Wall clock time and date at job start Sat Apr 11 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 110.27558 * 2 1 4 4 C 1.34777 * 119.99665 * 300.97772 * 3 2 1 5 5 O 1.21283 * 119.99990 * 359.71991 * 4 3 2 6 6 C 1.50698 * 119.99538 * 179.72653 * 4 3 2 7 7 S 1.81404 * 109.47096 * 179.97438 * 6 4 3 8 8 C 1.81390 * 103.00301 * 179.97438 * 7 6 4 9 9 C 1.47197 * 109.47591 * 180.02562 * 8 7 6 10 10 N 8.77121 * 90.39620 * 330.66825 * 2 1 3 11 11 C 1.54595 * 110.30974 * 237.90858 * 2 1 3 12 12 C 1.55195 * 102.80261 * 219.04982 * 11 2 1 13 13 N 1.48537 * 103.23713 * 37.43835 * 12 11 2 14 14 C 1.46896 * 110.99871 * 200.25830 * 13 12 11 15 15 C 1.50702 * 109.46864 * 287.38790 * 14 13 12 16 16 O 1.21295 * 120.00001 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99974 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00299 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99397 * 0.02562 * 18 17 15 20 20 C 1.38943 * 120.00145 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00371 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 120.00013 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47107 * 89.99908 * 22 20 18 24 24 H 1.48499 * 109.47018 * 210.00028 * 22 20 18 25 25 H 1.48503 * 109.46798 * 329.99877 * 22 20 18 26 26 C 1.47909 * 105.81661 * 320.77015 * 13 12 11 27 27 H 1.09001 * 109.46396 * 59.29922 * 1 2 3 28 28 H 1.08998 * 109.46863 * 179.29590 * 1 2 3 29 29 H 1.09000 * 109.46862 * 299.30062 * 1 2 3 30 30 H 0.97001 * 119.99790 * 120.69485 * 3 2 1 31 31 H 1.09003 * 109.47112 * 299.99065 * 6 4 3 32 32 H 1.08993 * 109.47916 * 59.99687 * 6 4 3 33 33 H 1.09002 * 109.47316 * 299.99740 * 8 7 6 34 34 H 1.08999 * 109.47306 * 59.99658 * 8 7 6 35 35 H 1.09012 * 110.72105 * 337.38714 * 11 2 1 36 36 H 1.08998 * 110.72089 * 100.66976 * 11 2 1 37 37 H 1.08993 * 110.68034 * 278.98977 * 12 11 2 38 38 H 1.09000 * 110.78385 * 155.92671 * 12 11 2 39 39 H 1.08991 * 109.47400 * 47.39175 * 14 13 12 40 40 H 1.09002 * 109.46711 * 167.39259 * 14 13 12 41 41 H 0.97001 * 120.00120 * 0.02562 * 17 15 14 42 42 H 0.96997 * 120.00079 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.91433 * 265.97678 * 26 13 12 44 44 H 1.09001 * 110.08290 * 144.77945 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0378 1.3742 0.0000 4 6 1.7077 2.2145 -1.0008 5 8 0.9946 1.8314 -1.9039 6 6 2.2249 3.6299 -0.9975 7 16 1.6106 4.5015 -2.4651 8 6 2.3268 6.1583 -2.2853 9 6 1.9112 6.9984 -3.4203 10 7 1.5907 7.6465 -4.2966 11 6 2.0667 -0.7703 -1.2283 12 6 3.2883 -1.5326 -0.6494 13 7 2.8334 -1.9217 0.7100 14 6 3.9768 -2.2224 1.5817 15 6 4.5876 -3.5381 1.1731 16 8 4.1169 -4.1635 0.2465 17 7 5.6574 -4.0194 1.8366 18 6 6.2134 -5.2160 1.4645 19 1 5.7943 -5.7728 0.6395 20 6 7.3161 -5.7124 2.1489 21 7 7.8263 -5.0347 3.1525 22 14 8.0741 -7.3427 1.6415 23 1 9.1267 -7.1030 0.6218 24 1 8.6760 -7.9997 2.8294 25 1 7.0220 -8.2211 1.0699 26 6 2.0645 -0.7672 1.2236 27 1 -0.3632 0.5247 -0.8837 28 1 -0.3633 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 2.6081 1.6805 0.7224 31 1 1.8785 4.1413 -0.0994 32 1 3.3147 3.6187 -1.0118 33 1 1.9772 6.6063 -1.3551 34 1 3.4141 6.0841 -2.2667 35 1 1.3179 -1.4681 -1.6033 36 1 2.3776 -0.0788 -2.0115 37 1 4.1581 -0.8784 -0.5915 38 1 3.5119 -2.4159 -1.2476 39 1 4.7216 -1.4319 1.4898 40 1 3.6386 -2.2845 2.6161 41 1 6.0341 -3.5191 2.5774 42 1 8.5963 -5.3811 3.6300 43 1 2.7148 -0.1204 1.8125 44 1 1.2327 -1.1144 1.8366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733395105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:04 Heat of formation + Delta-G solvation = -23.788830 kcal Electronic energy + Delta-G solvation = -26349.421861 eV Core-core repulsion = 22428.807474 eV Total energy + Delta-G solvation = -3920.614387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.70935 -38.85842 -37.63170 -37.16137 -34.75537 -33.83474 -32.31705 -31.24981 -30.91869 -29.99451 -29.32605 -27.58791 -25.38252 -23.94222 -22.08646 -21.09539 -19.82478 -19.19679 -18.88858 -17.90798 -17.37289 -16.78585 -16.44344 -16.19060 -16.06299 -15.47000 -15.04371 -14.91701 -14.63034 -14.55665 -14.34250 -13.97745 -13.62702 -13.46075 -13.36416 -13.35008 -13.13813 -12.63110 -12.58963 -12.51248 -12.37729 -12.09705 -11.82793 -11.51604 -11.33763 -11.27877 -11.05676 -10.94152 -10.79299 -10.61986 -10.40424 -10.23335 -10.07291 -9.51277 -9.35543 -8.53385 -8.27559 -8.04912 -7.96329 -6.43371 -3.84010 0.43498 1.67889 2.17684 2.21147 2.53580 2.77909 3.16650 3.20780 3.25506 3.31553 3.88499 3.98492 4.14177 4.27041 4.32266 4.38778 4.41069 4.52408 4.62267 4.66945 4.80431 5.09295 5.20785 5.25743 5.37967 5.43028 5.56610 5.65243 5.74030 5.76416 5.86639 5.93226 6.14155 6.16280 6.24935 6.34784 6.39743 6.91620 7.04572 7.08775 7.17976 7.53868 7.82343 8.04785 8.60396 9.17064 9.52862 10.04985 10.74442 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.001839 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.700892 B =15225.087014 C =15871.592379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 N -0.715 5.715 4 C 0.532 3.468 5 O -0.510 6.510 6 C -0.136 4.136 7 S -0.131 6.131 8 C -0.026 4.026 9 C 0.220 3.780 10 N -0.405 5.405 11 C -0.120 4.120 12 C 0.040 3.960 13 N -0.487 5.487 14 C 0.037 3.963 15 C 0.445 3.555 16 O -0.575 6.575 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.036 3.964 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.399 0.601 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.047 0.953 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 21.796 -0.582 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.080 3.920 3 N -0.368 5.368 4 C 0.315 3.685 5 O -0.385 6.385 6 C -0.287 4.287 7 S 0.094 5.906 8 C -0.177 4.177 9 C -0.099 4.099 10 N -0.083 5.083 11 C -0.159 4.159 12 C -0.087 4.087 13 N -0.211 5.211 14 C -0.095 4.095 15 C 0.230 3.770 16 O -0.458 6.458 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.093 4.093 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.234 0.766 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.274 21.141 -3.853 24.267 hybrid contribution 2.643 0.644 2.331 3.582 sum -8.631 21.785 -1.522 23.482 Atomic orbital electron populations 1.22171 0.93014 1.03224 1.02927 1.21231 0.94739 0.79759 0.96289 1.46181 1.52552 1.12253 1.25850 1.19471 0.80916 0.85599 0.82481 1.90764 1.36032 1.76616 1.35079 1.23622 1.05950 0.97513 1.01664 1.88133 1.66900 1.04347 1.31262 1.20823 1.05645 0.95885 0.95299 1.27731 0.94110 0.94058 0.93956 1.81297 1.07783 1.09526 1.09717 1.22912 0.98189 0.98491 0.96324 1.23368 0.95177 0.99613 0.90582 1.64528 1.20929 1.33612 1.02057 1.22077 0.92295 0.97360 0.97755 1.19675 0.83272 0.87766 0.86289 1.90520 1.63360 1.60745 1.31219 1.41852 1.26541 1.20855 1.31041 1.19698 1.10380 0.96980 1.15688 0.87917 1.25243 0.97023 0.99733 0.95927 1.69606 1.24463 1.39274 1.21122 0.85866 0.79187 0.81429 0.77870 1.20458 1.20943 1.19393 1.23221 0.98902 0.91808 0.95388 0.90330 0.90914 0.92770 0.76568 0.86535 0.86484 0.85416 0.85358 0.89649 0.90387 0.94514 0.88189 0.93306 0.89341 0.77583 0.91921 0.93471 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.14 37.16 0.30 -1.25 16 2 C 0.17 1.67 0.94 -130.46 -0.12 1.55 16 3 N -0.72 -5.26 5.15 -46.35 -0.24 -5.50 16 4 C 0.53 4.39 7.04 -10.99 -0.08 4.31 16 5 O -0.51 -6.31 12.74 5.55 0.07 -6.23 16 6 C -0.14 -0.56 6.42 36.00 0.23 -0.33 16 7 S -0.13 -0.87 20.83 -107.50 -2.24 -3.11 16 8 C -0.03 -0.07 6.42 34.37 0.22 0.15 16 9 C 0.22 1.53 15.44 -20.76 -0.32 1.21 16 10 N -0.41 -4.21 18.54 42.16 0.78 -3.43 16 11 C -0.12 -1.53 5.85 -24.73 -0.14 -1.67 16 12 C 0.04 0.60 5.94 -1.76 -0.01 0.59 16 13 N -0.49 -7.48 4.91 -231.72 -1.14 -8.62 16 14 C 0.04 0.61 5.19 -4.98 -0.03 0.58 16 15 C 0.44 10.16 7.61 -10.99 -0.08 10.08 16 16 O -0.58 -15.23 14.64 5.54 0.08 -15.15 16 17 N -0.57 -13.94 5.29 -10.96 -0.06 -14.00 16 18 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 22 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.04 0.38 6.12 -2.75 -0.02 0.37 16 27 H 0.08 0.91 6.16 -51.93 -0.32 0.59 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.40 1.81 8.09 -40.82 -0.33 1.48 16 31 H 0.12 0.15 8.14 -51.92 -0.42 -0.27 16 32 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.13 -0.01 8.14 -51.92 -0.42 -0.44 16 34 H 0.13 0.03 8.14 -51.92 -0.42 -0.40 16 35 H 0.08 1.15 7.86 -51.92 -0.41 0.74 16 36 H 0.08 1.01 6.70 -51.93 -0.35 0.67 16 37 H 0.04 0.52 7.81 -51.93 -0.41 0.12 16 38 H 0.10 1.84 7.10 -51.93 -0.37 1.47 16 39 H 0.05 0.72 7.83 -51.93 -0.41 0.31 16 40 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 41 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.05 0.41 7.09 -51.93 -0.37 0.04 16 44 H 0.09 0.95 7.68 -51.93 -0.40 0.55 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -35.72 382.93 -7.70 -43.42 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.14 Total: 6.67 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.29 Total: 7.78 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.07 Total: -54.90 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.15 Total: -21.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.24 Total: -3.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.72 -7.70 -43.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733395105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.631 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds