Wall clock time and date at job start Sat Apr 11 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38048 * 126.28973 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00250 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99499 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99923 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.47146 * 325.00259 * 7 6 4 9 9 C 1.53005 * 109.46851 * 84.99948 * 7 6 4 10 10 C 1.52999 * 109.47235 * 204.99509 * 7 6 4 11 11 N 1.46509 * 109.46671 * 55.00215 * 10 7 6 12 12 C 1.34777 * 119.99649 * 179.97438 * 11 10 7 13 13 O 1.21275 * 120.00109 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99685 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.46988 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00001 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00190 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00542 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99748 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47115 * 90.00422 * 20 18 16 22 22 H 1.48502 * 109.46992 * 210.00162 * 20 18 16 23 23 H 1.48501 * 109.47300 * 330.00078 * 20 18 16 24 24 C 1.41288 * 107.17058 * 180.02562 * 3 2 1 25 25 N 1.30453 * 108.01984 * 0.02562 * 24 3 2 26 26 N 1.34251 * 126.29069 * 180.02562 * 2 1 3 27 27 C 1.46498 * 125.75506 * 0.03346 * 26 2 1 28 28 H 1.09004 * 109.46740 * 269.97216 * 1 2 3 29 29 H 1.08996 * 109.47203 * 29.97125 * 1 2 3 30 30 H 1.08994 * 109.47087 * 149.97549 * 1 2 3 31 31 H 0.97002 * 120.00686 * 359.97438 * 6 4 3 32 32 H 1.09001 * 109.47418 * 60.00083 * 9 7 6 33 33 H 1.09002 * 109.47055 * 180.02562 * 9 7 6 34 34 H 1.09001 * 109.46858 * 299.99637 * 9 7 6 35 35 H 1.09001 * 109.46783 * 174.99704 * 10 7 6 36 36 H 1.08997 * 109.47425 * 295.00430 * 10 7 6 37 37 H 0.96997 * 119.99751 * 359.97438 * 11 10 7 38 38 H 1.09001 * 109.46869 * 299.99137 * 14 12 11 39 39 H 1.08997 * 109.47214 * 59.99787 * 14 12 11 40 40 H 0.97001 * 120.00284 * 179.97438 * 19 18 16 41 41 H 1.07997 * 125.99233 * 180.02562 * 24 3 2 42 42 H 1.09003 * 109.47283 * 269.97848 * 27 26 2 43 43 H 1.08996 * 109.47038 * 29.98554 * 27 26 2 44 44 H 1.09007 * 109.46797 * 149.98216 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7999 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 1 1.4524 5.0061 -0.5891 9 6 2.0934 5.3593 1.4370 10 6 3.4608 5.7850 -0.6103 11 7 3.8042 5.2801 -1.9420 12 6 4.7522 5.8988 -2.6734 13 8 5.3206 6.8737 -2.2293 14 6 5.1051 5.3797 -4.0435 15 16 6.4012 6.4162 -4.7659 16 6 6.6125 5.6058 -6.3161 17 1 6.0173 4.7375 -6.5570 18 6 7.5447 6.0827 -7.2272 19 7 7.7029 5.4770 -8.3851 20 14 8.5747 7.5842 -6.8101 21 1 9.8247 7.1545 -6.1333 22 1 8.9135 8.3143 -8.0582 23 1 7.8049 8.4775 -5.9075 24 6 3.6591 0.6499 -0.0006 25 7 3.6340 -0.6543 -0.0015 26 7 2.3017 -1.0821 -0.0005 27 6 1.8501 -2.4757 -0.0018 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 3.7462 3.2974 -0.0005 32 1 3.0054 5.2627 2.0261 33 1 1.7689 6.3999 1.4370 34 1 1.3123 4.7356 1.8717 35 1 3.1027 6.8113 -0.6920 36 1 4.3443 5.7581 0.0275 37 1 3.3493 4.5005 -2.2973 38 1 5.4634 4.3535 -3.9620 39 1 4.2214 5.4066 -4.6809 40 1 8.3541 5.8105 -9.0220 41 1 4.5449 1.2677 -0.0004 42 1 1.7380 -2.8223 1.0255 43 1 0.8916 -2.5466 -0.5159 44 1 2.5849 -3.0953 -0.5161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737550364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:01 Heat of formation + Delta-G solvation = -5.280332 kcal Electronic energy + Delta-G solvation = -26376.256552 eV Core-core repulsion = 22456.444754 eV Total energy + Delta-G solvation = -3919.811798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83954 -39.90654 -39.02929 -36.45382 -34.22959 -33.60504 -32.43503 -32.37339 -31.38407 -29.51558 -27.78986 -27.24769 -26.02737 -25.52603 -23.28690 -21.74192 -20.64996 -20.45272 -20.05433 -18.14807 -17.75724 -16.70513 -16.37767 -16.27356 -16.25048 -15.65576 -15.15354 -14.97840 -14.96178 -14.82159 -14.18680 -13.93022 -13.65027 -13.54669 -13.52434 -13.17960 -13.07291 -12.99524 -12.91050 -12.79539 -12.69698 -12.54314 -12.22327 -11.91311 -11.30526 -11.25340 -11.21326 -11.00604 -10.60414 -10.07017 -9.85945 -9.81836 -9.57950 -9.41409 -9.05070 -8.98471 -8.92969 -8.50209 -6.91658 -6.28533 -4.00347 1.14992 1.83614 1.91539 2.73956 2.92224 2.98970 3.19704 3.31397 3.34687 3.50709 3.65851 4.02298 4.13994 4.33355 4.37190 4.51982 4.58450 4.65407 4.73300 4.81274 4.85492 4.94059 4.99668 5.09963 5.10514 5.12049 5.26429 5.33289 5.41373 5.47004 5.59133 5.66291 5.74782 5.77996 5.91946 6.01831 6.02802 6.23428 6.42378 6.47467 7.14357 7.30622 7.56683 7.94537 8.04792 8.42297 8.45965 9.17591 10.80737 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.002385 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.812308 B =11738.095060 C =13338.050990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.159 3.841 3 C -0.302 4.302 4 C 0.601 3.399 5 O -0.548 6.548 6 N -0.725 5.725 7 C 0.134 3.866 8 H 0.097 0.903 9 C -0.160 4.160 10 C 0.113 3.887 11 N -0.737 5.737 12 C 0.531 3.469 13 O -0.519 6.519 14 C -0.125 4.125 15 S -0.141 6.141 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.086 3.914 25 N -0.296 5.296 26 N -0.364 5.364 27 C 0.095 3.905 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.401 0.599 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.401 0.599 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.190 0.810 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.028 -13.349 21.732 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.026 3.974 3 C -0.317 4.317 4 C 0.389 3.611 5 O -0.426 6.426 6 N -0.377 5.377 7 C 0.030 3.970 8 H 0.115 0.885 9 C -0.219 4.219 10 C -0.012 4.012 11 N -0.392 5.392 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.275 4.275 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.102 4.102 25 N -0.114 5.114 26 N -0.143 5.143 27 C -0.046 4.046 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.089 0.911 31 H 0.236 0.764 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.207 0.793 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.158 -12.758 22.294 29.825 hybrid contribution -0.160 -0.493 -0.799 0.952 sum -15.318 -13.251 21.495 29.534 Atomic orbital electron populations 1.20706 0.85997 1.04965 1.04128 1.21546 0.94939 0.86301 0.94587 1.19939 0.92881 0.93422 1.25456 1.17154 0.85320 0.83611 0.74996 1.90734 1.16471 1.84271 1.51171 1.45866 1.09923 1.05582 1.76295 1.21216 0.98220 0.79893 0.97699 0.88507 1.22107 1.02498 1.02032 0.95264 1.21638 0.97598 0.98034 0.83905 1.45962 1.41623 1.33918 1.17730 1.20278 0.78508 0.83076 0.86417 1.90704 1.51249 1.25713 1.71649 1.23280 1.04460 1.04514 0.95264 1.84771 1.46621 1.40758 1.19337 1.22315 1.26989 1.17552 1.00011 0.89403 1.24719 0.95858 0.96867 0.93902 1.69940 1.34593 1.40079 1.07118 0.86731 0.82016 0.83748 0.79326 1.19212 1.19957 1.15905 1.24058 0.97212 0.92066 0.96885 1.77247 0.95862 1.13330 1.24988 1.48401 1.04150 1.06464 1.55291 1.21992 1.01467 0.77277 1.03893 0.89514 0.87383 0.91080 0.76385 0.92056 0.91147 0.91528 0.89916 0.90862 0.76478 0.88510 0.88471 0.91942 0.79299 0.90175 0.89052 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 9.57 36.01 0.34 -0.29 16 2 C 0.16 1.40 7.01 -81.60 -0.57 0.83 16 3 C -0.30 -2.94 6.13 -105.06 -0.64 -3.58 16 4 C 0.60 6.11 7.78 -12.52 -0.10 6.01 16 5 O -0.55 -6.88 14.50 5.27 0.08 -6.80 16 6 N -0.72 -5.88 4.51 -54.88 -0.25 -6.13 16 7 C 0.13 1.11 2.73 -67.93 -0.19 0.93 16 8 H 0.10 0.92 7.58 -51.93 -0.39 0.53 16 9 C -0.16 -1.17 9.48 37.16 0.35 -0.82 16 10 C 0.11 1.11 5.23 -4.04 -0.02 1.09 16 11 N -0.74 -8.78 5.39 -60.29 -0.32 -9.11 16 12 C 0.53 9.06 7.85 -10.99 -0.09 8.97 16 13 O -0.52 -10.79 15.86 5.56 0.09 -10.70 16 14 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 15 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 16 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 17 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 20 Si 0.86 21.78 27.74 -169.99 -4.71 17.06 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 24 C 0.09 0.79 11.50 -16.98 -0.20 0.59 16 25 N -0.30 -3.10 12.50 30.86 0.39 -2.72 16 26 N -0.36 -3.09 3.98 -63.34 -0.25 -3.34 16 27 C 0.09 0.39 11.24 59.85 0.67 1.06 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.11 0.88 6.50 -51.93 -0.34 0.54 16 30 H 0.07 0.28 7.05 -51.93 -0.37 -0.09 16 31 H 0.40 2.70 7.56 -40.82 -0.31 2.39 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.40 4.09 8.14 -40.82 -0.33 3.76 16 38 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.19 1.19 7.50 -52.49 -0.39 0.80 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 0.18 7.02 -51.93 -0.36 -0.19 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -37.66 387.27 -6.67 -44.33 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.30 Total: 2.35 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 0.01 Total: 0.64 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.34 Total: -47.17 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.16 Total: -17.51 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.66 -6.67 -44.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737550364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.050 kcal (2) G-P(sol) polarization free energy of solvation -37.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds