Wall clock time and date at job start Sat Apr 11 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30455 * 125.98648 * 2 1 4 4 N 1.39932 * 108.89106 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.75179 * 179.97438 * 4 3 2 6 6 C 1.34257 * 108.49830 * 359.74746 * 4 3 2 7 7 C 1.38045 * 107.41158 * 0.39714 * 6 4 3 8 8 C 1.47436 * 126.41235 * 179.87056 * 7 6 4 9 9 O 1.21602 * 120.00091 * 179.68458 * 8 7 6 10 10 N 1.34773 * 119.99867 * 359.41363 * 8 7 6 11 11 C 1.46496 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47401 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47091 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46881 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00259 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99660 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00506 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47479 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99983 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00349 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99961 * 179.97438 * 19 18 17 22 22 N 1.31639 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00330 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46988 * 59.99580 * 23 21 19 25 25 H 1.48492 * 109.47362 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46695 * 300.00023 * 23 21 19 27 27 H 1.09001 * 109.47283 * 270.04614 * 1 2 3 28 28 H 1.09000 * 109.47121 * 30.04121 * 1 2 3 29 29 H 1.08998 * 109.47500 * 150.04700 * 1 2 3 30 30 H 1.09001 * 109.47089 * 89.97240 * 5 4 3 31 31 H 1.08998 * 109.47540 * 209.97592 * 5 4 3 32 32 H 1.09003 * 109.46713 * 329.97656 * 5 4 3 33 33 H 1.07999 * 126.29734 * 180.24309 * 6 4 3 34 34 H 0.97004 * 120.00018 * 359.97438 * 10 8 7 35 35 H 1.09007 * 109.47081 * 299.99672 * 11 10 8 36 36 H 1.08997 * 109.47795 * 59.99548 * 11 10 8 37 37 H 1.09002 * 109.46321 * 299.99746 * 12 11 10 38 38 H 1.08993 * 109.47232 * 59.99541 * 12 11 10 39 39 H 1.08994 * 109.47627 * 299.99499 * 13 12 11 40 40 H 1.09001 * 109.47155 * 60.00046 * 13 12 11 41 41 H 0.97005 * 120.00177 * 0.02562 * 14 13 12 42 42 H 1.09007 * 109.46924 * 300.00560 * 17 15 14 43 43 H 1.08998 * 109.47475 * 60.00023 * 17 15 14 44 44 H 0.97001 * 119.99916 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6110 0.6442 0.0006 5 6 4.7787 1.5290 0.0003 6 6 3.6439 -0.6979 0.0066 7 6 2.3372 -1.1432 0.0007 8 6 1.8915 -2.5485 0.0013 9 8 0.7039 -2.8097 0.0015 10 7 2.8003 -3.5437 -0.0037 11 6 2.3575 -4.9401 -0.0035 12 6 3.5783 -5.8624 -0.0104 13 6 3.1157 -7.3208 -0.0096 14 7 4.2846 -8.2038 -0.0168 15 6 4.1189 -9.5414 -0.0169 16 8 3.0019 -10.0139 -0.0116 17 6 5.3212 -10.4497 -0.0237 18 16 4.7741 -12.1750 -0.0229 19 6 6.3356 -12.9912 -0.0306 20 1 7.2474 -12.4125 -0.0345 21 6 6.3938 -14.3780 -0.0316 22 7 5.2824 -15.0834 -0.0264 23 14 8.0493 -15.2434 -0.0390 24 1 8.8173 -14.8530 1.1704 25 1 7.8394 -16.7134 -0.0396 26 1 8.8071 -14.8516 -1.2546 27 1 -0.3634 0.0008 1.0277 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3634 -0.8904 -0.5131 30 1 5.0678 1.7496 1.0278 31 1 5.6061 1.0387 -0.5127 32 1 4.5310 2.4573 -0.5147 33 1 4.5297 -1.3157 0.0122 34 1 3.7477 -3.3353 -0.0081 35 1 1.7616 -5.1322 0.8888 36 1 1.7541 -5.1301 -0.8911 37 1 4.1737 -5.6701 -0.9029 38 1 4.1820 -5.6726 0.8770 39 1 2.5205 -7.5127 0.8831 40 1 2.5118 -7.5108 -0.8969 41 1 5.1780 -7.8258 -0.0207 42 1 5.9164 -10.2580 -0.9166 43 1 5.9254 -10.2594 0.8633 44 1 5.3231 -16.0526 -0.0275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736885128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:52 Heat of formation + Delta-G solvation = -8.277624 kcal Electronic energy + Delta-G solvation = -24888.827288 eV Core-core repulsion = 20968.885518 eV Total energy + Delta-G solvation = -3919.941770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.90680 -39.57909 -39.13080 -36.31127 -34.61907 -34.33771 -32.43581 -32.08248 -30.75385 -29.84163 -29.04500 -26.63260 -25.57433 -25.09416 -22.87059 -22.13613 -20.81627 -20.39246 -20.08163 -18.19026 -17.79436 -16.57061 -16.43363 -16.38501 -16.15333 -16.13490 -15.45659 -15.16263 -14.81359 -14.73735 -14.45014 -14.17619 -13.86752 -13.85623 -13.60443 -13.14563 -13.05893 -12.99674 -12.66969 -12.61709 -12.41106 -12.28588 -11.96286 -11.91622 -11.33750 -11.32136 -11.05516 -11.04654 -10.77999 -10.16237 -9.86131 -9.83465 -9.47864 -9.43161 -9.09217 -9.07206 -8.92147 -8.24796 -6.50913 -6.22159 -3.93074 0.98161 1.73615 1.80167 2.76542 3.07739 3.08172 3.11244 3.22588 3.27176 3.31102 3.70368 3.81145 4.00651 4.19719 4.37965 4.48553 4.53191 4.60641 4.67018 4.72970 4.76786 4.90901 4.96203 5.12799 5.16526 5.21782 5.34207 5.37735 5.51697 5.56665 5.61474 5.64711 5.78085 5.88427 5.89786 6.05833 6.11604 6.11727 6.24899 6.56914 7.04097 7.21538 7.58227 7.66849 7.96423 8.34073 8.59148 9.22836 10.85183 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.001376 C = 0.001315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.764221 B =20348.506158 C =21288.604591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.134 3.866 3 N -0.303 5.303 4 N -0.361 5.361 5 C 0.095 3.905 6 C 0.100 3.900 7 C -0.289 4.289 8 C 0.594 3.406 9 O -0.537 6.537 10 N -0.730 5.730 11 C 0.124 3.876 12 C -0.142 4.142 13 C 0.124 3.876 14 N -0.740 5.740 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.183 0.817 34 H 0.396 0.604 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 35.090 -0.016 35.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.125 5.125 4 N -0.138 5.138 5 C -0.045 4.045 6 C -0.052 4.052 7 C -0.305 4.305 8 C 0.382 3.618 9 O -0.415 6.415 10 N -0.382 5.382 11 C 0.000 4.000 12 C -0.181 4.181 13 C -0.001 4.001 14 N -0.395 5.395 15 C 0.317 3.683 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.200 0.800 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.536 35.298 -0.010 35.331 hybrid contribution 3.628 -0.547 0.025 3.670 sum 2.093 34.751 0.015 34.814 Atomic orbital electron populations 1.20371 0.85478 1.04185 1.03708 1.22518 0.97383 0.88645 0.94790 1.77246 0.85886 1.22622 1.26707 1.48332 1.06289 1.04770 1.54446 1.22029 0.83649 0.94826 1.04041 1.23083 0.98879 0.85408 0.97849 1.20251 0.92119 0.94464 1.23620 1.17212 0.85559 0.83429 0.75621 1.90770 1.16251 1.84191 1.50238 1.45788 1.09466 1.06162 1.76802 1.21229 0.96376 0.79045 1.03360 1.21974 0.98229 0.94434 1.03416 1.21106 0.88810 0.87155 1.03010 1.45964 1.09241 1.06092 1.78198 1.20318 0.91024 0.81802 0.75172 1.90716 1.25883 1.75074 1.47283 1.23528 0.98805 1.03179 1.04892 1.85424 1.11518 0.89652 1.96720 1.22828 0.92601 0.93963 1.59161 0.90983 1.24992 0.97671 0.96362 0.94513 1.70011 1.26693 1.06843 1.46690 0.86223 0.82294 0.78202 0.78765 1.19955 1.20794 1.19960 0.90084 0.90996 0.88470 0.90086 0.88912 0.88733 0.80015 0.77029 0.90769 0.90770 0.90537 0.90545 0.91192 0.91196 0.76877 0.89233 0.89231 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 9.92 36.01 0.36 -0.30 16 2 C 0.13 1.29 7.26 -82.02 -0.60 0.69 16 3 N -0.30 -2.86 12.50 33.89 0.42 -2.43 16 4 N -0.36 -2.23 3.98 -67.59 -0.27 -2.50 16 5 C 0.10 0.16 11.44 59.85 0.68 0.85 16 6 C 0.10 0.53 10.99 -16.56 -0.18 0.34 16 7 C -0.29 -2.46 6.13 -105.07 -0.64 -3.11 16 8 C 0.59 5.75 7.81 -12.52 -0.10 5.65 16 9 O -0.54 -7.10 14.92 5.28 0.08 -7.02 16 10 N -0.73 -4.83 5.54 -61.38 -0.34 -5.17 16 11 C 0.12 0.92 5.67 -4.04 -0.02 0.89 16 12 C -0.14 -0.87 5.44 -26.73 -0.15 -1.01 16 13 C 0.12 1.27 5.67 -4.04 -0.02 1.25 16 14 N -0.74 -9.01 5.56 -60.30 -0.33 -9.35 16 15 C 0.53 9.62 7.85 -10.99 -0.09 9.53 16 16 O -0.52 -11.61 15.86 5.55 0.09 -11.52 16 17 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.91 6.55 -51.93 -0.34 0.57 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.18 0.13 7.46 -52.49 -0.39 -0.26 16 34 H 0.40 1.34 7.40 -40.82 -0.30 1.03 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.40 3.51 8.47 -40.82 -0.35 3.16 16 42 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -39.97 394.21 -7.67 -47.64 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.42 Total: -1.75 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.34 Total: -0.87 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.21 Total: -44.76 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.17 Total: -18.54 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.97 -7.67 -47.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736885128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.361 kcal (2) G-P(sol) polarization free energy of solvation -39.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds