Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29958 * 125.31105 * 2 1 4 4 O 1.41867 * 107.41707 * 180.24515 * 3 2 1 5 5 N 1.41878 * 106.38727 * 359.71839 * 4 3 2 6 6 C 1.29953 * 107.41548 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.30344 * 180.02562 * 6 5 4 8 8 N 1.46907 * 109.46787 * 262.66792 * 7 6 5 9 9 C 1.46906 * 110.99601 * 198.31430 * 8 7 6 10 10 C 1.53000 * 109.46715 * 170.00195 * 9 8 7 11 11 N 1.46501 * 109.46841 * 180.02562 * 10 9 8 12 12 C 1.34774 * 119.99993 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00102 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00055 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47108 * 179.97438 * 14 12 11 16 16 C 1.76202 * 99.99852 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00581 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99662 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00190 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99588 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47243 * 60.00326 * 20 18 16 22 22 H 1.48502 * 109.46607 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47128 * 299.99874 * 20 18 16 24 24 C 1.46900 * 111.00034 * 74.36358 * 8 7 6 25 25 C 1.52999 * 117.50059 * 1.65058 * 24 8 7 26 26 C 1.52998 * 60.00093 * 252.51612 * 25 24 8 27 27 H 1.09003 * 109.46926 * 264.95158 * 1 2 3 28 28 H 1.09004 * 109.46714 * 24.94822 * 1 2 3 29 29 H 1.08992 * 109.47212 * 144.94907 * 1 2 3 30 30 H 1.08995 * 109.47188 * 142.67219 * 7 6 5 31 31 H 1.09006 * 109.47262 * 22.66631 * 7 6 5 32 32 H 1.08994 * 109.47204 * 49.99638 * 9 8 7 33 33 H 1.09000 * 109.46672 * 289.99692 * 9 8 7 34 34 H 1.08999 * 109.47425 * 60.00134 * 10 9 8 35 35 H 1.09000 * 109.47140 * 299.99210 * 10 9 8 36 36 H 0.97006 * 120.00151 * 359.97438 * 11 10 9 37 37 H 1.09004 * 109.47354 * 300.00143 * 14 12 11 38 38 H 1.09000 * 109.47363 * 60.00302 * 14 12 11 39 39 H 0.97003 * 119.99853 * 179.97438 * 19 18 16 40 40 H 1.08996 * 115.55177 * 147.36485 * 24 8 7 41 41 H 1.09009 * 117.49596 * 0.02562 * 25 24 8 42 42 H 1.08994 * 117.49677 * 145.02007 * 25 24 8 43 43 H 1.08998 * 117.49595 * 252.51226 * 26 25 24 44 44 H 1.09004 * 117.51662 * 107.48265 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6246 -0.0058 5 7 3.5709 -0.7937 -0.0025 6 6 2.3212 -1.1499 0.0051 7 6 1.8208 -2.5713 0.0115 8 7 1.4842 -2.9781 -1.3594 9 6 0.6075 -4.1569 -1.3585 10 6 0.0790 -4.4005 -2.7735 11 7 -0.7957 -5.5757 -2.7725 12 6 -1.3797 -5.9820 -3.9171 13 8 -1.1808 -5.3751 -4.9481 14 6 -2.2790 -7.1913 -3.9162 15 16 -2.9056 -7.4785 -5.5898 16 6 -3.8969 -8.9070 -5.3044 17 1 -3.9650 -9.3276 -4.3121 18 6 -4.5902 -9.4918 -6.3551 19 7 -4.5068 -8.9795 -7.5647 20 14 -5.6416 -11.0059 -6.0524 21 1 -6.6985 -10.6843 -5.0602 22 1 -6.2733 -11.4326 -7.3268 23 1 -4.7894 -12.1039 -5.5297 24 6 2.6984 -3.2256 -2.1483 25 6 4.0454 -3.0676 -1.4401 26 6 3.5925 -2.0249 -2.4641 27 1 -0.3633 -0.0904 1.0237 28 1 -0.3633 0.9318 -0.4335 29 1 -0.3633 -0.8412 -0.5901 30 1 0.9327 -2.6411 0.6395 31 1 2.5967 -3.2280 0.4051 32 1 -0.2299 -3.9864 -0.6821 33 1 1.1714 -5.0286 -1.0262 34 1 0.9166 -4.5710 -3.4499 35 1 -0.4848 -3.5288 -3.1058 36 1 -0.9545 -6.0614 -1.9479 37 1 -1.7152 -8.0632 -3.5843 38 1 -3.1163 -7.0209 -3.2394 39 1 -4.9910 -9.3884 -8.2991 40 1 2.6161 -4.0049 -2.9059 41 1 4.0306 -2.7803 -0.3887 42 1 4.8495 -3.7431 -1.7316 43 1 4.0988 -2.0146 -3.4294 44 1 3.2796 -1.0513 -2.0869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731871242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = 81.145814 kcal Electronic energy + Delta-G solvation = -26354.853849 eV Core-core repulsion = 22438.789769 eV Total energy + Delta-G solvation = -3916.064079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.73688 -40.66510 -39.94226 -36.42356 -35.53919 -34.56319 -34.50187 -34.06644 -31.54105 -29.70913 -29.43444 -27.66338 -26.86188 -24.25822 -23.66680 -23.03893 -21.83762 -21.75630 -20.84392 -19.80021 -18.40504 -17.83641 -17.44964 -17.10837 -16.94453 -16.84830 -16.69088 -16.32974 -15.88199 -15.60428 -15.33202 -15.22287 -14.64320 -14.62058 -14.30125 -14.17186 -13.96942 -13.73777 -13.50513 -13.37213 -13.13694 -13.06256 -12.88350 -12.83609 -12.63148 -12.55558 -12.52234 -12.00791 -11.78364 -11.71231 -11.61989 -11.57130 -11.27624 -11.10004 -10.93347 -10.23043 -10.04632 -9.36092 -8.63190 -8.31644 -6.09385 -0.53079 0.91261 1.30197 1.46178 1.49172 1.52736 1.59666 1.68005 2.05825 2.22603 2.31032 2.72613 2.85399 2.98393 3.02498 3.37162 3.62925 3.69832 3.85487 3.89185 3.97015 4.06162 4.12237 4.18004 4.22380 4.37834 4.39728 4.50854 4.57463 4.58416 4.68072 4.68756 4.72247 4.82216 4.95349 4.99540 5.03738 5.11128 5.18405 5.44649 5.46609 5.72502 5.87533 5.90895 6.22536 6.58317 7.09732 7.32750 8.77110 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.001762 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.305043 B =15886.409616 C =16170.887111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.103 3.897 3 N -0.315 5.315 4 O -0.024 6.024 5 N -0.277 5.277 6 C 0.093 3.907 7 C 0.109 3.891 8 N -0.503 5.503 9 C 0.059 3.941 10 C 0.124 3.876 11 N -0.708 5.708 12 C 0.534 3.466 13 O -0.568 6.568 14 C -0.128 4.128 15 S -0.158 6.158 16 C -0.544 4.544 17 H 0.085 0.915 18 C 0.011 3.989 19 N -0.912 5.912 20 Si 0.998 3.002 21 H -0.261 1.261 22 H -0.282 1.282 23 H -0.262 1.262 24 C 0.017 3.983 25 C -0.199 4.199 26 C -0.188 4.188 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.155 0.845 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.420 0.580 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.270 0.730 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.414 11.650 23.985 29.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 N -0.064 5.064 4 O -0.156 6.156 5 N -0.025 5.025 6 C -0.092 4.092 7 C -0.019 4.019 8 N -0.227 5.227 9 C -0.068 4.068 10 C 0.000 4.000 11 N -0.363 5.363 12 C 0.319 3.681 13 O -0.447 6.447 14 C -0.280 4.280 15 S 0.069 5.931 16 C -0.692 4.692 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.819 3.181 21 H -0.185 1.185 22 H -0.207 1.207 23 H -0.186 1.186 24 C -0.092 4.092 25 C -0.238 4.238 26 C -0.226 4.226 27 H 0.142 0.858 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.257 0.743 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.663 13.925 21.914 28.887 hybrid contribution -0.533 -2.201 1.103 2.519 sum 12.130 11.724 23.017 28.537 Atomic orbital electron populations 1.20862 0.81235 1.06466 1.06661 1.25203 1.01953 0.87886 0.92921 1.79951 0.88825 1.21087 1.16558 1.93382 1.21597 1.14659 1.85928 1.79959 1.18944 0.90693 1.12904 1.24864 0.89108 1.00175 0.95006 1.21113 1.04284 0.85368 0.91165 1.61509 1.14501 1.35599 1.11056 1.22254 0.97430 0.91403 0.95696 1.21252 0.93191 0.87460 0.98120 1.45528 1.48837 1.31364 1.10576 1.20036 0.79812 0.84582 0.83635 1.90713 1.62688 1.57389 1.33863 1.23367 1.02123 0.99347 1.03114 1.85642 1.60506 1.38336 1.08566 1.23178 1.33200 1.14351 0.98495 0.89698 1.26138 0.97782 1.01367 0.94029 1.70184 1.41934 1.41674 1.01064 0.85012 0.78075 0.77150 0.77815 1.18537 1.20696 1.18639 1.22864 0.85740 1.00046 1.00530 1.23669 0.98623 1.02472 0.99003 1.23129 1.04383 0.94316 1.00758 0.85781 0.89505 0.86447 0.82772 0.89381 0.85717 0.91234 0.93179 0.91985 0.74265 0.87091 0.86850 0.92092 0.85800 0.87193 0.87937 0.88927 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.14 71.23 0.72 0.27 16 2 C 0.10 1.38 7.19 43.49 0.31 1.70 16 3 N -0.31 -6.59 12.98 -47.16 -0.61 -7.20 16 4 O -0.02 -0.57 13.71 70.18 0.96 0.39 16 5 N -0.28 -5.32 8.66 -47.16 -0.41 -5.73 16 6 C 0.09 1.20 4.72 43.49 0.21 1.40 16 7 C 0.11 0.62 4.76 85.55 0.41 1.03 16 8 N -0.50 -4.65 4.66 -875.50 -4.08 -8.72 16 9 C 0.06 0.38 5.04 86.30 0.43 0.81 16 10 C 0.12 2.05 5.66 86.38 0.49 2.54 16 11 N -0.71 -13.62 5.56 -463.06 -2.57 -16.19 16 12 C 0.53 17.69 7.85 87.66 0.69 18.37 16 13 O -0.57 -25.04 15.86 -3.03 -0.05 -25.09 16 14 C -0.13 -4.64 6.16 71.24 0.44 -4.20 16 15 S -0.16 -8.48 20.57 -56.49 -1.16 -9.64 16 16 C -0.54 -30.14 9.50 67.96 0.65 -29.49 16 17 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 18 C 0.01 0.64 5.49 84.86 0.47 1.11 16 19 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 20 Si 1.00 42.46 29.55 68.60 2.03 44.49 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 C 0.02 0.24 5.76 44.92 0.26 0.50 16 25 C -0.20 -2.82 8.82 30.59 0.27 -2.55 16 26 C -0.19 -3.42 9.46 30.59 0.29 -3.13 16 27 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.12 0.29 8.03 -2.39 -0.02 0.27 16 30 H 0.15 -0.35 7.71 -2.39 -0.02 -0.37 16 31 H 0.09 0.45 6.21 -2.38 -0.01 0.43 16 32 H 0.12 0.04 7.84 -2.39 -0.02 0.02 16 33 H 0.07 0.29 8.12 -2.39 -0.02 0.27 16 34 H 0.05 1.04 6.47 -2.39 -0.02 1.03 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.42 4.53 8.47 -92.70 -0.79 3.74 16 37 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 39 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.12 1.84 6.40 -2.39 -0.02 1.82 16 41 H 0.11 1.53 4.03 -2.38 -0.01 1.52 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 1.56 5.37 -2.39 -0.01 1.55 16 Total: -1.00 -84.47 378.40 0.28 -84.18 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.26 Total: 10.20 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.63 Total: -11.65 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -7.39 Total: -92.88 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.91 Total: -24.70 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -84.47 0.28 -84.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731871242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.329 kcal (2) G-P(sol) polarization free energy of solvation -84.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds