Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00396 * 2 1 4 4 H 1.48507 * 109.46981 * 95.60769 * 3 2 1 5 5 H 1.48492 * 109.47381 * 215.60954 * 3 2 1 6 6 H 1.48499 * 109.46911 * 335.61482 * 3 2 1 7 7 C 1.38815 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00298 * 319.69891 * 7 2 1 9 9 N 1.36935 * 120.00049 * 139.70590 * 7 2 1 10 10 C 1.47157 * 120.97888 * 345.62063 * 9 7 2 11 11 C 1.53302 * 108.38043 * 230.51163 * 10 9 7 12 12 O 1.42963 * 109.22102 * 307.69434 * 11 10 9 13 13 C 1.42966 * 114.16616 * 62.58288 * 12 11 10 14 14 C 1.47155 * 120.98326 * 165.33179 * 9 7 2 15 15 H 1.08994 * 109.68264 * 249.20844 * 14 9 7 16 16 C 1.52990 * 109.68073 * 9.76883 * 14 9 7 17 17 N 1.46505 * 109.47021 * 296.12202 * 16 14 9 18 18 C 1.34778 * 119.99965 * 179.97438 * 17 16 14 19 19 O 1.21283 * 120.00182 * 0.02562 * 18 17 16 20 20 C 1.50705 * 120.00035 * 180.02562 * 18 17 16 21 21 C 1.52993 * 109.46949 * 180.02562 * 20 18 17 22 22 O 1.42901 * 109.47033 * 180.02562 * 21 20 18 23 23 C 1.42900 * 114.00286 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47186 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.47342 * 59.99813 * 24 23 22 26 26 F 1.39903 * 109.47299 * 180.02562 * 24 23 22 27 27 F 1.39904 * 109.46881 * 300.00020 * 24 23 22 28 28 H 0.96994 * 119.99961 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.68432 * 350.22852 * 10 9 7 30 30 H 1.08996 * 109.68695 * 110.75285 * 10 9 7 31 31 H 1.09000 * 109.51383 * 67.61839 * 11 10 9 32 32 H 1.08996 * 109.50987 * 187.72696 * 11 10 9 33 33 H 1.09003 * 109.50841 * 57.34199 * 13 12 11 34 34 H 1.09003 * 109.51218 * 177.49163 * 13 12 11 35 35 H 1.08999 * 109.47456 * 56.12640 * 16 14 9 36 36 H 1.08999 * 109.47137 * 176.12499 * 16 14 9 37 37 H 0.96999 * 120.00125 * 0.02562 * 17 16 14 38 38 H 1.08999 * 109.47228 * 300.00724 * 20 18 17 39 39 H 1.08998 * 109.46543 * 60.00642 * 20 18 17 40 40 H 1.09003 * 109.46992 * 299.99672 * 21 20 18 41 41 H 1.08999 * 109.47491 * 60.00044 * 21 20 18 42 42 H 1.08996 * 109.47354 * 300.00014 * 23 22 21 43 43 H 1.09000 * 109.47018 * 60.00039 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6163 1.9779 1.3934 5 1 3.4835 1.4772 -0.8151 6 1 1.3935 2.6839 -0.5781 7 6 2.0102 -1.2022 -0.0005 8 1 1.6625 -2.0268 0.6040 9 7 3.1359 -1.3426 -0.7675 10 6 3.4576 -0.3717 -1.8255 11 6 3.7484 -1.1435 -3.1178 12 8 4.7330 -2.1463 -2.8556 13 6 4.3214 -3.1380 -1.9117 14 6 4.0629 -2.4654 -0.5540 15 1 5.0005 -2.0938 -0.1408 16 6 3.4371 -3.4737 0.4116 17 7 3.2498 -2.8443 1.7212 18 6 2.7095 -3.5478 2.7359 19 8 2.3788 -4.7021 2.5651 20 6 2.5163 -2.9002 4.0829 21 6 1.8906 -3.9086 5.0485 22 8 1.7069 -3.2943 6.3256 23 6 1.1247 -4.1553 7.3064 24 6 0.9762 -3.3970 8.6269 25 9 0.1511 -2.2836 8.4352 26 9 0.4067 -4.2401 9.5873 27 9 2.2354 -2.9742 9.0661 28 1 -0.4850 0.8400 0.0004 29 1 2.6108 0.2969 -1.9800 30 1 4.3350 0.2075 -1.5379 31 1 2.8329 -1.6162 -3.4733 32 1 4.1214 -0.4556 -3.8765 33 1 3.4079 -3.6180 -2.2630 34 1 5.1074 -3.8853 -1.8027 35 1 2.4718 -3.7981 0.0230 36 1 4.0959 -4.3360 0.5138 37 1 3.5139 -1.9210 1.8578 38 1 3.4815 -2.5758 4.4719 39 1 1.8575 -2.0380 3.9803 40 1 0.9255 -4.2333 4.6597 41 1 2.5497 -4.7707 5.1511 42 1 0.1439 -4.4851 6.9641 43 1 1.7678 -5.0225 7.4562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733703011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = -235.808987 kcal Electronic energy + Delta-G solvation = -30304.021143 eV Core-core repulsion = 25357.310510 eV Total energy + Delta-G solvation = -4946.710633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.31331 -47.88133 -47.75626 -39.66429 -38.73441 -38.13071 -35.55076 -33.79235 -32.33393 -31.69711 -30.96735 -29.42273 -27.53731 -25.84365 -23.67337 -23.51992 -23.35983 -22.07826 -20.12956 -19.70915 -18.86889 -18.84232 -18.00126 -17.28541 -16.77521 -16.49094 -16.13873 -15.90385 -15.67244 -15.15862 -15.10746 -14.77444 -14.68780 -14.47931 -14.38449 -14.22866 -14.02995 -13.94463 -13.93918 -13.91032 -13.50414 -13.20886 -12.88152 -12.46110 -12.22971 -12.03800 -11.90581 -11.76958 -11.46966 -11.44379 -11.07003 -10.83299 -10.53683 -10.29340 -10.06918 -9.92892 -9.72255 -9.42003 -9.28570 -8.50775 -8.39194 -7.28215 -6.15609 -3.28993 2.19091 2.94986 3.01504 3.28771 3.40779 3.48526 3.52298 3.73918 3.74223 4.24937 4.32400 4.44493 4.59196 4.68872 4.73981 4.86249 5.01082 5.12325 5.22677 5.36247 5.42807 5.53890 5.62818 5.72340 5.80223 5.86010 5.90166 5.92189 5.98547 6.09047 6.21288 6.39368 6.56422 6.61334 6.73404 6.89903 7.59099 7.67611 7.96362 8.13418 8.60357 8.74706 9.58615 9.93895 10.95548 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015735 B = 0.002550 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.098830 B =10979.506569 C =12157.339569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.041 3.959 3 Si 0.812 3.188 4 H -0.292 1.292 5 H -0.248 1.248 6 H -0.296 1.296 7 C -0.290 4.290 8 H 0.104 0.896 9 N -0.601 5.601 10 C 0.113 3.887 11 C 0.041 3.959 12 O -0.389 6.389 13 C 0.055 3.945 14 C 0.130 3.870 15 H 0.045 0.955 16 C 0.134 3.866 17 N -0.697 5.697 18 C 0.519 3.481 19 O -0.562 6.562 20 C -0.141 4.141 21 C 0.083 3.917 22 O -0.376 6.376 23 C 0.021 3.979 24 C 0.461 3.539 25 F -0.174 7.174 26 F -0.179 7.179 27 F -0.177 7.177 28 H 0.263 0.737 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.412 0.588 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 -7.682 10.005 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.161 4.161 3 Si 0.639 3.361 4 H -0.220 1.220 5 H -0.173 1.173 6 H -0.223 1.223 7 C -0.416 4.416 8 H 0.121 0.879 9 N -0.327 5.327 10 C -0.013 4.013 11 C -0.037 4.037 12 O -0.308 6.308 13 C -0.024 4.024 14 C 0.023 3.977 15 H 0.062 0.938 16 C 0.010 3.990 17 N -0.348 5.348 18 C 0.305 3.695 19 O -0.442 6.442 20 C -0.181 4.181 21 C 0.007 3.993 22 O -0.295 6.295 23 C -0.058 4.058 24 C 0.407 3.593 25 F -0.156 7.156 26 F -0.160 7.160 27 F -0.158 7.158 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.248 0.752 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.257 -8.207 9.846 13.854 hybrid contribution 0.046 1.645 0.495 1.718 sum 5.303 -6.562 10.341 13.346 Atomic orbital electron populations 1.70202 1.06183 1.27000 1.47479 1.24905 0.94526 0.97415 0.99267 0.88276 0.82390 0.86650 0.78781 1.22013 1.17319 1.22293 1.19039 0.98729 0.98695 1.25095 0.87889 1.44495 1.25119 1.26220 1.36844 1.22119 0.99309 0.92026 0.87815 1.23186 0.91733 0.90624 0.98124 1.87817 1.41681 1.39344 1.61936 1.22977 0.99894 0.90195 0.89341 1.21475 0.93182 0.89357 0.93708 0.93761 1.21214 1.01277 0.94332 0.82198 1.45918 1.62083 1.16550 1.10232 1.20101 0.77406 0.86287 0.85734 1.90665 1.51618 1.17683 1.84241 1.21441 1.04107 1.00348 0.92210 1.22278 1.01203 0.95158 0.80707 1.87845 1.82629 1.37977 1.21074 1.23462 1.02634 0.93308 0.86415 1.20224 0.74153 0.78270 0.86683 1.93233 1.72592 1.54598 1.95157 1.93203 1.85228 1.71229 1.66389 1.93215 1.40947 1.90686 1.90975 0.92740 0.90641 0.94533 0.93038 0.89814 0.92811 0.89497 0.90584 0.91965 0.75165 0.88181 0.87293 0.91430 0.91759 0.88416 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.57 13.97 55.49 0.78 -23.79 16 2 C 0.04 1.06 4.90 -17.43 -0.09 0.98 16 3 Si 0.81 19.05 26.36 -169.99 -4.48 14.56 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.25 -5.41 4.33 56.52 0.24 -5.17 16 6 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.29 -7.01 8.09 -15.06 -0.12 -7.14 16 8 H 0.10 2.62 5.30 -52.49 -0.28 2.35 16 9 N -0.60 -12.61 2.94 -164.06 -0.48 -13.10 16 10 C 0.11 2.28 4.41 -3.53 -0.02 2.26 16 11 C 0.04 0.72 6.99 37.31 0.26 0.98 16 12 O -0.39 -6.80 10.74 -35.23 -0.38 -7.18 16 13 C 0.05 0.87 6.31 37.53 0.24 1.11 16 14 C 0.13 2.25 3.19 -67.21 -0.21 2.03 16 15 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 16 C 0.13 2.24 4.42 -4.04 -0.02 2.22 16 17 N -0.70 -11.57 3.60 -60.29 -0.22 -11.78 16 18 C 0.52 8.47 7.83 -10.98 -0.09 8.39 16 19 O -0.56 -10.64 15.98 5.55 0.09 -10.55 16 20 C -0.14 -1.86 6.07 -27.88 -0.17 -2.03 16 21 C 0.08 1.00 5.23 37.15 0.19 1.19 16 22 O -0.38 -4.46 10.23 -35.23 -0.36 -4.82 16 23 C 0.02 0.18 5.90 37.16 0.22 0.40 16 24 C 0.46 4.61 3.32 37.16 0.12 4.74 16 25 F -0.17 -2.08 17.26 2.25 0.04 -2.04 16 26 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 27 F -0.18 -1.99 17.26 2.25 0.04 -1.95 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.08 1.65 4.88 -51.93 -0.25 1.39 16 30 H 0.04 0.75 6.82 -51.93 -0.35 0.39 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.47 7.54 -51.93 -0.39 1.08 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.41 6.82 7.60 -40.82 -0.31 6.51 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.07 0.85 8.10 -51.93 -0.42 0.42 16 41 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -30.45 358.91 -5.15 -35.61 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.95 Total: 6.15 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 0.32 Total: 15.12 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.08 Total: -48.67 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.65 Total: -22.55 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.12 Total: -5.63 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.48 Total: 14.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.45 -5.15 -35.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733703011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.200 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds