Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47405 * 269.99868 * 3 2 1 5 5 H 1.48503 * 109.46936 * 30.00281 * 3 2 1 6 6 H 1.48506 * 109.47119 * 149.99906 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.01649 * 325.06244 * 14 13 11 16 16 C 1.54269 * 110.03153 * 86.44953 * 14 13 11 17 17 C 1.54890 * 104.19341 * 142.89658 * 16 14 13 18 18 C 1.54888 * 102.74728 * 322.05771 * 17 16 14 19 19 H 1.09008 * 110.48427 * 279.26335 * 18 17 16 20 20 C 1.52999 * 110.48445 * 156.75496 * 18 17 16 21 21 N 1.46905 * 109.47272 * 66.45179 * 20 18 17 22 22 C 1.46896 * 111.00166 * 179.97438 * 21 20 18 23 23 C 1.50696 * 109.47319 * 179.97438 * 22 21 20 24 24 C 1.40899 * 125.30401 * 94.72365 * 23 22 21 25 25 N 1.29954 * 109.39280 * 179.80246 * 24 23 22 26 26 O 1.41868 * 107.41201 * 0.44448 * 25 24 23 27 27 N 1.29956 * 125.30873 * 275.02931 * 23 22 21 28 28 C 1.53866 * 110.03333 * 203.61958 * 14 13 11 29 29 H 0.96996 * 120.00393 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 31 31 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 32 32 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 33 33 H 1.09001 * 110.48942 * 261.57242 * 16 14 13 34 34 H 1.08999 * 110.48915 * 24.08244 * 16 14 13 35 35 H 1.09004 * 110.75648 * 80.37385 * 17 16 14 36 36 H 1.09007 * 110.75304 * 203.74130 * 17 16 14 37 37 H 1.08999 * 109.47153 * 186.45009 * 20 18 17 38 38 H 1.09000 * 109.47208 * 306.45178 * 20 18 17 39 39 H 1.00899 * 110.99852 * 303.95820 * 21 20 18 40 40 H 1.09003 * 109.47482 * 300.00460 * 22 21 20 41 41 H 1.09000 * 109.46788 * 60.00265 * 22 21 20 42 42 H 1.08004 * 125.30348 * 0.02562 * 24 23 22 43 43 H 1.09007 * 110.03439 * 359.97438 * 28 14 13 44 44 H 1.08999 * 110.03837 * 121.43035 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 1 1.4129 -7.7703 0.5836 16 6 2.0628 -8.1778 -1.4490 17 6 2.4724 -9.6715 -1.4521 18 6 3.7220 -9.6850 -0.5370 19 1 4.6040 -9.3631 -1.0909 20 6 3.9403 -11.0808 0.0505 21 7 4.2891 -12.0166 -1.0269 22 6 4.5071 -13.3698 -0.4987 23 6 4.8613 -14.2998 -1.6304 24 6 6.1703 -14.6359 -2.0287 25 7 6.1178 -15.4619 -3.0306 26 8 4.7482 -15.6842 -3.3262 27 7 4.0071 -14.9123 -2.3946 28 6 3.3855 -8.6734 0.5779 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7312 -0.8905 31 1 3.1245 -3.7312 0.8895 32 1 3.8010 -6.1834 -0.0004 33 1 1.0060 -8.0716 -1.6942 34 1 2.6749 -7.6108 -2.1504 35 1 1.6794 -10.2904 -1.0322 36 1 2.7278 -9.9999 -2.4596 37 1 4.7512 -11.0459 0.7781 38 1 3.0263 -11.4156 0.5409 39 1 3.5823 -12.0186 -1.7469 40 1 5.3220 -13.3506 0.2249 41 1 3.5971 -13.7208 -0.0119 42 1 7.0762 -14.2676 -1.5703 43 1 4.2800 -8.1177 0.8598 44 1 2.9801 -9.1946 1.4451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734467369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = 17.265113 kcal Electronic energy + Delta-G solvation = -25330.118877 eV Core-core repulsion = 21411.284723 eV Total energy + Delta-G solvation = -3918.834154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39747 -40.95051 -39.27230 -37.18900 -35.01933 -34.58047 -34.05661 -33.53963 -31.26841 -30.35590 -28.85061 -27.67719 -26.97354 -24.63439 -23.93108 -22.19317 -21.93931 -21.34721 -20.75195 -19.80780 -18.35762 -17.93000 -17.36193 -17.06803 -16.93902 -16.87501 -16.45597 -16.11471 -15.94411 -15.66495 -15.56109 -15.23462 -14.86916 -14.60046 -14.37794 -14.19369 -13.73493 -13.55322 -13.21776 -13.16113 -13.02122 -12.89414 -12.81582 -12.75116 -12.60085 -12.35367 -12.23595 -12.09328 -11.85119 -11.73030 -11.64207 -11.51103 -11.41207 -11.13940 -10.88566 -10.26685 -10.03248 -9.49884 -8.66288 -8.34237 -6.12428 -0.50113 1.03988 1.28278 1.42956 1.48329 1.55595 1.58619 1.64390 2.16534 2.27302 2.35038 2.92498 3.00029 3.26043 3.33427 3.58133 3.73408 3.85604 3.90159 4.03817 4.12090 4.31418 4.40588 4.44618 4.47391 4.48821 4.52250 4.59485 4.63282 4.65037 4.71396 4.73653 4.83576 4.97829 5.11017 5.12018 5.24632 5.31798 5.42172 5.52104 5.65954 5.86148 5.91490 6.20163 6.22315 6.56943 7.07106 7.30636 8.74997 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.036822 B = 0.001428 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.236445 B =19606.329426 C =19757.793322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.706 5.706 14 C 0.137 3.863 15 H 0.063 0.937 16 C -0.136 4.136 17 C -0.114 4.114 18 C -0.079 4.079 19 H 0.091 0.909 20 C 0.072 3.928 21 N -0.689 5.689 22 C 0.124 3.876 23 C 0.093 3.907 24 C 0.088 3.912 25 N -0.307 5.307 26 O -0.026 6.026 27 N -0.302 5.302 28 C -0.113 4.113 29 H 0.271 0.729 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.416 0.584 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.041 0.959 39 H 0.342 0.658 40 H 0.145 0.855 41 H 0.066 0.934 42 H 0.263 0.737 43 H 0.091 0.909 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.894 -28.759 2.466 33.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.360 5.360 14 C 0.032 3.968 15 H 0.081 0.919 16 C -0.175 4.175 17 C -0.152 4.152 18 C -0.098 4.098 19 H 0.109 0.891 20 C -0.056 4.056 21 N -0.321 5.321 22 C -0.006 4.006 23 C -0.091 4.091 24 C -0.116 4.116 25 N -0.054 5.054 26 O -0.159 6.159 27 N -0.049 5.049 28 C -0.151 4.151 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.254 0.746 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.084 0.916 42 H 0.278 0.722 43 H 0.110 0.890 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.875 -29.761 1.410 33.760 hybrid contribution 0.776 1.615 0.312 1.818 sum 16.651 -28.146 1.722 32.748 Atomic orbital electron populations 1.70182 1.08012 1.28597 1.48038 1.26126 0.95942 1.03325 0.93715 0.84953 0.78239 0.76007 0.78776 1.19368 1.20327 1.18086 1.23215 0.95366 0.92010 1.58860 0.89863 1.85593 1.10763 0.99325 1.97052 1.23384 1.03444 0.94535 1.06732 1.20090 0.86346 0.86787 0.74972 1.90686 1.17561 1.86118 1.50270 1.45981 1.10040 1.04881 1.75118 1.21713 0.98081 0.80309 0.96650 0.91867 1.22743 1.00598 0.97724 0.96450 1.22526 0.97839 0.94249 1.00623 1.21916 0.98054 0.94217 0.95571 0.89111 1.22036 1.00859 0.90000 0.92737 1.60518 1.52015 1.05572 1.14034 1.20806 1.04518 0.85085 0.90206 1.25167 0.90525 0.96154 0.97268 1.26871 1.01124 0.91716 0.91847 1.79938 0.95711 1.14937 1.14779 1.93409 1.10951 1.61761 1.49771 1.79927 1.18515 1.05476 1.00985 1.22382 0.98177 0.95962 0.98586 0.92016 0.87367 0.87146 0.74642 0.93829 0.91529 0.91253 0.90801 0.88203 0.94057 0.84021 0.83706 0.91599 0.72169 0.89027 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.55 -31.09 9.50 67.95 0.65 -30.44 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 C 0.53 19.17 7.84 87.66 0.69 19.85 16 12 O -0.57 -26.18 15.54 -3.04 -0.05 -26.22 16 13 N -0.71 -16.48 5.05 -439.11 -2.22 -18.69 16 14 C 0.14 2.75 3.23 45.71 0.15 2.90 16 15 H 0.06 1.65 7.61 -2.39 -0.02 1.63 16 16 C -0.14 -2.74 6.53 31.67 0.21 -2.53 16 17 C -0.11 -1.41 5.55 31.89 0.18 -1.23 16 18 C -0.08 -0.60 3.11 -9.72 -0.03 -0.63 16 19 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 20 C 0.07 0.26 5.04 86.30 0.44 0.70 16 21 N -0.69 -3.20 6.49 -517.94 -3.36 -6.56 16 22 C 0.12 0.23 6.23 85.56 0.53 0.76 16 23 C 0.09 0.75 6.70 43.49 0.29 1.04 16 24 C 0.09 0.53 11.90 85.62 1.02 1.55 16 25 N -0.31 -4.73 12.98 -56.79 -0.74 -5.47 16 26 O -0.03 -0.55 13.71 70.19 0.96 0.41 16 27 N -0.30 -4.98 12.98 -47.16 -0.61 -5.60 16 28 C -0.11 -1.13 6.14 31.32 0.19 -0.94 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.11 3.78 8.14 -2.39 -0.02 3.77 16 31 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 32 H 0.42 6.63 8.30 -92.71 -0.77 5.86 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.40 8.05 -2.39 -0.02 1.38 16 35 H 0.07 0.83 8.02 -2.38 -0.02 0.82 16 36 H 0.07 0.87 7.99 -2.38 -0.02 0.85 16 37 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.04 0.17 8.10 -2.39 -0.02 0.15 16 39 H 0.34 2.60 7.82 -89.69 -0.70 1.89 16 40 H 0.15 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.26 -1.33 8.06 -2.91 -0.02 -1.36 16 43 H 0.09 0.68 7.60 -2.38 -0.02 0.66 16 44 H 0.09 0.73 7.84 -2.39 -0.02 0.71 16 Total: -1.00 -85.34 387.33 -0.09 -85.43 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -0.43 Total: 9.17 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.21 Total: -12.34 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -6.64 Total: -92.04 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: 0.92 Total: -25.81 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -85.34 -0.09 -85.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734467369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.691 kcal (2) G-P(sol) polarization free energy of solvation -85.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds