Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38048 * 126.28973 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00250 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99499 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99923 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.47146 * 325.00259 * 7 6 4 9 9 C 1.53005 * 109.46851 * 84.99948 * 7 6 4 10 10 C 1.52999 * 109.47235 * 204.99509 * 7 6 4 11 11 N 1.46509 * 109.46671 * 55.00215 * 10 7 6 12 12 C 1.34777 * 119.99649 * 179.97438 * 11 10 7 13 13 O 1.21275 * 120.00109 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99685 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.46988 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00001 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00190 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00542 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99748 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47115 * 90.00422 * 20 18 16 22 22 H 1.48502 * 109.46992 * 210.00162 * 20 18 16 23 23 H 1.48501 * 109.47300 * 330.00078 * 20 18 16 24 24 C 1.41288 * 107.17058 * 180.02562 * 3 2 1 25 25 N 1.30453 * 108.01984 * 0.02562 * 24 3 2 26 26 N 1.34251 * 126.29069 * 180.02562 * 2 1 3 27 27 C 1.46498 * 125.75506 * 0.03346 * 26 2 1 28 28 H 1.09004 * 109.46740 * 269.97216 * 1 2 3 29 29 H 1.08996 * 109.47203 * 29.97125 * 1 2 3 30 30 H 1.08994 * 109.47087 * 149.97549 * 1 2 3 31 31 H 0.97002 * 120.00686 * 359.97438 * 6 4 3 32 32 H 1.09001 * 109.47418 * 60.00083 * 9 7 6 33 33 H 1.09002 * 109.47055 * 180.02562 * 9 7 6 34 34 H 1.09001 * 109.46858 * 299.99637 * 9 7 6 35 35 H 1.09001 * 109.46783 * 174.99704 * 10 7 6 36 36 H 1.08997 * 109.47425 * 295.00430 * 10 7 6 37 37 H 0.96997 * 119.99751 * 359.97438 * 11 10 7 38 38 H 1.09001 * 109.46869 * 299.99137 * 14 12 11 39 39 H 1.08997 * 109.47214 * 59.99787 * 14 12 11 40 40 H 0.97001 * 120.00284 * 179.97438 * 19 18 16 41 41 H 1.07997 * 125.99233 * 180.02562 * 24 3 2 42 42 H 1.09003 * 109.47283 * 269.97848 * 27 26 2 43 43 H 1.08996 * 109.47038 * 29.98554 * 27 26 2 44 44 H 1.09007 * 109.46797 * 149.98216 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7999 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 1 1.4524 5.0061 -0.5891 9 6 2.0934 5.3593 1.4370 10 6 3.4608 5.7850 -0.6103 11 7 3.8042 5.2801 -1.9420 12 6 4.7522 5.8988 -2.6734 13 8 5.3206 6.8737 -2.2293 14 6 5.1051 5.3797 -4.0435 15 16 6.4012 6.4162 -4.7659 16 6 6.6125 5.6058 -6.3161 17 1 6.0173 4.7375 -6.5570 18 6 7.5447 6.0827 -7.2272 19 7 7.7029 5.4770 -8.3851 20 14 8.5747 7.5842 -6.8101 21 1 9.8247 7.1545 -6.1333 22 1 8.9135 8.3143 -8.0582 23 1 7.8049 8.4775 -5.9075 24 6 3.6591 0.6499 -0.0006 25 7 3.6340 -0.6543 -0.0015 26 7 2.3017 -1.0821 -0.0005 27 6 1.8501 -2.4757 -0.0018 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 3.7462 3.2974 -0.0005 32 1 3.0054 5.2627 2.0261 33 1 1.7689 6.3999 1.4370 34 1 1.3123 4.7356 1.8717 35 1 3.1027 6.8113 -0.6920 36 1 4.3443 5.7581 0.0275 37 1 3.3493 4.5005 -2.2973 38 1 5.4634 4.3535 -3.9620 39 1 4.2214 5.4066 -4.6809 40 1 8.3541 5.8105 -9.0220 41 1 4.5449 1.2677 -0.0004 42 1 1.7380 -2.8223 1.0255 43 1 0.8916 -2.5466 -0.5159 44 1 2.5849 -3.0953 -0.5161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737550364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = -33.887624 kcal Electronic energy + Delta-G solvation = -26377.497057 eV Core-core repulsion = 22456.444754 eV Total energy + Delta-G solvation = -3921.052303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.47958 -40.90469 -40.11786 -37.37378 -34.97133 -34.66919 -34.50570 -33.00150 -32.18476 -30.84110 -28.37924 -27.89089 -27.72073 -26.82793 -24.00142 -22.43507 -21.76552 -21.32670 -20.73131 -19.87826 -18.71361 -17.84941 -17.57411 -17.15742 -17.02570 -16.85727 -16.48985 -16.39003 -15.79011 -15.62565 -15.44031 -14.98296 -14.93480 -14.75720 -14.22191 -14.14329 -13.97413 -13.83319 -13.63255 -13.46822 -13.37834 -13.32604 -13.26005 -13.03045 -12.99172 -12.89634 -12.61095 -12.01093 -11.87461 -11.85051 -11.16451 -11.02251 -10.86751 -10.53086 -10.42217 -10.19447 -10.14022 -9.59017 -8.98324 -8.51021 -6.21607 0.50088 0.99866 1.14491 1.32356 1.40318 1.47642 1.56749 1.57536 2.15994 2.25589 2.33907 2.47075 2.72539 2.87281 3.49979 3.59683 3.62611 3.87533 3.99949 4.05465 4.11749 4.23816 4.31270 4.32624 4.39134 4.48510 4.50061 4.63004 4.63521 4.68729 4.76099 4.81512 4.95736 5.04392 5.13848 5.27367 5.39382 5.41585 5.54673 5.71099 5.89028 6.12017 6.41624 6.48635 6.63020 6.94091 7.17238 7.31220 8.61518 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.002385 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.812308 B =11738.095060 C =13338.050990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.154 3.846 3 C -0.325 4.325 4 C 0.602 3.398 5 O -0.576 6.576 6 N -0.716 5.716 7 C 0.145 3.855 8 H 0.088 0.912 9 C -0.155 4.155 10 C 0.116 3.884 11 N -0.713 5.713 12 C 0.539 3.461 13 O -0.558 6.558 14 C -0.114 4.114 15 S -0.171 6.171 16 C -0.529 4.529 17 H 0.060 0.940 18 C 0.044 3.956 19 N -0.919 5.919 20 Si 0.916 3.084 21 H -0.261 1.261 22 H -0.260 1.260 23 H -0.235 1.235 24 C 0.085 3.915 25 N -0.330 5.330 26 N -0.364 5.364 27 C 0.083 3.917 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.410 0.590 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.412 0.588 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.277 0.723 41 H 0.210 0.790 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.696 -13.604 23.284 31.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.020 3.980 3 C -0.339 4.339 4 C 0.391 3.609 5 O -0.457 6.457 6 N -0.368 5.368 7 C 0.040 3.960 8 H 0.106 0.894 9 C -0.214 4.214 10 C -0.008 4.008 11 N -0.366 5.366 12 C 0.324 3.676 13 O -0.436 6.436 14 C -0.265 4.265 15 S 0.056 5.944 16 C -0.677 4.677 17 H 0.078 0.922 18 C -0.161 4.161 19 N -0.557 5.557 20 Si 0.737 3.263 21 H -0.186 1.186 22 H -0.185 1.185 23 H -0.159 1.159 24 C -0.103 4.103 25 N -0.149 5.149 26 N -0.143 5.143 27 C -0.056 4.056 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.246 0.754 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.227 0.773 42 H 0.113 0.887 43 H 0.134 0.866 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.841 -13.061 23.861 31.478 hybrid contribution -0.099 -0.572 -1.208 1.340 sum -15.940 -13.633 22.653 30.873 Atomic orbital electron populations 1.20728 0.84434 1.05345 1.04827 1.21958 0.95995 0.86328 0.93678 1.20064 0.93460 0.93478 1.26947 1.17245 0.85054 0.84060 0.74546 1.90720 1.17588 1.84675 1.52677 1.45788 1.10165 1.05236 1.75624 1.21105 0.97100 0.79632 0.98191 0.89396 1.22059 1.02593 1.02446 0.94265 1.21773 0.98290 0.98305 0.82439 1.45730 1.39620 1.33308 1.17982 1.19838 0.79208 0.82751 0.85790 1.90698 1.53111 1.27519 1.72273 1.23284 1.02646 1.04009 0.96551 1.84652 1.49683 1.42431 1.17646 1.22471 1.26423 1.16900 1.01889 0.92152 1.25596 0.97067 0.99654 0.93824 1.70022 1.35673 1.41791 1.08187 0.85848 0.80406 0.80419 0.79581 1.18601 1.18461 1.15899 1.24411 0.97805 0.91978 0.96063 1.77180 0.97408 1.14029 1.26267 1.48722 1.03462 1.07733 1.54402 1.22363 1.02601 0.75307 1.05332 0.88556 0.89220 0.88397 0.75409 0.91144 0.90027 0.92588 0.89817 0.90174 0.75144 0.86893 0.87252 0.91384 0.77335 0.88664 0.86580 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.57 71.24 0.68 -0.39 16 2 C 0.15 2.55 7.01 42.15 0.30 2.84 16 3 C -0.32 -6.03 6.13 -20.15 -0.12 -6.15 16 4 C 0.60 11.67 7.78 86.67 0.67 12.35 16 5 O -0.58 -14.14 14.50 -4.04 -0.06 -14.20 16 6 N -0.72 -10.47 4.51 -445.79 -2.01 -12.48 16 7 C 0.14 2.13 2.73 44.99 0.12 2.25 16 8 H 0.09 1.53 7.58 -2.39 -0.02 1.51 16 9 C -0.15 -1.97 9.48 71.98 0.68 -1.29 16 10 C 0.12 2.01 5.23 86.38 0.45 2.46 16 11 N -0.71 -15.42 5.39 -463.05 -2.50 -17.91 16 12 C 0.54 17.44 7.85 87.66 0.69 18.13 16 13 O -0.56 -22.47 15.86 -3.02 -0.05 -22.52 16 14 C -0.11 -4.20 6.16 71.24 0.44 -3.76 16 15 S -0.17 -8.51 18.55 -56.49 -1.05 -9.56 16 16 C -0.53 -30.78 10.04 67.95 0.68 -30.09 16 17 H 0.06 3.72 8.03 -2.91 -0.02 3.69 16 18 C 0.04 2.57 5.50 84.86 0.47 3.04 16 19 N -0.92 -56.16 13.97 21.65 0.30 -55.85 16 20 Si 0.92 44.87 27.74 68.60 1.90 46.78 16 21 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.24 -11.45 6.74 99.48 0.67 -10.78 16 24 C 0.08 1.48 11.50 85.65 0.99 2.46 16 25 N -0.33 -6.67 12.50 -56.28 -0.70 -7.37 16 26 N -0.36 -5.72 3.98 -354.30 -1.41 -7.13 16 27 C 0.08 0.54 11.24 127.77 1.44 1.97 16 28 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.09 1.41 6.50 -2.39 -0.02 1.39 16 30 H 0.10 0.53 7.05 -2.39 -0.02 0.51 16 31 H 0.41 4.70 7.56 -92.71 -0.70 3.99 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.41 7.42 8.14 -92.71 -0.75 6.67 16 38 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 39 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 40 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.21 2.36 7.50 -2.91 -0.02 2.33 16 42 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.12 0.14 7.02 -2.39 -0.02 0.12 16 44 H 0.10 0.60 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -81.94 387.27 1.47 -80.48 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -0.45 Total: 15.95 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 7.48 Total: 3.82 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -6.32 Total: -100.75 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.11 Total: -36.72 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.78 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.56 kcal Total: -81.94 1.47 -80.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737550364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.587 kcal (2) G-P(sol) polarization free energy of solvation -81.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds