Wall clock time and date at job start Sat Apr 11 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39866 * 125.89915 * 2 1 4 4 C 1.35320 * 107.91898 * 179.97438 * 3 2 1 5 5 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03463 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46990 * 125.02933 * 6 5 4 8 8 O 1.21280 * 119.99895 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00093 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47095 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47069 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47110 * 180.02562 * 12 11 10 14 14 C 1.34774 * 119.99941 * 179.97438 * 13 12 11 15 15 O 1.21292 * 119.99970 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00150 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47251 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99888 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99966 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00020 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99531 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00135 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47041 * 89.99689 * 22 20 18 24 24 H 1.48498 * 109.47037 * 209.99808 * 22 20 18 25 25 H 1.48498 * 109.47262 * 329.99999 * 22 20 18 26 26 N 1.30844 * 125.89476 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47315 * 270.01690 * 1 2 3 28 28 H 1.08994 * 109.47486 * 30.01360 * 1 2 3 29 29 H 1.09006 * 109.47537 * 150.01822 * 1 2 3 30 30 H 1.07993 * 126.04141 * 359.97438 * 3 2 1 31 31 H 1.07996 * 126.12765 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.46936 * 245.02312 * 6 5 4 33 33 H 1.08995 * 109.47043 * 5.02520 * 6 5 4 34 34 H 0.97000 * 119.99923 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47247 * 300.00018 * 10 9 7 36 36 H 1.09005 * 109.47011 * 59.99438 * 10 9 7 37 37 H 1.09001 * 109.47181 * 299.99819 * 11 10 9 38 38 H 1.08996 * 109.47364 * 60.00070 * 11 10 9 39 39 H 1.09001 * 109.46735 * 299.99802 * 12 11 10 40 40 H 1.08996 * 109.47207 * 59.99684 * 12 11 10 41 41 H 0.96996 * 120.00141 * 359.97438 * 13 12 11 42 42 H 1.08999 * 109.47313 * 300.00331 * 16 14 13 43 43 H 1.09005 * 109.47174 * 59.99891 * 16 14 13 44 44 H 0.97011 * 119.99419 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0029 7 6 4.7116 -2.4548 1.1669 8 8 3.7629 -2.4143 1.9214 9 7 5.6964 -3.3522 1.3702 10 6 5.6206 -4.2791 2.5021 11 6 6.8541 -5.1843 2.5035 12 6 6.7746 -6.1528 3.6853 13 7 7.9561 -7.0191 3.6870 14 6 8.1027 -7.9569 4.6438 15 8 7.2567 -8.0832 5.5038 16 6 9.3176 -8.8484 4.6452 17 16 9.2244 -9.9930 6.0443 18 6 10.7245 -10.8869 5.8087 19 1 11.3733 -10.6442 4.9801 20 6 11.0718 -11.9037 6.6874 21 7 10.2807 -12.1998 7.6970 22 14 12.6617 -12.8518 6.4373 23 1 13.7610 -12.1777 7.1736 24 1 12.4984 -14.2360 6.9498 25 1 12.9895 -12.8954 4.9896 26 7 2.2741 -1.0600 0.0005 27 1 -0.3634 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5140 29 1 -0.3634 -0.8902 -0.5136 30 1 1.9923 2.1597 -0.0004 31 1 4.4891 1.3484 0.0011 32 1 4.8267 -2.0663 -0.9283 33 1 5.6883 -0.8904 0.0931 34 1 6.4554 -3.3843 0.7670 35 1 5.5836 -3.7135 3.4331 36 1 4.7222 -4.8898 2.4121 37 1 6.8907 -5.7500 1.5725 38 1 7.7526 -4.5739 2.5933 39 1 6.7378 -5.5874 4.6165 40 1 5.8761 -6.7631 3.5951 41 1 8.6328 -6.9178 2.9995 42 1 9.3543 -9.4141 3.7143 43 1 10.2162 -8.2379 4.7350 44 1 10.5236 -12.9102 8.3113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736885031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:48 Heat of formation + Delta-G solvation = 0.148677 kcal Electronic energy + Delta-G solvation = -24648.329830 eV Core-core repulsion = 20728.753452 eV Total energy + Delta-G solvation = -3919.576378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61342 -39.99769 -39.20751 -36.44762 -34.58049 -34.32944 -32.44774 -31.91574 -30.80152 -29.87211 -29.10534 -26.85805 -25.55253 -24.88583 -22.20917 -21.65925 -21.15871 -20.41291 -20.04767 -17.97316 -17.73195 -17.56339 -16.53465 -16.43635 -16.24632 -15.82363 -15.43027 -15.13030 -14.82159 -14.73309 -14.48190 -14.11604 -13.96560 -13.84161 -13.48501 -13.17417 -13.12691 -12.98616 -12.71203 -12.54353 -12.40775 -12.35855 -11.99576 -11.99472 -11.38317 -11.08086 -11.04400 -10.86996 -10.78341 -10.49111 -9.83894 -9.60642 -9.51355 -9.45651 -9.09149 -8.95949 -8.92945 -8.25849 -6.52291 -6.23482 -3.94388 1.47122 1.92845 2.07251 2.48529 2.59924 3.02257 3.05391 3.20783 3.26497 3.30326 3.66803 3.93786 4.09777 4.18484 4.35966 4.41680 4.51329 4.54178 4.54999 4.61436 4.89479 5.11726 5.12473 5.15559 5.24867 5.28284 5.31286 5.45054 5.46553 5.52630 5.59003 5.71714 5.73846 5.82791 5.86099 5.87856 6.09997 6.32855 6.52339 6.54073 6.91061 7.40547 7.57393 7.63547 7.67694 8.33127 8.56235 9.21770 10.83958 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.047903 B = 0.001240 C = 0.001218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.374012 B =22584.073521 C =22979.959542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.066 3.934 3 C -0.267 4.267 4 C 0.052 3.948 5 N -0.367 5.367 6 C 0.118 3.882 7 C 0.497 3.503 8 O -0.505 6.505 9 N -0.729 5.729 10 C 0.123 3.877 11 C -0.142 4.142 12 C 0.124 3.876 13 N -0.740 5.740 14 C 0.531 3.469 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.266 5.266 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.174 0.826 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.401 0.599 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 27.802 -21.521 36.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.296 4.296 4 C -0.092 4.092 5 N -0.149 5.149 6 C -0.008 4.008 7 C 0.280 3.720 8 O -0.377 6.377 9 N -0.383 5.383 10 C 0.000 4.000 11 C -0.180 4.180 12 C -0.001 4.001 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 N -0.088 5.088 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.165 0.835 31 H 0.191 0.809 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.704 26.144 -19.341 34.563 hybrid contribution 2.961 0.478 -1.751 3.473 sum -8.743 26.623 -21.092 35.073 Atomic orbital electron populations 1.20166 0.86673 1.03133 1.03070 1.22432 0.97115 0.90807 0.99792 1.21391 0.91621 0.99817 1.16810 1.22523 0.99894 0.84395 1.02387 1.47957 1.04917 1.04176 1.57848 1.21435 0.86311 0.93712 0.99323 1.20547 0.83005 0.81821 0.86630 1.90832 1.31635 1.69403 1.45860 1.45883 1.24443 1.36544 1.31460 1.21258 0.98527 0.91111 0.89148 1.21968 0.98324 0.97917 0.99784 1.21097 0.89282 0.91949 0.97763 1.45957 1.24568 1.37237 1.31748 1.20331 0.87641 0.79804 0.80529 1.90719 1.43092 1.68722 1.36400 1.23529 0.97762 1.01734 1.07378 1.85431 1.30661 1.37423 1.29844 1.22866 1.07466 1.21764 1.16389 0.90928 1.24992 0.97788 0.96298 0.94465 1.70024 1.36427 1.29725 1.14069 0.86165 0.81935 0.78840 0.78537 1.20264 1.20725 1.19706 1.77470 0.85813 1.22380 1.23149 0.90489 0.90510 0.90982 0.83465 0.80906 0.86763 0.85678 0.76432 0.90806 0.90723 0.90396 0.90430 0.91232 0.91195 0.76839 0.89197 0.89208 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.00 0.38 -0.10 16 2 C 0.07 0.65 7.22 -82.41 -0.59 0.05 16 3 C -0.27 -2.09 10.74 -40.01 -0.43 -2.52 16 4 C 0.05 0.36 11.45 -17.22 -0.20 0.16 16 5 N -0.37 -3.20 3.40 -62.54 -0.21 -3.41 16 6 C 0.12 0.57 6.99 -5.19 -0.04 0.54 16 7 C 0.50 4.10 7.86 -10.99 -0.09 4.01 16 8 O -0.50 -7.00 15.71 5.56 0.09 -6.92 16 9 N -0.73 -3.92 5.56 -60.29 -0.33 -4.26 16 10 C 0.12 0.88 5.67 -4.04 -0.02 0.85 16 11 C -0.14 -0.83 5.44 -26.73 -0.15 -0.97 16 12 C 0.12 1.27 5.67 -4.04 -0.02 1.25 16 13 N -0.74 -9.01 5.56 -60.29 -0.33 -9.35 16 14 C 0.53 9.63 7.85 -10.99 -0.09 9.55 16 15 O -0.52 -11.64 15.86 5.55 0.09 -11.55 16 16 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 22 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 N -0.27 -3.18 11.64 33.67 0.39 -2.79 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.13 0.09 8.07 -51.93 -0.42 -0.33 16 34 H 0.40 0.70 8.47 -40.82 -0.35 0.36 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.40 3.50 8.47 -40.82 -0.35 3.16 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -41.80 397.83 -8.22 -50.02 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.57 Total: -1.91 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.83 Total: -2.85 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.24 Total: -45.15 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -41.80 -8.22 -50.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736885031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.166 kcal (2) G-P(sol) polarization free energy of solvation -41.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds