Wall clock time and date at job start Sat Apr 11 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35368 * 126.38803 * 2 1 4 4 C 1.41497 * 105.50436 * 180.14354 * 3 2 1 5 5 C 1.47715 * 126.51739 * 179.84411 * 4 3 2 6 6 O 1.21565 * 119.99701 * 359.71272 * 5 4 3 7 7 N 1.34779 * 119.99690 * 179.71053 * 5 4 3 8 8 C 1.46500 * 119.99741 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47175 * 35.00237 * 8 7 5 10 10 C 1.53006 * 109.46998 * 275.00368 * 8 7 5 11 11 C 1.52997 * 109.47204 * 155.00342 * 8 7 5 12 12 N 1.46498 * 109.47113 * 305.00267 * 11 8 7 13 13 C 1.34781 * 120.00367 * 180.02562 * 12 11 8 14 14 O 1.21280 * 119.99444 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00106 * 179.97438 * 13 12 11 16 16 S 1.80994 * 109.47054 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00294 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99447 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00171 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99794 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00061 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47035 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47259 * 119.99244 * 21 19 17 24 24 H 1.48494 * 109.47096 * 239.99642 * 21 19 17 25 25 N 1.31813 * 106.96338 * 359.58352 * 4 3 2 26 26 N 1.28467 * 110.07061 * 0.26304 * 25 4 3 27 27 C 1.46500 * 124.88063 * 180.02562 * 26 25 4 28 28 H 1.09007 * 109.47282 * 270.32436 * 1 2 3 29 29 H 1.08998 * 109.47377 * 30.32041 * 1 2 3 30 30 H 1.09003 * 109.47584 * 150.32652 * 1 2 3 31 31 H 1.08000 * 127.24753 * 359.97438 * 3 2 1 32 32 H 0.96997 * 120.00149 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47050 * 299.99945 * 10 8 7 34 34 H 1.09001 * 109.46801 * 60.00058 * 10 8 7 35 35 H 1.09001 * 109.46998 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.47097 * 64.99664 * 11 8 7 37 37 H 1.09002 * 109.47223 * 184.99845 * 11 8 7 38 38 H 0.97004 * 120.00154 * 359.97438 * 12 11 8 39 39 H 1.08998 * 109.46839 * 299.99506 * 15 13 12 40 40 H 1.09000 * 109.46985 * 59.99712 * 15 13 12 41 41 H 0.97006 * 119.99773 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47280 * 90.02605 * 27 26 25 43 43 H 1.09001 * 109.47251 * 210.02173 * 27 26 25 44 44 H 1.08999 * 109.47644 * 330.02408 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6320 0.5853 -0.0034 5 6 4.8765 1.3812 -0.0080 6 8 4.8213 2.5955 -0.0144 7 7 6.0730 0.7608 -0.0050 8 6 7.3072 1.5501 -0.0101 9 1 7.1601 2.4584 0.5743 10 6 7.6684 1.9227 -1.4495 11 6 8.4415 0.7270 0.6036 12 7 8.0462 0.2694 1.9380 13 6 8.8937 -0.4778 2.6728 14 8 9.9835 -0.7717 2.2291 15 6 8.4872 -0.9479 4.0456 16 16 9.8290 -1.9218 4.7717 17 6 9.1044 -2.3312 6.3247 18 1 8.1105 -1.9836 6.5652 19 6 9.8112 -3.0995 7.2393 20 7 11.0227 -3.5228 6.9463 21 14 9.0432 -3.5330 8.8861 22 1 7.6843 -2.9399 8.9699 23 1 8.9482 -5.0093 9.0147 24 1 9.8866 -2.9937 9.9828 25 7 3.5419 -0.7297 0.0040 26 7 2.3080 -1.0870 0.0060 27 6 1.8376 -2.4744 0.0144 28 1 -0.3634 0.0058 1.0277 29 1 -0.3634 0.8871 -0.5188 30 1 -0.3634 -0.8929 -0.5088 31 1 2.0057 2.1260 -0.0004 32 1 6.1170 -0.2081 -0.0002 33 1 7.8156 1.0144 -2.0338 34 1 6.8603 2.5091 -1.8866 35 1 8.5865 2.5103 -1.4532 36 1 8.6483 -0.1357 -0.0297 37 1 9.3370 1.3436 0.6814 38 1 7.1747 0.5049 2.2931 39 1 8.2805 -0.0851 4.6787 40 1 7.5919 -1.5647 3.9681 41 1 11.5165 -4.0600 7.5854 42 1 1.7204 -2.8122 1.0441 43 1 0.8783 -2.5360 -0.4995 44 1 2.5640 -3.1075 -0.4952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737550338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:57 Heat of formation + Delta-G solvation = -30.352062 kcal Electronic energy + Delta-G solvation = -26228.989818 eV Core-core repulsion = 22308.090828 eV Total energy + Delta-G solvation = -3920.898990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.68745 -41.05410 -40.30874 -37.49331 -34.93723 -34.59749 -34.51887 -33.57831 -32.28990 -30.82643 -28.47875 -27.82335 -27.75246 -26.83823 -24.58916 -22.28031 -21.96935 -21.75154 -20.82156 -19.85541 -18.36626 -17.78457 -17.71210 -17.49042 -17.38657 -16.90701 -16.86638 -16.41592 -15.95417 -15.78402 -15.25325 -14.96077 -14.86833 -14.55831 -14.29761 -14.05687 -13.97605 -13.84549 -13.75643 -13.44196 -13.34790 -13.26280 -13.17245 -13.01756 -12.94055 -12.91825 -12.60374 -12.10653 -11.86068 -11.72077 -11.31619 -11.16778 -11.01886 -10.36946 -10.29408 -10.18901 -10.03322 -9.90777 -8.67542 -8.35883 -6.13760 0.48524 1.10122 1.25191 1.40490 1.45302 1.53664 1.57110 1.57815 2.03598 2.24502 2.27683 2.33657 2.98220 3.29721 3.31405 3.53013 3.73986 3.92070 3.95424 4.03729 4.21526 4.23101 4.26581 4.34189 4.48148 4.53164 4.58012 4.59556 4.66443 4.69061 4.75045 4.79008 4.95192 5.02785 5.09313 5.21225 5.31669 5.36475 5.40902 5.41252 5.86554 6.18974 6.33776 6.39644 6.86455 7.05534 7.09631 7.17101 8.73568 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.002508 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.125812 B =11160.738320 C =13290.195377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.020 3.980 3 C -0.206 4.206 4 C -0.045 4.045 5 C 0.608 3.392 6 O -0.564 6.564 7 N -0.707 5.707 8 C 0.140 3.860 9 H 0.092 0.908 10 C -0.155 4.155 11 C 0.116 3.884 12 N -0.715 5.715 13 C 0.537 3.463 14 O -0.560 6.560 15 C -0.131 4.131 16 S -0.145 6.145 17 C -0.546 4.546 18 H 0.080 0.920 19 C 0.013 3.987 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.274 1.274 25 N -0.277 5.277 26 N -0.278 5.278 27 C 0.071 3.929 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.412 0.588 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.410 0.590 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.272 0.728 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.327 6.529 -18.165 31.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.234 4.234 4 C -0.203 4.203 5 C 0.394 3.606 6 O -0.441 6.441 7 N -0.358 5.358 8 C 0.036 3.964 9 H 0.110 0.890 10 C -0.214 4.214 11 C -0.008 4.008 12 N -0.369 5.369 13 C 0.323 3.677 14 O -0.438 6.438 15 C -0.283 4.283 16 S 0.082 5.918 17 C -0.694 4.694 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.199 1.199 25 N -0.114 5.114 26 N -0.068 5.068 27 C -0.067 4.067 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.180 0.820 32 H 0.249 0.751 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.246 0.754 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.146 0.854 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.778 5.724 -18.879 30.134 hybrid contribution -1.846 0.358 1.622 2.483 sum -24.624 6.082 -17.257 30.678 Atomic orbital electron populations 1.20533 0.83442 1.05494 1.04572 1.21988 0.97215 0.85772 1.05526 1.21719 0.90466 1.00563 1.10681 1.21845 0.95288 0.90380 1.12819 1.17030 0.82255 0.86047 0.75244 1.90768 1.87304 1.14113 1.51909 1.45937 1.04656 1.11162 1.74095 1.21239 0.82001 0.94547 0.98645 0.88989 1.22068 1.02788 1.02677 0.93836 1.21753 0.97370 0.99176 0.82488 1.45759 1.19664 1.53781 1.17692 1.19971 0.84106 0.77513 0.86097 1.90696 1.23319 1.57220 1.72524 1.23373 1.04249 1.04202 0.96448 1.85517 1.22459 1.65697 1.18094 1.23222 1.04967 1.39039 1.02204 0.90152 1.26125 0.95215 0.94661 1.03143 1.70187 1.12196 1.34856 1.37434 0.84901 0.78571 0.78166 0.76275 1.18204 1.19755 1.19906 1.73481 1.03553 1.14385 1.19997 1.45794 1.02147 1.09256 1.49557 1.22613 1.03097 0.74988 1.06007 0.89136 0.88643 0.88770 0.82033 0.75132 0.91197 0.92457 0.89433 0.90532 0.89461 0.75373 0.87605 0.87506 0.91945 0.88409 0.85392 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.10 71.23 0.72 0.35 16 2 C 0.02 0.28 6.92 41.40 0.29 0.56 16 3 C -0.21 -4.10 10.73 22.41 0.24 -3.86 16 4 C -0.04 -1.05 7.13 42.46 0.30 -0.74 16 5 C 0.61 15.08 7.79 86.75 0.68 15.76 16 6 O -0.56 -16.96 16.59 -3.92 -0.07 -17.03 16 7 N -0.71 -14.31 4.51 -445.52 -2.01 -16.32 16 8 C 0.14 2.64 2.73 44.99 0.12 2.76 16 9 H 0.09 1.91 7.58 -2.39 -0.02 1.89 16 10 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 11 C 0.12 2.52 5.23 86.38 0.45 2.97 16 12 N -0.72 -18.75 5.39 -463.07 -2.49 -21.25 16 13 C 0.54 19.98 7.85 87.66 0.69 20.67 16 14 O -0.56 -25.63 15.86 -3.03 -0.05 -25.67 16 15 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 16 S -0.14 -8.10 20.57 -56.49 -1.16 -9.26 16 17 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 18 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 21 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 N -0.28 -5.85 11.67 -48.17 -0.56 -6.41 16 26 N -0.28 -4.20 3.70 -355.93 -1.32 -5.51 16 27 C 0.07 0.40 11.11 127.77 1.42 1.82 16 28 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.00 7.00 -2.39 -0.02 -0.02 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.41 7.95 8.33 -92.71 -0.77 7.18 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.41 9.25 8.14 -92.71 -0.75 8.50 16 39 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 40 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 41 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 42 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.13 -0.14 6.95 -2.39 -0.02 -0.16 16 44 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -84.91 394.34 1.31 -83.60 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.49 Total: 23.75 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 7.14 Total: 3.99 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -6.10 Total: -105.21 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.11 Total: -42.70 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -84.91 1.31 -83.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737550338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.252 kcal (2) G-P(sol) polarization free energy of solvation -84.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds