4.328 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.259 1.259 25 H -0.277 1.277 26 H -0.227 1.227 27 S 0.187 5.813 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.400 0.600 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.340 0.660 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.390 0.610 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 15.236 -19.109 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.203 4.203 3 N -0.219 5.219 4 C 0.005 3.995 5 C -0.145 4.145 6 C -0.458 4.458 7 C 0.387 3.613 8 O -0.429 6.429 9 N -0.372 5.372 10 C -0.001 4.001 11 C -0.032 4.032 12 H 0.093 0.907 13 C -0.195 4.195 14 N -0.320 5.320 15 C -0.073 4.073 16 C 0.235 3.765 17 O -0.499 6.499 18 N -0.231 5.231 19 C -0.457 4.457 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.184 1.184 25 H -0.202 1.202 26 H -0.150 1.150 27 S 0.444 5.556 28 H 0.131 0.869 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.160 0.840 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.226 0.774 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.093 15.260 -18.015 23.811 hybrid contribution -0.718 -0.271 -0.398 0.865 sum 2.375 14.989 -18.413 23.861 Atomic orbital electron populations 1.20806 0.81849 1.05944 1.05959 1.28133 1.03726 0.90566 0.97900 1.66188 1.04322 1.32059 1.19354 1.20961 0.90500 0.94113 0.93905 1.20642 0.96325 0.93602 1.03892 1.25424 0.98377 0.98015 1.23995 1.16735 0.86215 0.82519 0.75848 1.90759 1.45199 1.55384 1.51578 1.45914 1.10168 1.06061 1.75098 1.21708 0.81452 0.93499 1.03480 1.21909 0.96760 0.92084 0.92438 0.90728 1.21752 0.93337 1.01761 1.02628 1.60125 1.29002 1.02746 1.40143 1.21751 0.98975 0.92660 0.93915 1.20978 0.83111 0.82029 0.90359 1.90563 1.64859 1.56459 1.37975 1.42012 1.47559 1.16183 1.17333 1.18993 1.28413 1.01524 0.96771 0.92759 1.26122 0.95409 0.98322 1.01521 1.69807 1.34116 1.21165 1.32507 0.85370 0.79060 0.78707 0.78407 1.18373 1.20183 1.15039 1.84000 0.95259 1.10663 1.65642 0.86898 0.87966 0.88132 0.89907 0.89106 0.89454 0.76380 0.88789 0.91496 0.89861 0.92884 0.91734 0.84013 0.89901 0.86447 0.77415 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.46 71.24 0.75 -0.16 16 2 C 0.07 1.35 7.39 88.46 0.65 2.00 16 3 N -0.50 -11.77 10.50 -178.28 -1.87 -13.64 16 4 C 0.14 3.55 6.79 42.09 0.29 3.84 16 5 C -0.09 -1.85 9.70 71.24 0.69 -1.16 16 6 C -0.33 -8.18 6.48 23.88 0.15 -8.03 16 7 C 0.60 15.60 7.78 86.45 0.67 16.28 16 8 O -0.55 -16.57 14.27 -4.30 -0.06 -16.63 16 9 N -0.72 -15.74 4.98 -467.10 -2.33 -18.07 16 10 C 0.12 2.40 5.31 86.38 0.46 2.86 16 11 C 0.08 1.41 2.81 44.92 0.13 1.54 16 12 H 0.07 1.06 7.80 -2.39 -0.02 1.04 16 13 C -0.14 -2.22 9.42 71.98 0.68 -1.55 16 14 N -0.68 -18.42 5.93 -495.59 -2.94 -21.35 16 15 C 0.06 1.62 5.96 85.56 0.51 2.13 16 16 C 0.45 19.15 7.82 87.66 0.69 19.84 16 17 O -0.61 -33.04 15.78 -3.07 -0.05 -33.08 16 18 N -0.59 -26.48 5.09 -306.98 -1.56 -28.04 16 19 C -0.33 -18.70 10.16 84.04 0.85 -17.85 16 20 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 21 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.94 -55.50 13.96 21.66 0.30 -55.19 16 23 Si 0.96 37.31 27.74 68.60 1.90 39.22 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 25 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.23 -7.17 6.52 99.48 0.65 -6.52 16 27 S 0.19 3.65 22.31 -56.49 -1.26 2.39 16 28 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.13 6.01 -2.39 -0.01 2.11 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.40 8.06 6.55 -92.70 -0.61 7.45 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 40 H 0.34 10.02 6.41 -89.69 -0.58 9.45 16 41 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 42 H 0.12 2.67 7.44 -2.39 -0.02 2.65 16 43 H 0.39 14.26 5.76 -92.71 -0.53 13.73 16 44 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -80.76 381.30 -1.59 -82.35 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -0.71 Total: 42.68 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 6.98 Total: 19.37 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -8.40 Total: -136.30 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.11 Total: -49.71 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 1.90 Total: 39.22 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.26 Total: 2.39 kcal Total: -80.76 -1.59 -82.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731635847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.858 kcal (2) G-P(sol) polarization free energy of solvation -80.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds