Wall clock time and date at job start Sat Apr 11 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35368 * 126.38803 * 2 1 4 4 C 1.41497 * 105.50436 * 180.14354 * 3 2 1 5 5 C 1.47715 * 126.51739 * 179.84411 * 4 3 2 6 6 O 1.21565 * 119.99701 * 359.71272 * 5 4 3 7 7 N 1.34779 * 119.99690 * 179.71053 * 5 4 3 8 8 C 1.46500 * 119.99741 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47175 * 35.00237 * 8 7 5 10 10 C 1.53006 * 109.46998 * 275.00368 * 8 7 5 11 11 C 1.52997 * 109.47204 * 155.00342 * 8 7 5 12 12 N 1.46498 * 109.47113 * 305.00267 * 11 8 7 13 13 C 1.34781 * 120.00367 * 180.02562 * 12 11 8 14 14 O 1.21280 * 119.99444 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00106 * 179.97438 * 13 12 11 16 16 S 1.80994 * 109.47054 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00294 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99447 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00171 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99794 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00061 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47035 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47259 * 119.99244 * 21 19 17 24 24 H 1.48494 * 109.47096 * 239.99642 * 21 19 17 25 25 N 1.31813 * 106.96338 * 359.58352 * 4 3 2 26 26 N 1.28467 * 110.07061 * 0.26304 * 25 4 3 27 27 C 1.46500 * 124.88063 * 180.02562 * 26 25 4 28 28 H 1.09007 * 109.47282 * 270.32436 * 1 2 3 29 29 H 1.08998 * 109.47377 * 30.32041 * 1 2 3 30 30 H 1.09003 * 109.47584 * 150.32652 * 1 2 3 31 31 H 1.08000 * 127.24753 * 359.97438 * 3 2 1 32 32 H 0.96997 * 120.00149 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47050 * 299.99945 * 10 8 7 34 34 H 1.09001 * 109.46801 * 60.00058 * 10 8 7 35 35 H 1.09001 * 109.46998 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.47097 * 64.99664 * 11 8 7 37 37 H 1.09002 * 109.47223 * 184.99845 * 11 8 7 38 38 H 0.97004 * 120.00154 * 359.97438 * 12 11 8 39 39 H 1.08998 * 109.46839 * 299.99506 * 15 13 12 40 40 H 1.09000 * 109.46985 * 59.99712 * 15 13 12 41 41 H 0.97006 * 119.99773 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47280 * 90.02605 * 27 26 25 43 43 H 1.09001 * 109.47251 * 210.02173 * 27 26 25 44 44 H 1.08999 * 109.47644 * 330.02408 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6320 0.5853 -0.0034 5 6 4.8765 1.3812 -0.0080 6 8 4.8213 2.5955 -0.0144 7 7 6.0730 0.7608 -0.0050 8 6 7.3072 1.5501 -0.0101 9 1 7.1601 2.4584 0.5743 10 6 7.6684 1.9227 -1.4495 11 6 8.4415 0.7270 0.6036 12 7 8.0462 0.2694 1.9380 13 6 8.8937 -0.4778 2.6728 14 8 9.9835 -0.7717 2.2291 15 6 8.4872 -0.9479 4.0456 16 16 9.8290 -1.9218 4.7717 17 6 9.1044 -2.3312 6.3247 18 1 8.1105 -1.9836 6.5652 19 6 9.8112 -3.0995 7.2393 20 7 11.0227 -3.5228 6.9463 21 14 9.0432 -3.5330 8.8861 22 1 7.6843 -2.9399 8.9699 23 1 8.9482 -5.0093 9.0147 24 1 9.8866 -2.9937 9.9828 25 7 3.5419 -0.7297 0.0040 26 7 2.3080 -1.0870 0.0060 27 6 1.8376 -2.4744 0.0144 28 1 -0.3634 0.0058 1.0277 29 1 -0.3634 0.8871 -0.5188 30 1 -0.3634 -0.8929 -0.5088 31 1 2.0057 2.1260 -0.0004 32 1 6.1170 -0.2081 -0.0002 33 1 7.8156 1.0144 -2.0338 34 1 6.8603 2.5091 -1.8866 35 1 8.5865 2.5103 -1.4532 36 1 8.6483 -0.1357 -0.0297 37 1 9.3370 1.3436 0.6814 38 1 7.1747 0.5049 2.2931 39 1 8.2805 -0.0851 4.6787 40 1 7.5919 -1.5647 3.9681 41 1 11.5165 -4.0600 7.5854 42 1 1.7204 -2.8122 1.0441 43 1 0.8783 -2.5360 -0.4995 44 1 2.5640 -3.1075 -0.4952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737550338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:57 Heat of formation + Delta-G solvation = -1.530369 kcal Electronic energy + Delta-G solvation = -26227.740016 eV Core-core repulsion = 22308.090828 eV Total energy + Delta-G solvation = -3919.649187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.02378 -39.98452 -38.97347 -36.41857 -34.05011 -33.57085 -33.03385 -32.42314 -31.32708 -29.35967 -27.95075 -27.32068 -25.97470 -25.36913 -23.81738 -21.49453 -21.17808 -20.30841 -20.02569 -17.95303 -17.48719 -16.92424 -16.79248 -16.53969 -16.22271 -15.73565 -15.01815 -14.99354 -14.80140 -14.55747 -14.21182 -14.03077 -13.74346 -13.64113 -13.37354 -13.20723 -13.03222 -12.99731 -12.86398 -12.73611 -12.64566 -12.50098 -12.16197 -11.77177 -11.26242 -11.13156 -11.06929 -11.01300 -10.75258 -10.35011 -9.80355 -9.54139 -9.42353 -9.28104 -9.25453 -9.07494 -8.90570 -8.22453 -6.49093 -6.21399 -3.91556 1.28441 1.75777 2.06696 2.85923 3.05441 3.11239 3.20391 3.21562 3.28514 3.33614 3.73214 3.95090 4.19756 4.20742 4.41585 4.51289 4.54074 4.62159 4.89104 4.89446 5.00934 5.02504 5.11478 5.13831 5.17489 5.26358 5.33426 5.40264 5.47165 5.55721 5.57586 5.72260 5.80351 5.90777 5.97047 6.05805 6.16053 6.23566 6.38952 6.59079 7.20795 7.59731 7.60453 7.69506 7.98842 8.36062 8.60999 9.24122 10.86087 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.002508 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.125812 B =11160.738320 C =13290.195377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.008 3.992 3 C -0.178 4.178 4 C -0.018 4.018 5 C 0.609 3.391 6 O -0.532 6.532 7 N -0.715 5.715 8 C 0.131 3.869 9 H 0.098 0.902 10 C -0.161 4.161 11 C 0.114 3.886 12 N -0.739 5.739 13 C 0.533 3.467 14 O -0.517 6.517 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.258 5.258 26 N -0.279 5.279 27 C 0.083 3.917 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.409 0.591 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.399 0.601 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.443 6.832 -18.255 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.178 4.178 5 C 0.393 3.607 6 O -0.406 6.406 7 N -0.367 5.367 8 C 0.027 3.973 9 H 0.116 0.884 10 C -0.219 4.219 11 C -0.011 4.011 12 N -0.394 5.394 13 C 0.319 3.681 14 O -0.391 6.391 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.094 5.094 26 N -0.068 5.068 27 C -0.057 4.057 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.179 0.821 32 H 0.245 0.755 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.861 6.023 -18.943 28.099 hybrid contribution -2.639 0.253 1.759 3.181 sum -22.500 6.277 -17.184 28.999 Atomic orbital electron populations 1.20358 0.86567 1.03834 1.03436 1.21427 0.95520 0.86680 1.07974 1.21504 0.90457 0.99602 1.09055 1.21834 0.95068 0.89791 1.11098 1.16866 0.81618 0.86348 0.75829 1.90798 1.86808 1.12850 1.50181 1.45978 1.04899 1.11064 1.74776 1.21299 0.82833 0.95332 0.97870 0.88409 1.22111 1.02483 1.02234 0.95101 1.21615 0.96656 0.98845 0.84004 1.45997 1.20194 1.55839 1.17397 1.20297 0.84229 0.77102 0.86478 1.90704 1.21439 1.55177 1.71809 1.23527 1.06763 1.04597 0.95509 1.85377 1.17634 1.63552 1.16759 1.22908 1.04630 1.38744 1.01953 0.90918 1.24995 0.94802 0.95073 0.98769 1.70033 1.10481 1.34033 1.35751 0.86114 0.79124 0.78220 0.82023 1.19638 1.20583 1.20554 1.73544 1.01916 1.14801 1.19135 1.45338 1.02764 1.07671 1.51048 1.22213 1.01592 0.77110 1.04818 0.90199 0.89526 0.91158 0.82076 0.75493 0.91974 0.91525 0.90937 0.90871 0.89811 0.76679 0.89233 0.89296 0.92253 0.89366 0.88643 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.10 36.00 0.36 0.05 16 2 C 0.01 0.06 6.92 -82.21 -0.57 -0.51 16 3 C -0.18 -1.79 10.73 -39.36 -0.42 -2.21 16 4 C -0.02 -0.21 7.13 -82.76 -0.59 -0.80 16 5 C 0.61 7.49 7.79 -12.39 -0.10 7.39 16 6 O -0.53 -7.85 16.59 5.31 0.09 -7.76 16 7 N -0.71 -7.41 4.51 -54.79 -0.25 -7.66 16 8 C 0.13 1.29 2.73 -67.93 -0.19 1.11 16 9 H 0.10 1.05 7.58 -51.93 -0.39 0.66 16 10 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 11 C 0.11 1.30 5.23 -4.04 -0.02 1.28 16 12 N -0.74 -10.13 5.39 -60.30 -0.32 -10.45 16 13 C 0.53 10.04 7.85 -10.98 -0.09 9.95 16 14 O -0.52 -11.72 15.86 5.56 0.09 -11.63 16 15 C -0.15 -3.16 6.16 36.00 0.22 -2.93 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 N -0.26 -2.81 11.67 33.42 0.39 -2.42 16 26 N -0.28 -2.34 3.70 -63.85 -0.24 -2.57 16 27 C 0.08 0.34 11.11 59.85 0.66 1.00 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.14 7.00 -51.93 -0.36 -0.22 16 31 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.41 4.08 8.33 -40.82 -0.34 3.74 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 4.82 8.14 -40.82 -0.33 4.48 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.10 0.13 6.95 -51.93 -0.36 -0.23 16 44 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -38.02 394.34 -7.38 -45.40 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.41 Total: 3.79 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.17 Total: 0.25 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.32 Total: -48.64 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.18 Total: -19.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.02 -7.38 -45.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737550338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.870 kcal (2) G-P(sol) polarization free energy of solvation -38.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds