Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29430 * 124.79996 * 2 1 4 4 C 1.30949 * 117.36120 * 179.97438 * 3 2 1 5 5 C 1.50694 * 122.90678 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.18886 * 0.02562 * 4 3 2 7 7 C 1.46686 * 126.12854 * 180.02562 * 6 4 3 8 8 O 1.21689 * 119.99969 * 359.97438 * 7 6 4 9 9 N 1.34773 * 119.99873 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47237 * 179.72043 * 10 9 7 12 12 H 1.08994 * 109.46986 * 295.00085 * 11 10 9 13 13 C 1.52999 * 109.47057 * 174.99470 * 11 10 9 14 14 N 1.46900 * 109.46816 * 54.99895 * 11 10 9 15 15 C 1.46898 * 111.00006 * 204.99582 * 14 11 10 16 16 C 1.50699 * 109.47550 * 179.97438 * 15 14 11 17 17 O 1.21289 * 119.99759 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00104 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99915 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99828 * 0.02562 * 19 18 16 21 21 C 1.38940 * 120.00027 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00065 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00029 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47226 * 89.99702 * 23 21 19 25 25 H 1.48501 * 109.47121 * 209.99778 * 23 21 19 26 26 H 1.48495 * 109.47166 * 329.99637 * 23 21 19 27 27 S 1.70949 * 124.80500 * 180.28157 * 2 1 3 28 28 H 1.08992 * 109.47378 * 90.01904 * 1 2 3 29 29 H 1.08999 * 109.46685 * 210.02007 * 1 2 3 30 30 H 1.09000 * 109.47209 * 330.01543 * 1 2 3 31 31 H 1.08998 * 109.46927 * 270.00579 * 5 4 3 32 32 H 1.09004 * 109.46778 * 29.99934 * 5 4 3 33 33 H 1.08995 * 109.47584 * 149.99891 * 5 4 3 34 34 H 0.97005 * 120.00161 * 359.71991 * 9 7 6 35 35 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 36 36 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 37 37 H 1.08998 * 109.47635 * 300.00656 * 13 11 10 38 38 H 1.09004 * 109.46798 * 60.00491 * 13 11 10 39 39 H 1.08995 * 109.47105 * 179.97438 * 13 11 10 40 40 H 1.00901 * 111.00582 * 328.95003 * 14 11 10 41 41 H 1.09001 * 109.47587 * 300.00292 * 15 14 11 42 42 H 1.09006 * 109.47190 * 59.99997 * 15 14 11 43 43 H 0.96993 * 120.00019 * 359.97438 * 18 16 15 44 44 H 0.97007 * 120.00020 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5442 0.8933 0.0005 5 6 4.5198 2.0418 0.0012 6 6 3.9352 -0.4058 0.0004 7 6 5.3189 -0.8925 0.0015 8 8 6.2426 -0.1002 0.0020 9 7 5.5673 -2.2172 0.0007 10 6 6.9493 -2.7033 0.0023 11 6 6.9518 -4.2333 0.0081 12 1 6.5183 -4.5937 0.9409 13 6 8.3896 -4.7414 -0.1161 14 7 6.1580 -4.7284 -1.1244 15 6 5.6384 -6.0756 -0.8541 16 6 4.8307 -6.5490 -2.0350 17 8 4.7010 -5.8345 -3.0065 18 7 4.2524 -7.7662 -2.0115 19 6 3.5181 -8.1970 -3.0861 20 1 3.4033 -7.5611 -3.9515 21 6 2.9224 -9.4520 -3.0622 22 7 2.2188 -9.8651 -4.0924 23 14 3.1215 -10.5521 -1.5657 24 1 2.0208 -10.2853 -0.6052 25 1 3.0761 -11.9751 -1.9878 26 1 4.4259 -10.2704 -0.9143 27 16 2.4828 -1.4036 -0.0069 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8901 0.5136 31 1 4.7553 2.3189 -1.0264 32 1 4.0764 2.8948 0.5150 33 1 5.4330 1.7425 0.5153 34 1 4.8310 -2.8487 0.0036 35 1 7.4624 -2.3424 -0.8891 36 1 7.4628 -2.3357 0.8908 37 1 8.8232 -4.3808 -1.0488 38 1 8.9786 -4.3739 0.7243 39 1 8.3914 -5.8313 -0.1115 40 1 5.4091 -4.0902 -1.3477 41 1 6.4707 -6.7590 -0.6853 42 1 5.0044 -6.0495 0.0323 43 1 4.3565 -8.3377 -1.2348 44 1 1.8026 -10.7412 -4.0756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731635856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = -52.489721 kcal Electronic energy + Delta-G solvation = -26652.234370 eV Core-core repulsion = 22730.375419 eV Total energy + Delta-G solvation = -3921.858951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55778 -40.56927 -40.17107 -38.24594 -36.02354 -35.12747 -34.05767 -33.73988 -32.22549 -30.25461 -29.73892 -28.27436 -27.01637 -25.48271 -23.99639 -22.87730 -21.75387 -21.31280 -20.71214 -20.23136 -19.09982 -18.32461 -17.62777 -17.11605 -16.96276 -16.90439 -16.62900 -16.30952 -15.78238 -15.54991 -15.45287 -15.11670 -14.89561 -14.49321 -14.44903 -14.26609 -14.18125 -13.68016 -13.63263 -13.44589 -13.33486 -13.29757 -13.02109 -12.96624 -12.81482 -12.57431 -12.42698 -12.39875 -11.97500 -11.88900 -11.49913 -11.30529 -10.84225 -10.69326 -10.43270 -10.30863 -10.23915 -9.79941 -9.40509 -8.40036 -6.01140 -0.90038 0.06278 0.44139 1.25852 1.31807 1.36759 1.46147 1.87830 1.96532 1.97669 2.24357 2.67673 2.93358 3.16687 3.32693 3.57421 3.70227 3.83427 3.98196 4.09633 4.17671 4.32877 4.41164 4.48597 4.55659 4.58969 4.59844 4.63316 4.67388 4.78096 4.85161 4.94029 5.04272 5.05171 5.12727 5.29205 5.45524 5.53923 5.89651 6.02235 6.13753 6.27407 6.49713 6.60573 6.88710 6.89419 7.40857 7.97498 8.77604 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.002876 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.538178 B = 9733.442455 C =11684.660950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.071 3.929 3 N -0.503 5.503 4 C 0.144 3.856 5 C -0.086 4.086 6 C -0.334 4.334 7 C 0.600 3.400 8 O -0.549 6.549 9 N -0.720 5.720 10 C 0.122 3.878 11 C 0.077 3.923 12 H 0.075 0.925 13 C -0.137 4.137 14 N -0.685 5.685 15 C 0.059 3.941 16 C 0.447 3.553 17 O -0.614 6.614 18 N -0.589 5.589 19 C -0.328 4.328 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.255 1.255 25 H -0.278 1.278 26 H -0.230 1.230 27 S 0.187 5.813 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.340 0.660 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.390 0.610 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 15.276 18.969 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.203 4.203 3 N -0.219 5.219 4 C 0.005 3.995 5 C -0.145 4.145 6 C -0.458 4.458 7 C 0.387 3.613 8 O -0.429 6.429 9 N -0.372 5.372 10 C -0.001 4.001 11 C -0.032 4.032 12 H 0.093 0.907 13 C -0.195 4.195 14 N -0.320 5.320 15 C -0.073 4.073 16 C 0.235 3.765 17 O -0.498 6.498 18 N -0.231 5.231 19 C -0.457 4.457 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.153 1.153 27 S 0.445 5.555 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.160 0.840 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.226 0.774 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.133 15.295 17.864 23.725 hybrid contribution -0.719 -0.267 0.400 0.865 sum 2.414 15.028 18.263 23.774 Atomic orbital electron populations 1.20805 0.81854 1.06199 1.05702 1.28131 1.03725 0.90573 0.97912 1.66187 1.04325 1.32062 1.19344 1.20962 0.90499 0.94114 0.93912 1.20641 0.96328 0.93607 1.03889 1.25428 0.98378 0.98014 1.23980 1.16737 0.86214 0.82518 0.75848 1.90760 1.45198 1.55383 1.51585 1.45913 1.10168 1.06060 1.75095 1.21709 0.81453 0.93492 1.03481 1.21906 0.96752 0.92055 0.92470 0.90715 1.21750 0.93356 1.01743 1.02631 1.60121 1.29038 1.02769 1.40101 1.21751 0.98954 0.92641 0.93955 1.20977 0.83071 0.82062 0.90364 1.90561 1.64843 1.56686 1.37758 1.42015 1.47541 1.16213 1.17328 1.18991 1.28164 1.01679 0.96852 0.92759 1.26120 0.95431 0.98273 1.01549 1.69812 1.34088 1.21172 1.32535 0.85370 0.80838 0.77626 0.77715 1.17930 1.20348 1.15307 1.84000 0.95259 1.10657 1.65626 0.87704 0.87511 0.87796 0.89908 0.89454 0.89104 0.76371 0.91497 0.88790 0.92878 0.89864 0.91765 0.83995 0.86529 0.89822 0.77416 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.46 71.24 0.75 -0.17 16 2 C 0.07 1.34 7.39 88.46 0.65 2.00 16 3 N -0.50 -11.76 10.50 -178.29 -1.87 -13.63 16 4 C 0.14 3.55 6.79 42.09 0.29 3.83 16 5 C -0.09 -1.85 9.70 71.23 0.69 -1.16 16 6 C -0.33 -8.17 6.48 23.88 0.15 -8.02 16 7 C 0.60 15.59 7.78 86.45 0.67 16.26 16 8 O -0.55 -16.56 14.27 -4.31 -0.06 -16.62 16 9 N -0.72 -15.72 4.98 -467.07 -2.33 -18.05 16 10 C 0.12 2.40 5.31 86.38 0.46 2.86 16 11 C 0.08 1.41 2.81 44.91 0.13 1.54 16 12 H 0.08 1.06 7.80 -2.39 -0.02 1.04 16 13 C -0.14 -2.23 9.41 71.98 0.68 -1.55 16 14 N -0.69 -18.42 5.93 -495.59 -2.94 -21.35 16 15 C 0.06 1.62 5.96 85.56 0.51 2.13 16 16 C 0.45 19.15 7.82 87.66 0.69 19.84 16 17 O -0.61 -33.02 15.78 -3.06 -0.05 -33.07 16 18 N -0.59 -26.49 5.09 -306.99 -1.56 -28.05 16 19 C -0.33 -18.69 10.16 84.04 0.85 -17.84 16 20 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 21 C -0.02 -0.82 5.50 84.92 0.47 -0.36 16 22 N -0.94 -55.50 13.96 21.66 0.30 -55.20 16 23 Si 0.96 37.30 27.74 68.60 1.90 39.21 16 24 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 25 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 26 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 27 S 0.19 3.65 22.31 -56.49 -1.26 2.39 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.09 2.13 6.01 -2.39 -0.01 2.11 16 34 H 0.40 8.04 6.56 -92.70 -0.61 7.43 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 40 H 0.34 10.01 6.41 -89.69 -0.58 9.44 16 41 H 0.12 2.67 7.44 -2.39 -0.02 2.65 16 42 H 0.08 1.71 8.06 -2.38 -0.02 1.70 16 43 H 0.39 14.27 5.76 -92.71 -0.53 13.73 16 44 H 0.28 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -80.71 381.30 -1.59 -82.30 By element: Atomic # 1 Polarization: 43.41 SS G_CDS: -0.71 Total: 42.70 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.98 Total: 19.36 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -8.40 Total: -136.28 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.11 Total: -49.69 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 1.90 Total: 39.21 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.26 Total: 2.39 kcal Total: -80.71 -1.59 -82.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731635856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.815 kcal (2) G-P(sol) polarization free energy of solvation -80.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds