Wall clock time and date at job start Sat Apr 11 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29953 * 125.30873 * 2 1 4 4 O 1.41871 * 107.41413 * 180.02562 * 3 2 1 5 5 N 1.41874 * 106.39345 * 359.97438 * 4 3 2 6 6 C 1.29954 * 107.41180 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.30624 * 180.26856 * 6 5 4 8 8 N 1.46905 * 109.46867 * 269.68946 * 7 6 5 9 9 C 1.46895 * 110.99686 * 180.02562 * 8 7 6 10 10 C 1.53007 * 109.46587 * 180.02562 * 9 8 7 11 11 C 1.53778 * 113.61366 * 274.13159 * 10 9 8 12 12 C 1.53955 * 87.01909 * 220.05197 * 11 10 9 13 13 N 1.46501 * 113.53799 * 270.81132 * 12 11 10 14 14 C 1.34774 * 120.00198 * 252.49529 * 13 12 11 15 15 O 1.21279 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99982 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.46852 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99939 * 180.02562 * 17 16 14 19 19 H 1.08011 * 119.99798 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00543 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99789 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00539 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46817 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47333 * 119.99769 * 22 20 18 25 25 H 1.48500 * 109.47163 * 240.00073 * 22 20 18 26 26 C 1.53778 * 87.11224 * 25.36398 * 12 11 10 27 27 H 1.09005 * 109.46814 * 270.00326 * 1 2 3 28 28 H 1.09002 * 109.46953 * 29.99891 * 1 2 3 29 29 H 1.08993 * 109.47670 * 149.99833 * 1 2 3 30 30 H 1.08996 * 109.46885 * 29.68731 * 7 6 5 31 31 H 1.08999 * 109.47444 * 149.69055 * 7 6 5 32 32 H 1.00899 * 110.99477 * 303.95474 * 8 7 6 33 33 H 1.08999 * 109.47318 * 299.99591 * 9 8 7 34 34 H 1.08992 * 109.47632 * 60.00045 * 9 8 7 35 35 H 1.09001 * 112.84990 * 45.33526 * 10 9 8 36 36 H 1.08995 * 113.61392 * 334.57287 * 11 10 9 37 37 H 1.09001 * 113.60995 * 105.47803 * 11 10 9 38 38 H 1.08997 * 113.74240 * 139.94646 * 12 11 10 39 39 H 0.96999 * 119.99575 * 72.49586 * 13 12 11 40 40 H 1.08997 * 109.47082 * 300.00618 * 16 14 13 41 41 H 1.08998 * 109.46593 * 60.00158 * 16 14 13 42 42 H 0.96996 * 120.00636 * 179.97438 * 21 20 18 43 43 H 1.08996 * 113.61477 * 220.08694 * 26 12 11 44 44 H 1.09002 * 113.61637 * 89.18644 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5710 -0.7937 -0.0003 6 6 2.3212 -1.1500 -0.0002 7 6 1.8208 -2.5715 0.0058 8 7 1.6528 -3.0373 -1.3772 9 6 1.1644 -4.4223 -1.4105 10 6 1.0029 -4.8712 -2.8643 11 6 -0.3555 -4.4936 -3.4783 12 6 -0.3443 -5.8772 -4.1535 13 7 0.3042 -5.8818 -5.4672 14 6 -0.4392 -5.9999 -6.5852 15 8 -1.6449 -6.1018 -6.5038 16 6 0.2278 -6.0041 -7.9366 17 16 -1.0281 -6.1749 -9.2286 18 6 -0.0001 -6.1518 -10.6595 19 1 1.0703 -6.0533 -10.5539 20 6 -0.5657 -6.2601 -11.9224 21 7 -1.8702 -6.3806 -12.0511 22 14 0.5242 -6.2363 -13.4392 23 1 1.9435 -6.0930 -13.0267 24 1 0.3527 -7.5049 -14.1919 25 1 0.1428 -5.0916 -14.3049 26 6 0.5749 -6.3409 -3.0112 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 2.5416 -3.2082 0.5187 31 1 0.8626 -2.6172 0.5235 32 1 1.0385 -2.4250 -1.8928 33 1 1.8803 -5.0722 -0.9074 34 1 0.2017 -4.4804 -0.9029 35 1 1.8546 -4.6000 -3.4882 36 1 -1.1496 -4.3739 -2.7413 37 1 -0.3008 -3.6630 -4.1819 38 1 -1.3162 -6.3705 -4.1595 39 1 1.2685 -5.7999 -5.5323 40 1 0.7689 -5.0685 -8.0776 41 1 0.9255 -6.8396 -7.9947 42 1 -2.2656 -6.4559 -12.9336 43 1 1.3795 -6.9995 -3.3382 44 1 0.0356 -6.7272 -2.1462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733944197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:16 Heat of formation + Delta-G solvation = 71.738370 kcal Electronic energy + Delta-G solvation = -25472.495158 eV Core-core repulsion = 21556.023141 eV Total energy + Delta-G solvation = -3916.472016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.98297 -40.26391 -38.37427 -36.76016 -34.63420 -33.59093 -32.78400 -32.43970 -29.62880 -29.33008 -28.35599 -26.07651 -25.58448 -25.34234 -22.81134 -22.49424 -21.18704 -20.83189 -19.31932 -17.88342 -17.42524 -16.92133 -16.71791 -16.33663 -16.07000 -15.44516 -15.21273 -14.96135 -14.85780 -14.81522 -14.42806 -14.07444 -14.03670 -13.83735 -13.55379 -13.40890 -13.18493 -13.03872 -12.76151 -12.55247 -12.27466 -12.22264 -12.07053 -11.75280 -11.45672 -11.21665 -11.16487 -11.07974 -11.03291 -10.77049 -10.70460 -10.39994 -9.81489 -9.44533 -9.17975 -9.09048 -8.91227 -8.25250 -6.51676 -6.23201 -3.93756 0.02698 1.37869 2.13607 2.58895 2.99023 3.02838 3.20875 3.21332 3.27338 3.31881 3.58235 3.67468 4.05287 4.18837 4.19437 4.23805 4.31933 4.51865 4.55443 4.64747 4.65180 4.67730 4.86106 4.92634 5.05390 5.10731 5.12219 5.13645 5.22857 5.26495 5.39994 5.47149 5.55347 5.77672 5.77911 5.81062 5.87252 6.03338 6.12365 6.24130 6.41596 6.62910 6.67559 7.58773 7.67691 8.34203 8.57796 9.22444 10.84279 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015417 B = 0.001699 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.769661 B =16480.677180 C =17374.825014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.076 3.924 3 N -0.276 5.276 4 O 0.026 5.974 5 N -0.252 5.252 6 C 0.076 3.924 7 C 0.123 3.877 8 N -0.682 5.682 9 C 0.071 3.929 10 C -0.110 4.110 11 C -0.153 4.153 12 C 0.126 3.874 13 N -0.721 5.721 14 C 0.535 3.465 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.140 4.140 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.347 0.653 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.075 0.925 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.474 6.664 29.078 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 N -0.021 5.021 4 O -0.116 6.116 5 N 0.005 4.995 6 C -0.108 4.108 7 C -0.008 4.008 8 N -0.315 5.315 9 C -0.057 4.057 10 C -0.129 4.129 11 C -0.192 4.192 12 C 0.019 3.981 13 N -0.375 5.375 14 C 0.321 3.679 15 O -0.390 6.390 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.178 4.178 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.156 7.126 29.017 30.321 hybrid contribution 1.168 -0.002 -0.854 1.447 sum 6.325 7.124 28.163 29.731 Atomic orbital electron populations 1.20592 0.84149 1.05496 1.04936 1.24648 1.00373 0.89022 0.96605 1.79960 0.89188 1.19648 1.13311 1.93424 1.20140 1.13634 1.84365 1.79977 1.17600 0.91087 1.10833 1.24466 0.89903 0.98685 0.97749 1.20531 1.01065 0.86902 0.92253 1.60413 1.55609 1.04363 1.11105 1.22017 0.98533 0.88156 0.97014 1.22650 0.98456 0.96270 0.95478 1.23584 0.96729 0.98785 1.00133 1.21697 0.97711 0.96505 0.82175 1.45709 1.10334 1.76659 1.04771 1.20333 0.87455 0.74819 0.85276 1.90696 1.14199 1.47298 1.86842 1.23537 1.05468 1.05015 0.96435 1.85386 1.07560 1.95735 0.94697 1.22912 0.95097 1.58220 0.92093 0.90857 1.24998 0.95413 0.94531 0.98687 1.70023 1.09708 1.46475 1.24083 0.86112 0.80043 0.77911 0.81407 1.19605 1.20557 1.20560 1.23333 0.99852 0.95996 0.98656 0.88403 0.88782 0.89020 0.87853 0.91367 0.83449 0.90328 0.94230 0.88171 0.89532 0.90794 0.88008 0.76720 0.89192 0.89178 0.92230 0.90589 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.22 10.05 36.00 0.36 0.15 16 2 C 0.08 0.49 7.19 -82.38 -0.59 -0.10 16 3 N -0.28 -2.69 12.98 33.74 0.44 -2.26 16 4 O 0.03 0.30 13.71 12.03 0.16 0.47 16 5 N -0.25 -2.57 12.98 33.75 0.44 -2.13 16 6 C 0.08 0.52 6.70 -82.38 -0.55 -0.03 16 7 C 0.12 0.50 5.85 -4.97 -0.03 0.47 16 8 N -0.68 -3.46 6.49 -115.06 -0.75 -4.20 16 9 C 0.07 0.31 5.51 -3.82 -0.02 0.29 16 10 C -0.11 -0.66 3.77 -89.80 -0.34 -1.00 16 11 C -0.15 -1.19 7.44 -25.83 -0.19 -1.38 16 12 C 0.13 1.27 4.33 -67.03 -0.29 0.98 16 13 N -0.72 -8.90 5.26 -52.93 -0.28 -9.18 16 14 C 0.53 9.58 7.85 -10.98 -0.09 9.49 16 15 O -0.52 -11.35 15.46 5.56 0.09 -11.26 16 16 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 22 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.14 -0.92 7.39 -25.92 -0.19 -1.11 16 27 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.05 7.79 -51.93 -0.40 -0.35 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.10 7.79 -51.93 -0.40 -0.31 16 32 H 0.35 1.63 8.72 -39.29 -0.34 1.29 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.04 0.13 7.88 -51.93 -0.41 -0.28 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.55 7.92 -51.93 -0.41 0.14 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.25 7.46 -51.93 -0.39 0.86 16 39 H 0.40 3.89 8.70 -40.82 -0.36 3.53 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -36.55 392.52 -8.48 -45.03 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.48 Total: -1.64 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.51 Total: -7.94 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.58 Total: -43.06 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.25 Total: -10.79 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.55 -8.48 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733944197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.766 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds