Wall clock time and date at job start Sat Apr 11 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29956 * 125.29907 * 2 1 4 4 O 1.41880 * 107.41201 * 179.97438 * 3 2 1 5 5 N 1.41879 * 106.38691 * 359.78171 * 4 3 2 6 6 C 1.29960 * 107.41441 * 0.36480 * 5 4 3 7 7 C 1.50697 * 125.30303 * 179.88811 * 6 5 4 8 8 N 1.46893 * 109.47311 * 269.70004 * 7 6 5 9 9 C 1.47486 * 110.99866 * 170.00074 * 8 7 6 10 10 C 1.53506 * 87.93221 * 221.29388 * 9 8 7 11 11 C 1.53003 * 114.17233 * 139.67021 * 10 9 8 12 12 H 1.08999 * 109.46822 * 300.00719 * 11 10 9 13 13 C 1.53003 * 109.46884 * 60.00139 * 11 10 9 14 14 N 1.46498 * 109.47368 * 180.02562 * 11 10 9 15 15 C 1.34771 * 119.99818 * 154.99942 * 14 11 10 16 16 O 1.21282 * 120.00430 * 359.97438 * 15 14 11 17 17 C 1.50707 * 119.99835 * 180.02562 * 15 14 11 18 18 S 1.81005 * 109.46910 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99824 * 180.02562 * 18 17 15 20 20 H 1.08010 * 120.00226 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00271 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99875 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00387 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46776 * 60.00302 * 23 21 19 25 25 H 1.48498 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47281 * 300.00470 * 23 21 19 27 27 C 1.47474 * 111.00100 * 74.03236 * 8 7 6 28 28 H 1.09003 * 109.46881 * 269.99736 * 1 2 3 29 29 H 1.08995 * 109.47383 * 30.00117 * 1 2 3 30 30 H 1.09004 * 109.46623 * 150.00237 * 1 2 3 31 31 H 1.09003 * 109.46692 * 149.69459 * 7 6 5 32 32 H 1.09004 * 109.46773 * 29.70433 * 7 6 5 33 33 H 1.09000 * 113.47378 * 336.06597 * 9 8 7 34 34 H 1.08999 * 113.47621 * 106.52788 * 9 8 7 35 35 H 1.09003 * 114.17533 * 272.37734 * 10 9 8 36 36 H 1.09001 * 109.46829 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.46543 * 300.00030 * 13 11 10 38 38 H 1.08996 * 109.47125 * 60.00155 * 13 11 10 39 39 H 0.96995 * 119.99882 * 335.00468 * 14 11 10 40 40 H 1.08996 * 109.46949 * 299.99821 * 17 15 14 41 41 H 1.08992 * 109.47138 * 60.00371 * 17 15 14 42 42 H 0.97001 * 120.00294 * 179.97438 * 22 21 19 43 43 H 1.09008 * 113.47506 * 253.46575 * 27 8 7 44 44 H 1.09002 * 113.47878 * 23.87025 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6082 0.6249 0.0006 5 7 3.5711 -0.7934 0.0061 6 6 2.3213 -1.1498 0.0006 7 6 1.8211 -2.5713 0.0012 8 7 1.6586 -3.0338 -1.3835 9 6 1.4013 -4.4853 -1.4291 10 6 2.3471 -4.5588 -2.6360 11 6 3.2691 -5.7799 -2.6360 12 1 3.8919 -5.7648 -1.7416 13 6 2.4252 -7.0561 -2.6483 14 7 4.1230 -5.7470 -3.8259 15 6 5.3130 -6.3796 -3.8189 16 8 5.6772 -6.9757 -2.8275 17 6 6.1918 -6.3454 -5.0428 18 16 7.7087 -7.2796 -4.7227 19 6 8.5244 -7.0784 -6.2715 20 1 8.0546 -6.5080 -7.0593 21 6 9.7707 -7.6529 -6.4793 22 7 10.3430 -8.3484 -5.5194 23 14 10.6352 -7.4402 -8.1214 24 1 10.8589 -5.9950 -8.3795 25 1 11.9421 -8.1445 -8.0877 26 1 9.7923 -8.0113 -9.2023 27 6 2.9673 -3.3029 -2.0078 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 0.8609 -2.6183 0.5151 32 1 2.5400 -3.2092 0.5155 33 1 1.7714 -5.0196 -0.5541 34 1 0.3684 -4.7358 -1.6710 35 1 1.8606 -4.3842 -3.5957 36 1 3.0821 -7.9259 -2.6478 37 1 1.7902 -7.0802 -1.7626 38 1 1.8023 -7.0712 -3.5426 39 1 3.8320 -5.2699 -4.6187 40 1 5.6611 -6.7919 -5.8837 41 1 6.4443 -5.3120 -5.2799 42 1 11.2139 -8.7502 -5.6647 43 1 3.2617 -2.5512 -2.7403 44 1 3.7557 -3.5206 -1.2872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734109158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:26 Heat of formation + Delta-G solvation = 88.720845 kcal Electronic energy + Delta-G solvation = -26252.159720 eV Core-core repulsion = 22336.424119 eV Total energy + Delta-G solvation = -3915.735601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99000 -40.86423 -39.06562 -35.63171 -34.71132 -33.68275 -32.42689 -31.64138 -29.94057 -29.18332 -28.51578 -26.47963 -25.69306 -25.47089 -23.01290 -22.19255 -20.91220 -20.49871 -19.88977 -17.88339 -17.33819 -16.96118 -16.72446 -16.35109 -15.92272 -15.38954 -15.29736 -14.92989 -14.80345 -14.71541 -14.33601 -13.99226 -13.90573 -13.52285 -13.28755 -13.22882 -13.10619 -12.86184 -12.72781 -12.51039 -12.22183 -12.11759 -11.98372 -11.79961 -11.62409 -11.17128 -11.05885 -11.04557 -11.03582 -10.98115 -10.89484 -10.75340 -9.82498 -9.63237 -9.38677 -9.06149 -8.90771 -8.24294 -6.49940 -6.21328 -3.91987 0.11827 1.49031 2.22936 2.68243 2.99189 3.07755 3.23895 3.27337 3.30184 3.34474 3.45211 3.64042 3.94255 4.15921 4.20841 4.23725 4.37329 4.57856 4.70416 4.75249 4.81464 4.81685 4.88743 4.92249 5.11158 5.13689 5.14225 5.16337 5.18707 5.28102 5.36310 5.39874 5.49791 5.57279 5.65560 5.67664 5.88575 5.97683 6.13371 6.15623 6.31543 6.51968 6.63672 7.59469 7.69234 8.35213 8.60090 9.23894 10.86018 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002031 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.546303 B =13783.406693 C =14940.710231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.088 3.912 3 N -0.281 5.281 4 O 0.027 5.973 5 N -0.263 5.263 6 C 0.082 3.918 7 C 0.081 3.919 8 N -0.467 5.467 9 C 0.013 3.987 10 C -0.119 4.119 11 C 0.155 3.845 12 H 0.087 0.913 13 C -0.163 4.163 14 N -0.734 5.734 15 C 0.534 3.466 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.001 3.999 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.087 0.913 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.691 12.212 10.379 31.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 N -0.027 5.027 4 O -0.114 6.114 5 N -0.006 5.006 6 C -0.102 4.102 7 C -0.049 4.049 8 N -0.190 5.190 9 C -0.116 4.116 10 C -0.139 4.139 11 C 0.049 3.951 12 H 0.105 0.895 13 C -0.221 4.221 14 N -0.388 5.388 15 C 0.320 3.680 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.128 4.128 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.187 12.449 11.860 30.496 hybrid contribution 0.084 0.264 -2.136 2.154 sum -25.103 12.713 9.724 29.772 Atomic orbital electron populations 1.20595 0.84097 1.05736 1.04613 1.24568 1.00408 0.88685 0.95836 1.79949 0.89154 1.19725 1.13869 1.93426 1.20176 1.13309 1.84495 1.80001 1.17552 0.91509 1.11555 1.24351 0.89812 0.98760 0.97284 1.21362 1.02481 0.87322 0.93706 1.69062 1.21447 1.16190 1.12346 1.23850 1.01566 0.88102 0.98084 1.23006 0.96873 0.94386 0.99588 1.20834 0.90822 0.93399 0.90059 0.89468 1.22162 1.00014 0.98129 1.01798 1.46046 1.19596 1.56590 1.16541 1.20305 0.80619 0.77635 0.89437 1.90697 1.72399 1.41580 1.34497 1.23536 1.02786 1.06004 0.98130 1.85380 1.10566 1.66162 1.21240 1.22825 1.06349 1.39415 0.99831 0.90991 1.24991 0.96261 0.94512 0.97828 1.70005 1.16227 1.31859 1.32203 0.86224 0.78502 0.78509 0.82274 1.19936 1.20813 1.19938 1.24026 0.91791 0.97677 0.99296 0.88723 0.89220 0.88153 0.86914 0.90566 0.90236 0.88543 0.87189 0.91521 0.91908 0.92363 0.76833 0.89251 0.89263 0.92131 0.89460 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.29 10.05 36.01 0.36 0.07 16 2 C 0.09 0.68 7.19 -82.38 -0.59 0.08 16 3 N -0.28 -3.06 12.98 33.74 0.44 -2.62 16 4 O 0.03 0.35 13.71 12.02 0.16 0.52 16 5 N -0.26 -3.07 12.98 33.74 0.44 -2.63 16 6 C 0.08 0.68 6.33 -82.38 -0.52 0.16 16 7 C 0.08 0.44 4.99 -4.98 -0.02 0.42 16 8 N -0.47 -2.92 6.40 -246.10 -1.58 -4.50 16 9 C 0.01 0.06 6.36 -7.55 -0.05 0.02 16 10 C -0.12 -0.82 3.64 -90.09 -0.33 -1.15 16 11 C 0.15 1.54 2.47 -67.93 -0.17 1.38 16 12 H 0.09 1.06 7.33 -51.93 -0.38 0.68 16 13 C -0.16 -1.51 9.29 37.16 0.35 -1.16 16 14 N -0.73 -8.98 5.08 -53.80 -0.27 -9.25 16 15 C 0.53 9.56 7.81 -10.98 -0.09 9.47 16 16 O -0.52 -11.33 15.52 5.56 0.09 -11.24 16 17 C -0.15 -3.06 6.16 36.01 0.22 -2.83 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 C 0.00 0.01 6.87 -7.55 -0.05 -0.05 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.19 7.78 -51.93 -0.40 -0.21 16 31 H 0.11 0.28 7.78 -51.93 -0.40 -0.12 16 32 H 0.08 0.43 7.56 -51.93 -0.39 0.04 16 33 H 0.08 0.36 7.73 -51.93 -0.40 -0.04 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.44 7.48 -51.93 -0.39 0.05 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 40 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.08 0.77 7.50 -51.93 -0.39 0.38 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -36.56 388.65 -8.52 -45.08 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -6.46 Total: -1.77 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.69 Total: -6.58 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.24 Total: -44.49 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.25 Total: -10.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.56 -8.52 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734109158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.806 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds