Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29430 * 124.79996 * 2 1 4 4 C 1.30949 * 117.36120 * 179.97438 * 3 2 1 5 5 C 1.50694 * 122.90678 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.18886 * 0.02562 * 4 3 2 7 7 C 1.46686 * 126.12854 * 180.02562 * 6 4 3 8 8 O 1.21689 * 119.99969 * 359.97438 * 7 6 4 9 9 N 1.34773 * 119.99873 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47237 * 179.72043 * 10 9 7 12 12 H 1.08994 * 109.46986 * 295.00085 * 11 10 9 13 13 C 1.52999 * 109.47057 * 174.99470 * 11 10 9 14 14 N 1.46900 * 109.46816 * 54.99895 * 11 10 9 15 15 C 1.46898 * 111.00006 * 204.99582 * 14 11 10 16 16 C 1.50699 * 109.47550 * 179.97438 * 15 14 11 17 17 O 1.21289 * 119.99759 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00104 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99915 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99828 * 0.02562 * 19 18 16 21 21 C 1.38940 * 120.00027 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00065 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00029 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47226 * 89.99702 * 23 21 19 25 25 H 1.48501 * 109.47121 * 209.99778 * 23 21 19 26 26 H 1.48495 * 109.47166 * 329.99637 * 23 21 19 27 27 S 1.70949 * 124.80500 * 180.28157 * 2 1 3 28 28 H 1.08992 * 109.47378 * 90.01904 * 1 2 3 29 29 H 1.08999 * 109.46685 * 210.02007 * 1 2 3 30 30 H 1.09000 * 109.47209 * 330.01543 * 1 2 3 31 31 H 1.08998 * 109.46927 * 270.00579 * 5 4 3 32 32 H 1.09004 * 109.46778 * 29.99934 * 5 4 3 33 33 H 1.08995 * 109.47584 * 149.99891 * 5 4 3 34 34 H 0.97005 * 120.00161 * 359.71991 * 9 7 6 35 35 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 36 36 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 37 37 H 1.08998 * 109.47635 * 300.00656 * 13 11 10 38 38 H 1.09004 * 109.46798 * 60.00491 * 13 11 10 39 39 H 1.08995 * 109.47105 * 179.97438 * 13 11 10 40 40 H 1.00901 * 111.00582 * 328.95003 * 14 11 10 41 41 H 1.09001 * 109.47587 * 300.00292 * 15 14 11 42 42 H 1.09006 * 109.47190 * 59.99997 * 15 14 11 43 43 H 0.96993 * 120.00019 * 359.97438 * 18 16 15 44 44 H 0.97007 * 120.00020 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5442 0.8933 0.0005 5 6 4.5198 2.0418 0.0012 6 6 3.9352 -0.4058 0.0004 7 6 5.3189 -0.8925 0.0015 8 8 6.2426 -0.1002 0.0020 9 7 5.5673 -2.2172 0.0007 10 6 6.9493 -2.7033 0.0023 11 6 6.9518 -4.2333 0.0081 12 1 6.5183 -4.5937 0.9409 13 6 8.3896 -4.7414 -0.1161 14 7 6.1580 -4.7284 -1.1244 15 6 5.6384 -6.0756 -0.8541 16 6 4.8307 -6.5490 -2.0350 17 8 4.7010 -5.8345 -3.0065 18 7 4.2524 -7.7662 -2.0115 19 6 3.5181 -8.1970 -3.0861 20 1 3.4033 -7.5611 -3.9515 21 6 2.9224 -9.4520 -3.0622 22 7 2.2188 -9.8651 -4.0924 23 14 3.1215 -10.5521 -1.5657 24 1 2.0208 -10.2853 -0.6052 25 1 3.0761 -11.9751 -1.9878 26 1 4.4259 -10.2704 -0.9143 27 16 2.4828 -1.4036 -0.0069 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8901 0.5136 31 1 4.7553 2.3189 -1.0264 32 1 4.0764 2.8948 0.5150 33 1 5.4330 1.7425 0.5153 34 1 4.8310 -2.8487 0.0036 35 1 7.4624 -2.3424 -0.8891 36 1 7.4628 -2.3357 0.8908 37 1 8.8232 -4.3808 -1.0488 38 1 8.9786 -4.3739 0.7243 39 1 8.3914 -5.8313 -0.1115 40 1 5.4091 -4.0902 -1.3477 41 1 6.4707 -6.7590 -0.6853 42 1 5.0044 -6.0495 0.0323 43 1 4.3565 -8.3377 -1.2348 44 1 1.8026 -10.7412 -4.0756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731635856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = -24.417963 kcal Electronic energy + Delta-G solvation = -26651.017087 eV Core-core repulsion = 22730.375419 eV Total energy + Delta-G solvation = -3920.641668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65863 -39.55231 -38.60276 -37.12201 -34.29748 -33.87398 -33.28847 -31.75112 -31.14852 -29.56194 -28.87375 -26.86559 -25.99137 -23.83502 -23.24275 -21.96981 -20.84271 -19.84149 -19.41363 -18.43471 -18.25507 -17.28706 -16.34121 -16.15012 -15.90476 -15.51083 -15.44189 -14.90729 -14.77943 -14.52427 -14.27822 -13.91442 -13.69434 -13.54410 -13.24263 -13.00138 -12.79765 -12.74036 -12.71273 -12.57361 -12.31077 -12.24634 -12.07977 -11.90172 -11.64663 -11.57127 -11.24939 -11.00728 -10.64212 -10.35598 -10.02236 -9.96734 -9.81088 -9.62572 -9.40029 -8.97254 -8.66556 -8.31127 -8.22495 -6.35720 -3.87495 -0.05001 0.87603 1.28097 2.14762 2.78693 2.91687 2.98289 3.01949 3.11162 3.66619 3.67453 3.92453 4.05730 4.44516 4.55016 4.58223 4.69846 4.82193 4.99271 5.00765 5.06105 5.12106 5.16240 5.39618 5.39770 5.48024 5.48430 5.57784 5.61009 5.62043 5.65685 5.75838 5.84453 5.85776 5.98303 6.13242 6.23074 6.95507 7.05238 7.34396 7.39358 7.52849 7.83809 8.09178 8.54362 8.89956 9.37107 9.76621 10.77293 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.002876 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.538178 B = 9733.442455 C =11684.660950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.067 3.933 3 N -0.481 5.481 4 C 0.154 3.846 5 C -0.090 4.090 6 C -0.309 4.309 7 C 0.603 3.397 8 O -0.523 6.523 9 N -0.726 5.726 10 C 0.119 3.881 11 C 0.070 3.930 12 H 0.050 0.950 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.046 3.954 16 C 0.448 3.552 17 O -0.563 6.563 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 S 0.170 5.830 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.396 0.604 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.348 0.652 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.370 0.630 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 16.310 15.312 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.208 4.208 3 N -0.197 5.197 4 C 0.016 3.984 5 C -0.148 4.148 6 C -0.433 4.433 7 C 0.389 3.611 8 O -0.401 6.401 9 N -0.379 5.379 10 C -0.004 4.004 11 C -0.040 4.040 12 H 0.068 0.932 13 C -0.196 4.196 14 N -0.299 5.299 15 C -0.087 4.087 16 C 0.233 3.767 17 O -0.445 6.445 18 N -0.229 5.229 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 S 0.427 5.573 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.232 0.768 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.169 0.831 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.748 16.335 14.179 21.804 hybrid contribution -0.559 -0.699 1.655 1.882 sum 2.189 15.636 15.834 22.360 Atomic orbital electron populations 1.20575 0.84464 1.04701 1.04622 1.27438 1.02253 0.91108 0.99979 1.66122 1.04387 1.31230 1.17973 1.20679 0.89933 0.93624 0.94193 1.20670 0.96849 0.93482 1.03843 1.25409 0.97932 0.97408 1.22585 1.16581 0.86080 0.82233 0.76182 1.90783 1.44380 1.54734 1.50181 1.45940 1.09648 1.06495 1.75822 1.21679 0.81899 0.93273 1.03550 1.21838 0.96723 0.92525 0.92896 0.93237 1.21734 0.93887 1.01689 1.02294 1.60114 1.28972 1.03151 1.37667 1.21810 0.98593 0.91886 0.96423 1.19672 0.84386 0.83299 0.89304 1.90579 1.63444 1.55403 1.35058 1.42204 1.47517 1.15240 1.17895 1.19429 1.25750 1.01506 0.96746 0.86262 1.25041 0.96792 0.96943 0.97339 1.69623 1.32802 1.20254 1.29326 0.86675 0.78591 0.81302 0.82838 1.19651 1.20141 1.19473 1.84142 0.96290 1.11004 1.65844 0.88788 0.89519 0.88820 0.89961 0.90760 0.88181 0.76846 0.89798 0.90345 0.91324 0.92353 0.91947 0.83110 0.89143 0.93721 0.79698 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.01 0.38 -0.15 16 2 C 0.07 0.67 7.39 -13.29 -0.10 0.58 16 3 N -0.48 -5.76 10.50 -7.70 -0.08 -5.84 16 4 C 0.15 1.90 6.79 -83.89 -0.57 1.33 16 5 C -0.09 -0.95 9.70 36.00 0.35 -0.60 16 6 C -0.31 -3.79 6.48 -37.09 -0.24 -4.03 16 7 C 0.60 7.84 7.78 -12.85 -0.10 7.74 16 8 O -0.52 -7.77 14.27 5.20 0.07 -7.70 16 9 N -0.73 -8.26 4.98 -61.62 -0.31 -8.57 16 10 C 0.12 1.27 5.31 -4.04 -0.02 1.25 16 11 C 0.07 0.75 2.81 -67.71 -0.19 0.56 16 12 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 13 C -0.14 -1.33 9.41 37.16 0.35 -0.98 16 14 N -0.66 -9.58 5.93 -107.99 -0.64 -10.22 16 15 C 0.05 0.70 5.96 -4.98 -0.03 0.67 16 16 C 0.45 9.75 7.82 -10.98 -0.09 9.66 16 17 O -0.56 -14.69 15.78 5.55 0.09 -14.60 16 18 N -0.59 -13.53 5.09 -10.96 -0.06 -13.58 16 19 C -0.31 -8.44 10.16 -14.94 -0.15 -8.59 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.28 13.96 55.50 0.77 -24.50 16 23 Si 0.88 18.82 27.74 -169.99 -4.71 14.10 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 27 S 0.17 1.73 22.31 -107.50 -2.40 -0.67 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.14 6.01 -51.93 -0.31 0.83 16 34 H 0.40 4.23 6.56 -40.82 -0.27 3.97 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 40 H 0.35 5.29 6.41 -39.29 -0.25 5.03 16 41 H 0.09 1.25 7.44 -51.93 -0.39 0.87 16 42 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 43 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -34.29 381.30 -8.05 -42.34 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -6.02 Total: 15.04 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.51 Total: 8.45 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.31 Total: -62.71 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.16 Total: -22.30 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.10 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.40 Total: -0.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.29 -8.05 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731635856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.920 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds