Wall clock time and date at job start Sat Apr 11 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29953 * 125.30873 * 2 1 4 4 O 1.41871 * 107.41413 * 180.02562 * 3 2 1 5 5 N 1.41874 * 106.39345 * 359.97438 * 4 3 2 6 6 C 1.29954 * 107.41180 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.30624 * 180.26856 * 6 5 4 8 8 N 1.46905 * 109.46867 * 269.68946 * 7 6 5 9 9 C 1.46895 * 110.99686 * 180.02562 * 8 7 6 10 10 C 1.53007 * 109.46587 * 180.02562 * 9 8 7 11 11 C 1.53778 * 113.61366 * 274.13159 * 10 9 8 12 12 C 1.53955 * 87.01909 * 220.05197 * 11 10 9 13 13 N 1.46501 * 113.53799 * 270.81132 * 12 11 10 14 14 C 1.34774 * 120.00198 * 252.49529 * 13 12 11 15 15 O 1.21279 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99982 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.46852 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99939 * 180.02562 * 17 16 14 19 19 H 1.08011 * 119.99798 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00543 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99789 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00539 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46817 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47333 * 119.99769 * 22 20 18 25 25 H 1.48500 * 109.47163 * 240.00073 * 22 20 18 26 26 C 1.53778 * 87.11224 * 25.36398 * 12 11 10 27 27 H 1.09005 * 109.46814 * 270.00326 * 1 2 3 28 28 H 1.09002 * 109.46953 * 29.99891 * 1 2 3 29 29 H 1.08993 * 109.47670 * 149.99833 * 1 2 3 30 30 H 1.08996 * 109.46885 * 29.68731 * 7 6 5 31 31 H 1.08999 * 109.47444 * 149.69055 * 7 6 5 32 32 H 1.00899 * 110.99477 * 303.95474 * 8 7 6 33 33 H 1.08999 * 109.47318 * 299.99591 * 9 8 7 34 34 H 1.08992 * 109.47632 * 60.00045 * 9 8 7 35 35 H 1.09001 * 112.84990 * 45.33526 * 10 9 8 36 36 H 1.08995 * 113.61392 * 334.57287 * 11 10 9 37 37 H 1.09001 * 113.60995 * 105.47803 * 11 10 9 38 38 H 1.08997 * 113.74240 * 139.94646 * 12 11 10 39 39 H 0.96999 * 119.99575 * 72.49586 * 13 12 11 40 40 H 1.08997 * 109.47082 * 300.00618 * 16 14 13 41 41 H 1.08998 * 109.46593 * 60.00158 * 16 14 13 42 42 H 0.96996 * 120.00636 * 179.97438 * 21 20 18 43 43 H 1.08996 * 113.61477 * 220.08694 * 26 12 11 44 44 H 1.09002 * 113.61637 * 89.18644 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5710 -0.7937 -0.0003 6 6 2.3212 -1.1500 -0.0002 7 6 1.8208 -2.5715 0.0058 8 7 1.6528 -3.0373 -1.3772 9 6 1.1644 -4.4223 -1.4105 10 6 1.0029 -4.8712 -2.8643 11 6 -0.3555 -4.4936 -3.4783 12 6 -0.3443 -5.8772 -4.1535 13 7 0.3042 -5.8818 -5.4672 14 6 -0.4392 -5.9999 -6.5852 15 8 -1.6449 -6.1018 -6.5038 16 6 0.2278 -6.0041 -7.9366 17 16 -1.0281 -6.1749 -9.2286 18 6 -0.0001 -6.1518 -10.6595 19 1 1.0703 -6.0533 -10.5539 20 6 -0.5657 -6.2601 -11.9224 21 7 -1.8702 -6.3806 -12.0511 22 14 0.5242 -6.2363 -13.4392 23 1 1.9435 -6.0930 -13.0267 24 1 0.3527 -7.5049 -14.1919 25 1 0.1428 -5.0916 -14.3049 26 6 0.5749 -6.3409 -3.0112 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 2.5416 -3.2082 0.5187 31 1 0.8626 -2.6172 0.5235 32 1 1.0385 -2.4250 -1.8928 33 1 1.8803 -5.0722 -0.9074 34 1 0.2017 -4.4804 -0.9029 35 1 1.8546 -4.6000 -3.4882 36 1 -1.1496 -4.3739 -2.7413 37 1 -0.3008 -3.6630 -4.1819 38 1 -1.3162 -6.3705 -4.1595 39 1 1.2685 -5.7999 -5.5323 40 1 0.7689 -5.0685 -8.0776 41 1 0.9255 -6.8396 -7.9947 42 1 -2.2656 -6.4559 -12.9336 43 1 1.3795 -6.9995 -3.3382 44 1 0.0356 -6.7272 -2.1462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733944197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:15 Heat of formation + Delta-G solvation = 43.121595 kcal Electronic energy + Delta-G solvation = -25473.736074 eV Core-core repulsion = 21556.023141 eV Total energy + Delta-G solvation = -3917.712933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54800 -41.19208 -39.45258 -37.27302 -35.18859 -34.59675 -34.44499 -33.63056 -30.86047 -29.74554 -29.05849 -27.67143 -26.64384 -25.97996 -23.30201 -23.08050 -22.08893 -21.65172 -20.10073 -19.82164 -18.05236 -17.81058 -17.27482 -17.19529 -17.05048 -16.88296 -16.41204 -16.08392 -15.76432 -15.65352 -15.32608 -14.91114 -14.78235 -14.51527 -14.30906 -14.26199 -14.11517 -13.82703 -13.57124 -13.29208 -13.24503 -13.16231 -12.92032 -12.85413 -12.61133 -12.53791 -12.49529 -12.08970 -11.78452 -11.69921 -11.68597 -11.35220 -11.16230 -11.01367 -10.92170 -10.27781 -9.99217 -9.45841 -8.66654 -8.35365 -6.13031 -0.55932 0.89993 1.27193 1.40947 1.47060 1.49865 1.58300 1.61242 2.06183 2.25666 2.31197 2.74476 2.98809 3.20822 3.31984 3.60757 3.66334 3.79155 3.90456 3.93439 4.02631 4.06310 4.19235 4.30843 4.39306 4.50528 4.52102 4.59212 4.61028 4.68438 4.76707 4.83073 4.89220 4.96789 4.99199 5.08461 5.15218 5.25279 5.37448 5.41890 5.72255 5.83942 5.93283 6.19649 6.32962 6.53350 7.06254 7.27410 8.74046 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015417 B = 0.001699 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.769661 B =16480.677180 C =17374.825014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.093 3.907 3 N -0.311 5.311 4 O -0.023 6.023 5 N -0.287 5.287 6 C 0.092 3.908 7 C 0.125 3.875 8 N -0.698 5.698 9 C 0.077 3.923 10 C -0.097 4.097 11 C -0.145 4.145 12 C 0.100 3.900 13 N -0.696 5.696 14 C 0.537 3.463 15 O -0.565 6.565 16 C -0.131 4.131 17 S -0.149 6.149 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.910 5.910 22 Si 0.998 3.002 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.274 1.274 26 C -0.122 4.122 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.349 0.651 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.414 0.586 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.271 0.729 43 H 0.079 0.921 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 6.029 30.679 31.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 N -0.060 5.060 4 O -0.156 6.156 5 N -0.034 5.034 6 C -0.093 4.093 7 C -0.005 4.005 8 N -0.332 5.332 9 C -0.051 4.051 10 C -0.115 4.115 11 C -0.184 4.184 12 C -0.005 4.005 13 N -0.349 5.349 14 C 0.322 3.678 15 O -0.443 6.443 16 C -0.282 4.282 17 S 0.078 5.922 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.160 4.160 27 H 0.140 0.860 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.168 0.832 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.251 0.749 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.992 6.525 30.670 31.923 hybrid contribution 0.862 0.140 -1.220 1.500 sum 6.854 6.665 29.450 30.963 Atomic orbital electron populations 1.20898 0.80789 1.06789 1.06787 1.25377 1.02074 0.88015 0.93555 1.79930 0.88862 1.21235 1.15976 1.93389 1.21667 1.14565 1.85990 1.79933 1.19685 0.90619 1.13128 1.25075 0.89021 1.00202 0.94997 1.20733 1.02828 0.84705 0.92196 1.60347 1.56266 1.04839 1.11744 1.21968 0.99860 0.87679 0.95573 1.22500 0.96851 0.95551 0.96636 1.23570 0.98675 0.96214 0.99927 1.22056 0.97618 0.99039 0.81792 1.45461 1.10836 1.74254 1.04364 1.20017 0.86889 0.74930 0.85917 1.90682 1.16137 1.50110 1.87402 1.23384 1.03255 1.06621 0.94977 1.85537 1.12464 1.96120 0.98106 1.23240 0.95417 1.58145 0.92603 0.90005 1.26121 0.96924 0.93780 1.02359 1.70181 1.11882 1.47573 1.25066 0.84911 0.78335 0.78113 0.76625 1.18128 1.19872 1.19935 1.23292 0.98922 0.96501 0.97310 0.85978 0.88793 0.86390 0.87613 0.87489 0.83226 0.89697 0.92046 0.89214 0.87491 0.92584 0.90502 0.74893 0.87444 0.87315 0.91977 0.90273 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.12 10.05 71.24 0.72 0.60 16 2 C 0.09 1.06 7.19 43.49 0.31 1.37 16 3 N -0.31 -6.18 12.98 -47.15 -0.61 -6.79 16 4 O -0.02 -0.58 13.71 70.18 0.96 0.38 16 5 N -0.29 -5.91 12.98 -47.15 -0.61 -6.52 16 6 C 0.09 1.12 6.70 43.49 0.29 1.41 16 7 C 0.13 0.56 5.85 85.56 0.50 1.06 16 8 N -0.70 -4.60 6.49 -517.93 -3.36 -7.96 16 9 C 0.08 0.33 5.51 86.31 0.48 0.81 16 10 C -0.10 -0.84 3.77 -10.27 -0.04 -0.87 16 11 C -0.15 -1.88 7.44 31.18 0.23 -1.65 16 12 C 0.10 1.86 4.33 45.58 0.20 2.06 16 13 N -0.70 -16.25 5.26 -439.76 -2.31 -18.56 16 14 C 0.54 19.15 7.85 87.66 0.69 19.84 16 15 O -0.57 -25.52 15.46 -3.03 -0.05 -25.56 16 16 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 17 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 18 C -0.55 -31.15 9.50 67.95 0.65 -30.51 16 19 H 0.08 4.35 7.80 -2.90 -0.02 4.33 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -55.77 13.22 21.65 0.29 -55.48 16 22 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 C -0.12 -1.19 7.39 31.12 0.23 -0.96 16 27 H 0.12 -0.34 8.14 -2.38 -0.02 -0.36 16 28 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.12 -0.43 7.79 -2.39 -0.02 -0.45 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 -0.29 7.79 -2.39 -0.02 -0.31 16 32 H 0.35 2.05 8.72 -89.69 -0.78 1.27 16 33 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.06 0.05 7.88 -2.39 -0.02 0.03 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.98 7.92 -2.39 -0.02 0.96 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.86 7.46 -2.39 -0.02 1.84 16 39 H 0.41 7.16 8.70 -92.71 -0.81 6.35 16 40 H 0.11 3.80 8.14 -2.40 -0.02 3.79 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.81 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.12 0.70 8.10 -2.39 -0.02 0.68 16 Total: -1.00 -85.81 392.52 -0.23 -86.04 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -0.55 Total: 8.57 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.15 Total: -10.33 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -6.61 Total: -95.32 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.92 Total: -25.18 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -85.81 -0.23 -86.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733944197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.163 kcal (2) G-P(sol) polarization free energy of solvation -85.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds