Wall clock time and date at job start Sat Apr 11 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46509 * 299.99038 * 3 2 1 6 6 H 1.48493 * 109.47320 * 59.99175 * 3 2 1 7 7 C 1.38800 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00525 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00123 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47239 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00344 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00162 * 180.02562 * 13 11 10 15 15 H 1.09004 * 110.43178 * 323.91173 * 14 13 11 16 16 C 1.54263 * 110.48911 * 86.45450 * 14 13 11 17 17 C 1.53870 * 106.60156 * 142.42041 * 16 14 13 18 18 C 1.54274 * 106.59595 * 0.02562 * 17 16 14 19 19 H 1.08999 * 110.48060 * 95.20142 * 18 17 16 20 20 C 1.52993 * 110.48404 * 217.70968 * 18 17 16 21 21 N 1.46906 * 109.47378 * 293.54689 * 20 18 17 22 22 C 1.46898 * 110.99888 * 180.02562 * 21 20 18 23 23 C 1.50704 * 109.47041 * 179.97438 * 22 21 20 24 24 C 1.40894 * 125.30074 * 94.71770 * 23 22 21 25 25 N 1.29954 * 109.39098 * 179.80139 * 24 23 22 26 26 O 1.41875 * 107.41280 * 0.44606 * 25 24 23 27 27 N 1.29947 * 125.30812 * 275.02454 * 23 22 21 28 28 C 1.54886 * 110.59742 * 201.29685 * 14 13 11 29 29 H 0.96994 * 120.00085 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46779 * 59.99875 * 10 9 7 31 31 H 1.09005 * 109.46917 * 300.00182 * 10 9 7 32 32 H 0.97003 * 119.99706 * 359.97438 * 13 11 10 33 33 H 1.09001 * 110.02906 * 23.13555 * 16 14 13 34 34 H 1.09006 * 110.07362 * 261.73141 * 16 14 13 35 35 H 1.08994 * 110.03191 * 240.71887 * 17 16 14 36 36 H 1.08995 * 110.07309 * 119.30804 * 17 16 14 37 37 H 1.09004 * 109.46862 * 173.54792 * 20 18 17 38 38 H 1.09000 * 109.47250 * 53.54815 * 20 18 17 39 39 H 1.00901 * 111.00013 * 303.95621 * 21 20 18 40 40 H 1.08997 * 109.47334 * 299.99788 * 22 21 20 41 41 H 1.08995 * 109.47296 * 60.00089 * 22 21 20 42 42 H 1.08002 * 125.31009 * 0.02562 * 24 23 22 43 43 H 1.09001 * 110.75839 * 85.00911 * 28 14 13 44 44 H 1.09000 * 110.75604 * 321.63484 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2127 6 1 1.8914 2.3966 1.2123 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 -0.0010 13 7 2.8442 -6.3431 -0.0007 14 6 2.3305 -7.7151 -0.0019 15 1 1.4239 -7.7825 0.5995 16 6 2.0578 -8.1883 -1.4446 17 6 2.4604 -9.6722 -1.5041 18 6 2.9632 -10.0491 -0.0951 19 1 2.1592 -10.4957 0.4899 20 6 4.1514 -11.0083 -0.1895 21 7 3.7034 -12.2892 -0.7522 22 6 4.8203 -13.2374 -0.8572 23 6 4.3233 -14.5369 -1.4365 24 6 4.3687 -14.8909 -2.7995 25 7 3.8631 -16.0780 -2.9540 26 8 3.4568 -16.5363 -1.6743 27 7 3.7809 -15.5031 -0.7577 28 6 3.4044 -8.6994 0.5241 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7313 0.8905 31 1 3.1245 -3.7313 -0.8895 32 1 3.8010 -6.1834 -0.0012 33 1 2.6582 -7.6101 -2.1470 34 1 0.9992 -8.0788 -1.6805 35 1 3.2562 -9.8141 -2.2352 36 1 1.5976 -10.2836 -1.7682 37 1 4.5650 -11.1733 0.8055 38 1 4.9169 -10.5761 -0.8341 39 1 2.9485 -12.6790 -0.2079 40 1 5.5907 -12.8210 -1.5062 41 1 5.2382 -13.4179 0.1331 42 1 4.7655 -14.2736 -3.5919 43 1 3.3830 -8.7489 1.6128 44 1 4.3952 -8.4164 0.1686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734467368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:42 Heat of formation + Delta-G solvation = 16.858268 kcal Electronic energy + Delta-G solvation = -25289.047788 eV Core-core repulsion = 21370.195992 eV Total energy + Delta-G solvation = -3918.851796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39369 -40.89807 -39.22936 -37.18925 -35.03494 -34.57668 -34.07797 -33.54749 -31.26624 -30.28594 -28.82167 -27.67636 -26.99092 -24.56610 -23.83623 -22.17238 -22.05168 -21.51666 -20.48798 -19.79395 -18.29712 -17.84602 -17.40908 -17.14943 -16.87779 -16.86979 -16.39363 -16.22180 -15.89248 -15.73366 -15.46246 -15.40943 -14.84010 -14.52099 -14.42251 -14.23762 -13.67477 -13.35157 -13.15156 -13.11901 -13.02813 -12.91173 -12.81854 -12.66173 -12.57416 -12.47182 -12.23145 -12.07494 -11.85402 -11.72347 -11.65977 -11.52309 -11.24591 -11.15206 -10.89906 -10.25520 -10.02548 -9.45321 -8.65878 -8.34023 -6.12062 -0.49874 1.04185 1.28743 1.42225 1.48859 1.55958 1.59655 1.64933 2.16827 2.27285 2.33861 2.93646 3.00400 3.26696 3.34455 3.62170 3.75225 3.86256 3.96863 4.07080 4.12091 4.29956 4.33880 4.44115 4.50532 4.52375 4.54090 4.61176 4.63462 4.69767 4.73102 4.78695 4.92766 4.98759 5.09147 5.24550 5.29095 5.38775 5.42932 5.58892 5.65703 5.86361 5.92100 6.20833 6.24225 6.58205 7.07510 7.31554 8.75494 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.044825 B = 0.001403 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.498401 B =19959.012163 C =20072.719158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.705 5.705 14 C 0.136 3.864 15 H 0.061 0.939 16 C -0.139 4.139 17 C -0.093 4.093 18 C -0.083 4.083 19 H 0.071 0.929 20 C 0.076 3.924 21 N -0.689 5.689 22 C 0.125 3.875 23 C 0.094 3.906 24 C 0.086 3.914 25 N -0.307 5.307 26 O -0.027 6.027 27 N -0.301 5.301 28 C -0.109 4.109 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.342 0.658 40 H 0.143 0.857 41 H 0.069 0.931 42 H 0.261 0.739 43 H 0.079 0.921 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.642 -27.222 -2.931 33.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.358 5.358 14 C 0.031 3.969 15 H 0.079 0.921 16 C -0.178 4.178 17 C -0.131 4.131 18 C -0.102 4.102 19 H 0.089 0.911 20 C -0.053 4.053 21 N -0.322 5.322 22 C -0.004 4.004 23 C -0.090 4.090 24 C -0.117 4.117 25 N -0.054 5.054 26 O -0.159 6.159 27 N -0.048 5.048 28 C -0.147 4.147 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.255 0.745 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.087 0.913 42 H 0.276 0.724 43 H 0.098 0.902 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.942 -28.612 -3.252 32.915 hybrid contribution 1.630 1.719 0.729 2.478 sum 17.572 -26.893 -2.524 32.224 Atomic orbital electron populations 1.70191 1.08030 1.28527 1.48138 1.26132 0.95939 1.03344 0.93744 0.84900 0.78675 0.76307 0.78027 1.17882 1.19992 1.20009 1.23245 0.95369 0.91958 1.58703 0.89817 1.85618 1.10823 0.99385 1.97048 1.23378 1.03418 0.94432 1.06795 1.20099 0.86325 0.86796 0.74972 1.90690 1.17624 1.86117 1.50252 1.45803 1.10117 1.04807 1.75121 1.21897 0.98065 0.80165 0.96784 0.92061 1.22580 1.00487 0.98287 0.96475 1.21943 1.01318 0.92414 0.97418 1.21862 0.97888 0.94298 0.96175 0.91065 1.22002 0.96590 0.87746 0.98922 1.60498 1.09521 1.04134 1.58002 1.20791 0.94241 0.83544 1.01857 1.25166 0.94248 0.97503 0.92075 1.26863 0.94085 0.92502 0.98245 1.79944 1.11605 1.12963 1.00885 1.93408 1.75166 1.36944 1.10397 1.79908 1.12277 0.97976 1.14674 1.22703 0.98330 0.92712 1.00985 0.92030 0.87164 0.87199 0.74543 0.91514 0.94430 0.89717 0.92467 0.93444 0.88374 0.84018 0.83907 0.91346 0.72356 0.90223 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -30.86 9.50 67.95 0.65 -30.21 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.13 -4.98 6.16 71.23 0.44 -4.54 16 11 C 0.53 19.12 7.84 87.66 0.69 19.81 16 12 O -0.57 -26.31 15.57 -3.03 -0.05 -26.36 16 13 N -0.71 -16.30 5.12 -437.46 -2.24 -18.54 16 14 C 0.14 2.75 3.15 46.06 0.15 2.89 16 15 H 0.06 1.64 7.67 -2.38 -0.02 1.62 16 16 C -0.14 -2.75 6.53 31.32 0.20 -2.55 16 17 C -0.09 -1.13 6.18 31.32 0.19 -0.94 16 18 C -0.08 -0.70 3.05 -9.71 -0.03 -0.73 16 19 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 20 C 0.08 0.23 5.00 86.30 0.43 0.67 16 21 N -0.69 -2.91 6.29 -517.93 -3.26 -6.17 16 22 C 0.13 0.16 6.23 85.56 0.53 0.70 16 23 C 0.09 0.73 6.70 43.49 0.29 1.02 16 24 C 0.09 0.55 11.90 85.62 1.02 1.57 16 25 N -0.31 -4.82 12.98 -56.80 -0.74 -5.56 16 26 O -0.03 -0.55 13.71 70.18 0.96 0.41 16 27 N -0.30 -4.84 12.98 -47.16 -0.61 -5.45 16 28 C -0.11 -1.09 5.92 31.89 0.19 -0.90 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 31 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 32 H 0.42 6.37 8.54 -92.71 -0.79 5.58 16 33 H 0.07 1.33 8.04 -2.39 -0.02 1.31 16 34 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.08 0.80 7.77 -2.39 -0.02 0.78 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.10 8.14 -2.38 -0.02 0.08 16 38 H 0.10 0.05 8.05 -2.39 -0.02 0.03 16 39 H 0.34 2.33 8.72 -89.69 -0.78 1.54 16 40 H 0.14 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.26 -1.13 8.06 -2.91 -0.02 -1.15 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.10 0.57 7.95 -2.39 -0.02 0.55 16 Total: -1.00 -85.64 389.18 -0.11 -85.75 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -0.54 Total: 8.19 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 5.22 Total: -12.00 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -6.56 Total: -91.38 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: 0.92 Total: -25.95 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -85.64 -0.11 -85.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734467368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.604 kcal (2) G-P(sol) polarization free energy of solvation -85.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds