Wall clock time and date at job start Sat Apr 11 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38302 * 119.80921 * 2 1 4 4 C 1.38211 * 120.19117 * 179.97438 * 3 2 1 5 5 F 1.35104 * 120.09866 * 180.02562 * 4 3 2 6 6 C 1.39901 * 119.80631 * 0.27489 * 4 3 2 7 7 C 1.47547 * 120.18986 * 179.74603 * 6 4 3 8 8 O 1.21591 * 119.99731 * 90.00447 * 7 6 4 9 9 N 1.34777 * 119.99804 * 269.99753 * 7 6 4 10 10 C 1.46503 * 119.99737 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46984 * 180.02562 * 10 9 7 12 12 O 1.42894 * 110.88670 * 297.57383 * 11 10 9 13 13 C 1.55157 * 111.00481 * 173.64980 * 11 10 9 14 14 C 1.54321 * 102.94287 * 206.42657 * 13 11 10 15 15 N 1.47023 * 107.27419 * 22.18916 * 14 13 11 16 16 C 1.36935 * 125.65106 * 181.09328 * 15 14 13 17 17 H 1.07992 * 120.00448 * 179.97438 * 16 15 14 18 18 C 1.38812 * 119.99777 * 359.96611 * 16 15 14 19 19 N 1.31622 * 120.00353 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47197 * 89.99688 * 20 18 16 22 22 H 1.48498 * 109.47343 * 209.99863 * 20 18 16 23 23 H 1.48499 * 109.47226 * 330.00010 * 20 18 16 24 24 C 1.47423 * 108.70206 * 1.06307 * 15 14 13 25 25 C 1.39908 * 119.62225 * 359.45450 * 6 4 3 26 26 F 1.35102 * 120.09767 * 180.27187 * 25 6 4 27 27 C 1.38214 * 119.80341 * 0.54667 * 25 6 4 28 28 H 1.09000 * 109.46903 * 90.00035 * 1 2 3 29 29 H 1.09003 * 109.47157 * 209.99940 * 1 2 3 30 30 H 1.09001 * 109.46623 * 329.99774 * 1 2 3 31 31 H 1.08008 * 119.90355 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00180 * 0.02562 * 9 7 6 33 33 H 1.09005 * 109.46773 * 300.00269 * 10 9 7 34 34 H 1.08995 * 109.47248 * 59.99823 * 10 9 7 35 35 H 0.96698 * 114.00089 * 59.29803 * 12 11 10 36 36 H 1.09000 * 110.71745 * 324.78436 * 13 11 10 37 37 H 1.08994 * 110.72274 * 88.05782 * 13 11 10 38 38 H 1.09004 * 109.88437 * 262.77423 * 14 13 11 39 39 H 1.09007 * 109.88407 * 141.61310 * 14 13 11 40 40 H 0.97001 * 120.00182 * 180.02562 * 19 18 16 41 41 H 1.08994 * 110.36732 * 217.03417 * 24 15 14 42 42 H 1.09005 * 110.45890 * 94.75186 * 24 15 14 43 43 H 1.08002 * 119.90725 * 179.74778 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.2000 0.0000 4 6 3.5767 1.2092 0.0005 5 9 4.2464 2.3826 0.0011 6 6 4.2802 0.0000 -0.0047 7 6 5.7556 0.0000 -0.0099 8 8 6.3672 -0.0026 1.0410 9 7 6.4254 0.0026 -1.1794 10 6 7.8904 0.0020 -1.1845 11 6 8.3954 0.0061 -2.6287 12 8 7.9797 -1.1751 -3.3171 13 6 9.9379 0.1659 -2.6781 14 6 10.1740 0.8174 -4.0570 15 7 8.9177 1.4712 -4.4518 16 6 8.7032 2.1462 -5.6237 17 1 7.7401 2.5932 -5.8210 18 6 9.7238 2.2562 -6.5581 19 7 10.8979 1.7121 -6.3174 20 14 9.4311 3.1765 -8.1570 21 1 9.7800 4.6085 -7.9751 22 1 10.2794 2.5924 -9.2268 23 1 8.0012 3.0603 -8.5404 24 6 7.9268 1.2790 -3.3772 25 6 3.5767 -1.2094 0.0010 26 9 4.2464 -2.3827 0.0016 27 6 2.1946 -1.2001 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6499 2.1327 0.0004 32 1 5.9375 0.0050 -2.0178 33 1 8.2559 0.8906 -0.6696 34 1 8.2552 -0.8893 -0.6742 35 1 7.0205 -1.2912 -3.3550 36 1 10.2836 0.8205 -1.8781 37 1 10.4283 -0.8059 -2.6217 38 1 10.4396 0.0533 -4.7875 39 1 10.9708 1.5578 -3.9856 40 1 11.6112 1.7893 -6.9702 41 1 6.9337 1.1265 -3.7998 42 1 7.9243 2.1359 -2.7035 43 1 1.6498 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733488099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:10 Heat of formation + Delta-G solvation = -146.213195 kcal Electronic energy + Delta-G solvation = -29749.842950 eV Core-core repulsion = 25237.786707 eV Total energy + Delta-G solvation = -4512.056243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.24168 -50.21783 -41.37720 -40.23846 -39.51148 -36.83896 -35.50224 -34.11985 -33.82662 -31.54287 -31.47192 -30.07013 -28.66624 -27.36864 -25.43690 -24.10076 -23.66080 -22.39618 -21.69951 -21.45499 -19.68646 -18.87393 -18.63977 -18.62627 -17.87611 -17.43587 -16.93223 -16.90150 -16.74192 -16.51946 -16.37867 -16.17453 -15.76132 -15.72880 -15.34978 -14.98606 -14.77049 -14.39090 -14.37905 -14.20380 -13.93928 -13.73526 -13.30340 -13.00527 -12.99185 -12.93298 -12.79635 -12.76214 -12.56830 -12.39493 -12.12033 -12.04489 -11.85261 -11.81914 -11.32638 -10.98640 -10.70594 -10.41527 -10.00171 -9.93988 -8.91623 -7.86246 -5.22276 -0.41544 -0.16988 1.15164 1.44957 1.47500 1.55969 1.79141 2.14981 2.47816 2.57739 3.10375 3.17710 3.24301 3.31814 3.41170 3.56612 3.61956 3.67651 3.87375 3.91316 4.02123 4.39505 4.46560 4.53360 4.53516 4.57193 4.58217 4.68810 4.74465 4.88257 4.89032 4.91042 4.91378 4.98994 5.09494 5.26811 5.29516 5.41762 5.61137 5.62080 5.73683 6.11886 6.16838 6.71923 6.82010 7.07364 7.74186 8.38424 9.24513 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014813 B = 0.002837 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.825571 B = 9867.361643 C =10733.938330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.002 3.998 3 C -0.158 4.158 4 C 0.150 3.850 5 F -0.136 7.136 6 C -0.230 4.230 7 C 0.567 3.433 8 O -0.563 6.563 9 N -0.703 5.703 10 C 0.116 3.884 11 C 0.122 3.878 12 O -0.550 6.550 13 C -0.120 4.120 14 C 0.190 3.810 15 N -0.620 5.620 16 C -0.243 4.243 17 H 0.085 0.915 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.981 3.019 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.113 3.887 25 C 0.153 3.847 26 F -0.133 7.133 27 C -0.156 4.156 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.412 0.588 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.382 0.618 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.009 0.991 39 H 0.011 0.989 40 H 0.247 0.753 41 H 0.052 0.948 42 H 0.032 0.968 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.822 -5.480 14.590 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 C -0.176 4.176 4 C 0.129 3.871 5 F -0.114 7.114 6 C -0.235 4.235 7 C 0.353 3.647 8 O -0.442 6.442 9 N -0.354 5.354 10 C -0.008 4.008 11 C 0.080 3.920 12 O -0.357 6.357 13 C -0.159 4.159 14 C 0.065 3.935 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.103 0.897 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.809 3.191 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.191 1.191 24 C -0.012 4.012 25 C 0.133 3.867 26 F -0.111 7.111 27 C -0.174 4.174 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.193 0.807 32 H 0.248 0.752 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.230 0.770 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -23.557 -5.508 15.066 28.500 hybrid contribution 0.418 0.638 -1.310 1.516 sum -23.139 -4.870 13.756 27.356 Atomic orbital electron populations 1.21051 0.86289 1.05392 1.04776 1.20139 0.98772 0.89996 0.90932 1.21396 0.90040 1.01889 1.04281 1.17554 0.90849 0.78908 0.99742 1.91560 1.81163 1.45275 1.93399 1.19788 0.93246 0.94145 1.16289 1.18145 0.87136 0.75648 0.83787 1.90800 1.70111 1.50632 1.32657 1.45871 1.07503 1.73509 1.08540 1.21891 0.79130 1.03562 0.96251 1.22398 0.95868 0.85152 0.88596 1.86611 1.28100 1.42285 1.78678 1.22808 0.92659 1.01853 0.98552 1.20840 0.87841 0.93600 0.91209 1.44623 1.09732 1.63076 1.17177 1.19458 0.97838 1.26298 0.93581 0.89736 1.25703 0.95853 1.02223 1.02316 1.70197 1.03490 1.50192 1.36223 0.85042 0.77657 0.77690 0.78707 1.21255 1.22211 1.19072 1.22321 0.93327 0.95181 0.90408 1.17486 0.90751 0.78806 0.99657 1.91557 1.81118 1.45056 1.93389 1.21398 0.90035 1.01807 1.04160 0.88405 0.88989 0.89183 0.80748 0.75182 0.90143 0.89957 0.76976 0.88627 0.89692 0.97238 0.97104 0.94409 0.92986 0.95005 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.14 10.00 71.24 0.71 0.57 16 2 C 0.00 0.02 5.88 -19.83 -0.12 -0.10 16 3 C -0.16 -1.89 9.65 22.28 0.22 -1.67 16 4 C 0.15 3.03 7.29 22.67 0.17 3.19 16 5 F -0.14 -3.35 16.83 44.97 0.76 -2.60 16 6 C -0.23 -5.33 5.64 -20.01 -0.11 -5.44 16 7 C 0.57 16.68 6.54 86.70 0.57 17.25 16 8 O -0.56 -20.86 17.11 -4.00 -0.07 -20.93 16 9 N -0.70 -18.39 5.16 -466.26 -2.41 -20.80 16 10 C 0.12 3.35 4.89 86.38 0.42 3.77 16 11 C 0.12 4.13 0.95 -9.40 -0.01 4.12 16 12 O -0.55 -18.71 13.19 -148.98 -1.96 -20.68 16 13 C -0.12 -4.57 6.16 31.78 0.20 -4.37 16 14 C 0.19 9.74 5.37 86.73 0.47 10.20 16 15 N -0.62 -32.21 3.39 -691.98 -2.35 -34.55 16 16 C -0.24 -13.73 10.28 84.03 0.86 -12.87 16 17 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 18 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 19 N -0.95 -58.63 10.31 21.65 0.22 -58.41 16 20 Si 0.98 46.20 29.55 68.60 2.03 48.22 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.11 4.49 5.93 86.86 0.51 5.00 16 25 C 0.15 2.92 7.29 22.67 0.17 3.08 16 26 F -0.13 -2.98 16.83 44.97 0.76 -2.22 16 27 C -0.16 -1.72 9.65 22.28 0.22 -1.50 16 28 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.09 -0.09 8.08 -2.39 -0.02 -0.10 16 30 H 0.09 -0.04 8.08 -2.39 -0.02 -0.06 16 31 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.41 9.04 7.28 -92.71 -0.68 8.37 16 33 H 0.08 2.40 8.11 -2.38 -0.02 2.38 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.38 9.69 8.16 -74.06 -0.60 9.08 16 36 H 0.10 3.20 8.01 -2.39 -0.02 3.18 16 37 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.01 0.55 7.38 -2.39 -0.02 0.53 16 39 H 0.01 0.61 7.51 -2.38 -0.02 0.59 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.05 1.90 7.97 -2.39 -0.02 1.88 16 42 H 0.03 1.26 8.03 -2.38 -0.02 1.24 16 43 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -79.61 370.02 1.50 -78.11 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -0.21 Total: 16.08 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 4.73 Total: 17.77 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -4.53 Total: -113.76 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -2.03 Total: -41.61 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 1.51 Total: -4.82 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.61 1.50 -78.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733488099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.101 kcal (2) G-P(sol) polarization free energy of solvation -79.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds