Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47405 * 269.99868 * 3 2 1 5 5 H 1.48503 * 109.46936 * 30.00281 * 3 2 1 6 6 H 1.48506 * 109.47119 * 149.99906 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.01649 * 325.06244 * 14 13 11 16 16 C 1.54269 * 110.03153 * 86.44953 * 14 13 11 17 17 C 1.54890 * 104.19341 * 142.89658 * 16 14 13 18 18 C 1.54888 * 102.74728 * 322.05771 * 17 16 14 19 19 H 1.09008 * 110.48427 * 279.26335 * 18 17 16 20 20 C 1.52999 * 110.48445 * 156.75496 * 18 17 16 21 21 N 1.46905 * 109.47272 * 66.45179 * 20 18 17 22 22 C 1.46896 * 111.00166 * 179.97438 * 21 20 18 23 23 C 1.50696 * 109.47319 * 179.97438 * 22 21 20 24 24 C 1.40899 * 125.30401 * 94.72365 * 23 22 21 25 25 N 1.29954 * 109.39280 * 179.80246 * 24 23 22 26 26 O 1.41868 * 107.41201 * 0.44448 * 25 24 23 27 27 N 1.29956 * 125.30873 * 275.02931 * 23 22 21 28 28 C 1.53866 * 110.03333 * 203.61958 * 14 13 11 29 29 H 0.96996 * 120.00393 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 31 31 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 32 32 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 33 33 H 1.09001 * 110.48942 * 261.57242 * 16 14 13 34 34 H 1.08999 * 110.48915 * 24.08244 * 16 14 13 35 35 H 1.09004 * 110.75648 * 80.37385 * 17 16 14 36 36 H 1.09007 * 110.75304 * 203.74130 * 17 16 14 37 37 H 1.08999 * 109.47153 * 186.45009 * 20 18 17 38 38 H 1.09000 * 109.47208 * 306.45178 * 20 18 17 39 39 H 1.00899 * 110.99852 * 303.95820 * 21 20 18 40 40 H 1.09003 * 109.47482 * 300.00460 * 22 21 20 41 41 H 1.09000 * 109.46788 * 60.00265 * 22 21 20 42 42 H 1.08004 * 125.30348 * 0.02562 * 24 23 22 43 43 H 1.09007 * 110.03439 * 359.97438 * 28 14 13 44 44 H 1.08999 * 110.03837 * 121.43035 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 1 1.4129 -7.7703 0.5836 16 6 2.0628 -8.1778 -1.4490 17 6 2.4724 -9.6715 -1.4521 18 6 3.7220 -9.6850 -0.5370 19 1 4.6040 -9.3631 -1.0909 20 6 3.9403 -11.0808 0.0505 21 7 4.2891 -12.0166 -1.0269 22 6 4.5071 -13.3698 -0.4987 23 6 4.8613 -14.2998 -1.6304 24 6 6.1703 -14.6359 -2.0287 25 7 6.1178 -15.4619 -3.0306 26 8 4.7482 -15.6842 -3.3262 27 7 4.0071 -14.9123 -2.3946 28 6 3.3855 -8.6734 0.5779 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7312 -0.8905 31 1 3.1245 -3.7312 0.8895 32 1 3.8010 -6.1834 -0.0004 33 1 1.0060 -8.0716 -1.6942 34 1 2.6749 -7.6108 -2.1504 35 1 1.6794 -10.2904 -1.0322 36 1 2.7278 -9.9999 -2.4596 37 1 4.7512 -11.0459 0.7781 38 1 3.0263 -11.4156 0.5409 39 1 3.5823 -12.0186 -1.7469 40 1 5.3220 -13.3506 0.2249 41 1 3.5971 -13.7208 -0.0119 42 1 7.0762 -14.2676 -1.5703 43 1 4.2800 -8.1177 0.8598 44 1 2.9801 -9.1946 1.4451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734467369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = 45.445585 kcal Electronic energy + Delta-G solvation = -25328.896880 eV Core-core repulsion = 21411.284723 eV Total energy + Delta-G solvation = -3917.612157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.96252 -39.86785 -38.37957 -36.65396 -34.20497 -33.41512 -32.91989 -32.43595 -30.25099 -29.45284 -28.07952 -26.42066 -25.46123 -24.17957 -23.56582 -21.66709 -20.95711 -20.36593 -20.14643 -17.97969 -17.84105 -16.79748 -16.63246 -16.32596 -16.29521 -15.59293 -15.40619 -15.20248 -14.89592 -14.81206 -14.55436 -14.33340 -13.84225 -13.68278 -13.20912 -13.15110 -12.90203 -12.71803 -12.43637 -12.36428 -12.35572 -11.87292 -11.73488 -11.59613 -11.49645 -11.29509 -11.07154 -11.03527 -11.03126 -10.89050 -10.84933 -10.76259 -9.81992 -9.38193 -9.23914 -9.07713 -8.86759 -8.24204 -6.50646 -6.22380 -3.92963 -0.05988 1.37499 2.07225 2.57410 3.03836 3.08919 3.21683 3.26537 3.28089 3.32064 3.56363 3.73506 4.10035 4.19638 4.21037 4.32620 4.34663 4.48088 4.63415 4.82122 4.86028 4.90614 5.04111 5.12855 5.13839 5.15622 5.17573 5.28571 5.30229 5.41918 5.50666 5.59054 5.66563 5.77621 5.88224 5.98594 6.06880 6.11987 6.14258 6.21045 6.30724 6.56162 6.70811 7.58776 7.72365 8.34433 8.62687 9.22982 10.85052 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.036822 B = 0.001428 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.236445 B =19606.329426 C =19757.793322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.143 3.857 15 H 0.089 0.911 16 C -0.134 4.134 17 C -0.123 4.123 18 C -0.090 4.090 19 H 0.087 0.913 20 C 0.067 3.933 21 N -0.685 5.685 22 C 0.122 3.878 23 C 0.077 3.923 24 C 0.064 3.936 25 N -0.274 5.274 26 O 0.025 5.975 27 N -0.269 5.269 28 C -0.124 4.124 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.350 0.650 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.215 0.785 43 H 0.074 0.926 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 -28.485 1.018 31.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.388 5.388 14 C 0.038 3.962 15 H 0.108 0.892 16 C -0.173 4.173 17 C -0.161 4.161 18 C -0.109 4.109 19 H 0.106 0.894 20 C -0.062 4.062 21 N -0.318 5.318 22 C -0.008 4.008 23 C -0.106 4.106 24 C -0.139 4.139 25 N -0.017 5.017 26 O -0.116 6.116 27 N -0.013 5.013 28 C -0.162 4.162 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.169 0.831 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.231 0.769 43 H 0.093 0.907 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.028 -29.411 -0.003 31.776 hybrid contribution 1.909 1.583 0.701 2.577 sum 13.938 -27.828 0.698 31.131 Atomic orbital electron populations 1.70013 1.05957 1.27457 1.46860 1.24986 0.95015 0.99014 0.94525 0.86174 0.79409 0.81589 0.78356 1.20268 1.20743 1.19706 1.22871 0.94906 0.91684 1.58963 0.90943 1.85396 1.04978 0.96331 1.96715 1.23538 1.06538 0.95532 1.04856 1.20323 0.86610 0.86343 0.74950 1.90696 1.15395 1.85600 1.47490 1.46200 1.09702 1.05242 1.77645 1.21506 0.97442 0.80864 0.96380 0.89242 1.22783 1.02432 0.95136 0.96953 1.22577 0.96841 0.96961 0.99672 1.22005 0.99102 0.93249 0.96509 0.89431 1.22075 0.99900 0.91423 0.92758 1.60491 1.52305 1.04954 1.14037 1.20567 1.02991 0.86372 0.90907 1.24638 0.90572 0.97385 0.98033 1.26078 0.99927 0.94150 0.93748 1.79966 0.96502 1.12651 1.12542 1.93434 1.09847 1.60160 1.48206 1.79957 1.17383 1.04066 0.99888 1.22435 0.99071 0.96650 0.98073 0.92181 0.89289 0.89285 0.76881 0.90916 0.90976 0.91504 0.91255 0.90228 0.94259 0.83143 0.87242 0.91836 0.76864 0.90708 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.60 7.84 -10.99 -0.09 9.52 16 12 O -0.52 -11.49 15.54 5.56 0.09 -11.41 16 13 N -0.73 -9.13 5.05 -52.72 -0.27 -9.40 16 14 C 0.14 1.52 3.23 -66.82 -0.22 1.30 16 15 H 0.09 1.15 7.61 -51.93 -0.39 0.75 16 16 C -0.13 -1.36 6.53 -25.07 -0.16 -1.52 16 17 C -0.12 -0.85 5.55 -24.74 -0.14 -0.99 16 18 C -0.09 -0.50 3.11 -88.96 -0.28 -0.77 16 19 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 20 C 0.07 0.26 5.04 -3.82 -0.02 0.24 16 21 N -0.68 -2.82 6.49 -115.06 -0.75 -3.56 16 22 C 0.12 0.34 6.23 -4.98 -0.03 0.31 16 23 C 0.08 0.39 6.70 -82.38 -0.55 -0.16 16 24 C 0.06 0.28 11.90 -17.34 -0.21 0.07 16 25 N -0.27 -2.18 12.98 30.70 0.40 -1.78 16 26 O 0.03 0.25 13.71 12.03 0.16 0.42 16 27 N -0.27 -2.24 12.98 33.74 0.44 -1.80 16 28 C -0.12 -0.83 6.14 -25.62 -0.16 -0.98 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 31 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 32 H 0.40 3.78 8.30 -40.82 -0.34 3.44 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.77 8.05 -51.93 -0.42 0.36 16 35 H 0.07 0.45 8.02 -51.93 -0.42 0.03 16 36 H 0.07 0.46 7.99 -51.92 -0.42 0.05 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.04 0.16 8.10 -51.93 -0.42 -0.26 16 39 H 0.35 1.75 7.82 -39.29 -0.31 1.44 16 40 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.21 -0.02 8.06 -52.48 -0.42 -0.44 16 43 H 0.07 0.45 7.60 -51.93 -0.39 0.06 16 44 H 0.07 0.45 7.84 -51.93 -0.41 0.05 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -36.19 387.33 -8.45 -44.64 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.44 Total: -1.31 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.43 Total: -8.70 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.56 Total: -41.88 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.25 Total: -10.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.19 -8.45 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734467369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.088 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds