Wall clock time and date at job start Sat Apr 11 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46509 * 299.99038 * 3 2 1 6 6 H 1.48493 * 109.47320 * 59.99175 * 3 2 1 7 7 C 1.38800 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00525 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00123 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47239 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00344 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00162 * 180.02562 * 13 11 10 15 15 H 1.09004 * 110.43178 * 323.91173 * 14 13 11 16 16 C 1.54263 * 110.48911 * 86.45450 * 14 13 11 17 17 C 1.53870 * 106.60156 * 142.42041 * 16 14 13 18 18 C 1.54274 * 106.59595 * 0.02562 * 17 16 14 19 19 H 1.08999 * 110.48060 * 95.20142 * 18 17 16 20 20 C 1.52993 * 110.48404 * 217.70968 * 18 17 16 21 21 N 1.46906 * 109.47378 * 293.54689 * 20 18 17 22 22 C 1.46898 * 110.99888 * 180.02562 * 21 20 18 23 23 C 1.50704 * 109.47041 * 179.97438 * 22 21 20 24 24 C 1.40894 * 125.30074 * 94.71770 * 23 22 21 25 25 N 1.29954 * 109.39098 * 179.80139 * 24 23 22 26 26 O 1.41875 * 107.41280 * 0.44606 * 25 24 23 27 27 N 1.29947 * 125.30812 * 275.02454 * 23 22 21 28 28 C 1.54886 * 110.59742 * 201.29685 * 14 13 11 29 29 H 0.96994 * 120.00085 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46779 * 59.99875 * 10 9 7 31 31 H 1.09005 * 109.46917 * 300.00182 * 10 9 7 32 32 H 0.97003 * 119.99706 * 359.97438 * 13 11 10 33 33 H 1.09001 * 110.02906 * 23.13555 * 16 14 13 34 34 H 1.09006 * 110.07362 * 261.73141 * 16 14 13 35 35 H 1.08994 * 110.03191 * 240.71887 * 17 16 14 36 36 H 1.08995 * 110.07309 * 119.30804 * 17 16 14 37 37 H 1.09004 * 109.46862 * 173.54792 * 20 18 17 38 38 H 1.09000 * 109.47250 * 53.54815 * 20 18 17 39 39 H 1.00901 * 111.00013 * 303.95621 * 21 20 18 40 40 H 1.08997 * 109.47334 * 299.99788 * 22 21 20 41 41 H 1.08995 * 109.47296 * 60.00089 * 22 21 20 42 42 H 1.08002 * 125.31009 * 0.02562 * 24 23 22 43 43 H 1.09001 * 110.75839 * 85.00911 * 28 14 13 44 44 H 1.09000 * 110.75604 * 321.63484 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2127 6 1 1.8914 2.3966 1.2123 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 -0.0010 13 7 2.8442 -6.3431 -0.0007 14 6 2.3305 -7.7151 -0.0019 15 1 1.4239 -7.7825 0.5995 16 6 2.0578 -8.1883 -1.4446 17 6 2.4604 -9.6722 -1.5041 18 6 2.9632 -10.0491 -0.0951 19 1 2.1592 -10.4957 0.4899 20 6 4.1514 -11.0083 -0.1895 21 7 3.7034 -12.2892 -0.7522 22 6 4.8203 -13.2374 -0.8572 23 6 4.3233 -14.5369 -1.4365 24 6 4.3687 -14.8909 -2.7995 25 7 3.8631 -16.0780 -2.9540 26 8 3.4568 -16.5363 -1.6743 27 7 3.7809 -15.5031 -0.7577 28 6 3.4044 -8.6994 0.5241 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7313 0.8905 31 1 3.1245 -3.7313 -0.8895 32 1 3.8010 -6.1834 -0.0012 33 1 2.6582 -7.6101 -2.1470 34 1 0.9992 -8.0788 -1.6805 35 1 3.2562 -9.8141 -2.2352 36 1 1.5976 -10.2836 -1.7682 37 1 4.5650 -11.1733 0.8055 38 1 4.9169 -10.5761 -0.8341 39 1 2.9485 -12.6790 -0.2079 40 1 5.5907 -12.8210 -1.5062 41 1 5.2382 -13.4179 0.1331 42 1 4.7655 -14.2736 -3.5919 43 1 3.3830 -8.7489 1.6128 44 1 4.3952 -8.4164 0.1686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734467368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:42 Heat of formation + Delta-G solvation = 45.080271 kcal Electronic energy + Delta-G solvation = -25287.823990 eV Core-core repulsion = 21370.195992 eV Total energy + Delta-G solvation = -3917.627998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96158 -39.79343 -38.35784 -36.67259 -34.20559 -33.43148 -32.95011 -32.43817 -30.23111 -29.39190 -28.06324 -26.44918 -25.46744 -24.11495 -23.47912 -21.70285 -20.95037 -20.76898 -19.69914 -17.90157 -17.83849 -16.75018 -16.57423 -16.47618 -16.15273 -15.72609 -15.40217 -15.16375 -15.05172 -14.81529 -14.73773 -14.12316 -13.90191 -13.63937 -13.14825 -13.11263 -12.76867 -12.60455 -12.43122 -12.36987 -12.30563 -12.03521 -11.73773 -11.56877 -11.47566 -11.26165 -11.15511 -11.08073 -11.02967 -10.96790 -10.76121 -10.54745 -9.81182 -9.38667 -9.22023 -9.08698 -8.85946 -8.23740 -6.50738 -6.22743 -3.93174 -0.05989 1.37723 2.07182 2.57548 3.02238 3.09239 3.20576 3.25396 3.28561 3.32719 3.54447 3.75058 4.10521 4.19356 4.22964 4.31853 4.37799 4.54686 4.64201 4.82434 4.89987 4.90259 4.96706 5.10620 5.12590 5.17858 5.22404 5.29498 5.39547 5.42984 5.55949 5.62483 5.66265 5.88167 5.95685 5.99259 6.12081 6.13693 6.20478 6.21485 6.30715 6.54840 6.70581 7.58851 7.72726 8.34404 8.62992 9.22769 10.84759 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.044825 B = 0.001403 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.498401 B =19959.012163 C =20072.719158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.733 5.733 14 C 0.144 3.856 15 H 0.091 0.909 16 C -0.140 4.140 17 C -0.103 4.103 18 C -0.089 4.089 19 H 0.078 0.922 20 C 0.068 3.932 21 N -0.682 5.682 22 C 0.123 3.877 23 C 0.078 3.922 24 C 0.064 3.936 25 N -0.273 5.273 26 O 0.025 5.975 27 N -0.270 5.270 28 C -0.123 4.123 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.349 0.651 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.215 0.785 43 H 0.073 0.927 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.499 -27.506 -2.567 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.387 5.387 14 C 0.039 3.961 15 H 0.109 0.891 16 C -0.179 4.179 17 C -0.141 4.141 18 C -0.108 4.108 19 H 0.096 0.904 20 C -0.060 4.060 21 N -0.315 5.315 22 C -0.008 4.008 23 C -0.105 4.105 24 C -0.139 4.139 25 N -0.016 5.016 26 O -0.117 6.117 27 N -0.014 5.014 28 C -0.162 4.162 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.167 0.833 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.231 0.769 43 H 0.091 0.909 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.759 -28.806 -2.903 31.248 hybrid contribution 2.867 1.827 0.643 3.459 sum 14.625 -26.979 -2.260 30.771 Atomic orbital electron populations 1.70023 1.05957 1.27350 1.46942 1.24990 0.95014 0.99025 0.94539 0.86121 0.79577 0.81909 0.77910 1.19628 1.20561 1.20570 1.22911 0.94934 0.91669 1.58842 0.90894 1.85408 1.04978 0.96345 1.96707 1.23535 1.06537 0.95520 1.04851 1.20315 0.86599 0.86308 0.74974 1.90699 1.15387 1.85577 1.47426 1.46054 1.09728 1.05243 1.77661 1.21703 0.97345 0.80610 0.96454 0.89084 1.22619 1.02450 0.95796 0.97050 1.22021 1.01078 0.95179 0.95859 1.21925 0.97007 0.94249 0.97650 0.90375 1.22072 0.97616 0.88490 0.97846 1.60484 1.09212 1.03816 1.58001 1.20563 0.94270 0.85078 1.00857 1.24629 0.96458 0.97500 0.91941 1.26085 0.96721 0.93596 0.97478 1.79974 1.09424 1.10925 1.01300 1.93432 1.73500 1.35299 1.09461 1.79939 1.10354 0.97124 1.14013 1.22750 0.98885 0.93932 1.00594 0.92231 0.89289 0.89286 0.76914 0.91380 0.91205 0.91372 0.91683 0.94469 0.90069 0.83305 0.87251 0.91901 0.76853 0.90866 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 11 C 0.53 9.61 7.84 -10.99 -0.09 9.53 16 12 O -0.52 -11.51 15.57 5.56 0.09 -11.43 16 13 N -0.73 -9.12 5.12 -52.20 -0.27 -9.39 16 14 C 0.14 1.54 3.15 -66.28 -0.21 1.33 16 15 H 0.09 1.18 7.67 -51.93 -0.40 0.79 16 16 C -0.14 -1.43 6.53 -25.62 -0.17 -1.60 16 17 C -0.10 -0.74 6.18 -25.61 -0.16 -0.90 16 18 C -0.09 -0.50 3.05 -88.95 -0.27 -0.78 16 19 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 20 C 0.07 0.26 5.00 -3.82 -0.02 0.24 16 21 N -0.68 -2.64 6.29 -115.06 -0.72 -3.37 16 22 C 0.12 0.32 6.23 -4.97 -0.03 0.29 16 23 C 0.08 0.39 6.70 -82.38 -0.55 -0.16 16 24 C 0.06 0.28 11.90 -17.34 -0.21 0.08 16 25 N -0.27 -2.19 12.98 30.70 0.40 -1.79 16 26 O 0.02 0.25 13.71 12.03 0.16 0.41 16 27 N -0.27 -2.20 12.98 33.74 0.44 -1.76 16 28 C -0.12 -0.82 5.92 -24.73 -0.15 -0.97 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 32 H 0.40 3.73 8.54 -40.82 -0.35 3.38 16 33 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.45 7.77 -51.93 -0.40 0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.08 0.27 8.05 -51.93 -0.42 -0.15 16 39 H 0.35 1.58 8.72 -39.29 -0.34 1.24 16 40 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 42 H 0.22 0.03 8.06 -52.49 -0.42 -0.39 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.42 7.95 -51.93 -0.41 0.00 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -36.20 389.18 -8.48 -44.68 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.51 Total: -1.66 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.43 Total: -8.61 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.58 Total: -41.61 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.25 Total: -11.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.20 -8.48 -44.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734467368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.765 kcal (2) G-P(sol) polarization free energy of solvation -36.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds