Wall clock time and date at job start Sat Apr 11 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33320 * 126.11041 * 2 1 4 4 C 1.30853 * 109.68546 * 180.26879 * 3 2 1 5 5 N 1.34498 * 109.16655 * 359.73210 * 4 3 2 6 6 H 0.96993 * 126.47482 * 179.97438 * 5 4 3 7 7 C 1.36665 * 126.10483 * 179.80374 * 2 1 3 8 8 C 1.46763 * 126.84272 * 0.02562 * 7 2 1 9 9 O 1.21677 * 120.00136 * 359.97438 * 8 7 2 10 10 N 1.34784 * 119.99737 * 179.71143 * 8 7 2 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47277 * 180.02562 * 12 11 10 14 14 H 1.08995 * 109.47361 * 54.99504 * 13 12 11 15 15 C 1.53002 * 109.46970 * 175.00268 * 13 12 11 16 16 N 1.46502 * 109.46613 * 294.99704 * 13 12 11 17 17 C 1.34781 * 119.99523 * 155.00283 * 16 13 12 18 18 O 1.21279 * 120.00323 * 359.97438 * 17 16 13 19 19 C 1.50694 * 119.99927 * 180.02562 * 17 16 13 20 20 S 1.80995 * 109.47478 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00344 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00027 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99872 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99841 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99993 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47157 * 90.00279 * 25 23 21 27 27 H 1.48496 * 109.46961 * 210.00140 * 25 23 21 28 28 H 1.48494 * 109.47400 * 330.00081 * 25 23 21 29 29 H 1.09004 * 109.47417 * 270.19695 * 1 2 3 30 30 H 1.09007 * 109.46573 * 30.19396 * 1 2 3 31 31 H 1.08995 * 109.47251 * 150.19209 * 1 2 3 32 32 H 1.08001 * 125.42107 * 179.70289 * 4 3 2 33 33 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 35 35 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 36 36 H 1.09004 * 109.47330 * 300.00096 * 12 11 10 37 37 H 1.09005 * 109.47124 * 59.99892 * 12 11 10 38 38 H 1.08989 * 109.47700 * 59.99904 * 15 13 12 39 39 H 1.09005 * 109.46801 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.46895 * 299.98990 * 15 13 12 41 41 H 0.97000 * 120.00671 * 335.00290 * 16 13 12 42 42 H 1.09007 * 109.47281 * 300.00030 * 19 17 16 43 43 H 1.09002 * 109.47426 * 59.99700 * 19 17 16 44 44 H 0.96997 * 119.99510 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0058 5 7 3.6122 -0.6364 -0.0038 6 1 4.4188 -1.1750 -0.0073 7 6 2.3123 -1.1042 0.0038 8 6 1.8820 -2.5073 0.0081 9 8 0.6961 -2.7799 0.0090 10 7 2.8003 -3.4938 0.0056 11 6 2.3708 -4.8944 0.0105 12 6 3.6002 -5.8049 0.0071 13 6 3.1516 -7.2677 0.0115 14 1 2.4781 -7.4438 -0.8272 15 6 4.3754 -8.1769 -0.1176 16 7 2.4555 -7.5612 1.2667 17 6 1.5558 -8.5633 1.3200 18 8 1.3221 -9.2218 0.3287 19 6 0.8393 -8.8648 2.6110 20 16 -0.2951 -10.2529 2.3616 21 6 -0.9779 -10.3848 3.9805 22 1 -0.6556 -9.7094 4.7592 23 6 -1.9294 -11.3574 4.2553 24 7 -2.4391 -11.4562 5.4649 25 14 -2.4863 -12.5259 2.9086 26 1 -1.6171 -13.7300 2.9072 27 1 -3.8933 -12.9315 3.1558 28 1 -2.3914 -11.8454 1.5922 29 1 -0.3634 0.0035 1.0277 30 1 -0.3633 0.8883 -0.5169 31 1 -0.3633 -0.8917 -0.5108 32 1 4.3971 1.3743 -0.0117 33 1 3.7456 -3.2765 0.0014 34 1 1.7772 -5.0893 0.9037 35 1 1.7687 -5.0929 -0.8763 36 1 4.1942 -5.6102 -0.8859 37 1 4.2019 -5.6064 0.8940 38 1 5.0489 -8.0009 0.7211 39 1 4.0558 -9.2190 -0.1149 40 1 4.8933 -7.9586 -1.0516 41 1 2.6421 -7.0343 2.0595 42 1 1.5681 -9.1241 3.3790 43 1 0.2752 -7.9873 2.9270 44 1 -3.1037 -12.1361 5.6569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737666570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:05 Heat of formation + Delta-G solvation = -29.934169 kcal Electronic energy + Delta-G solvation = -25922.576711 eV Core-core repulsion = 22001.695843 eV Total energy + Delta-G solvation = -3920.880869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.69478 -39.91779 -39.40115 -36.79653 -35.00517 -33.63937 -32.43398 -32.07344 -31.52797 -29.63289 -28.64264 -27.48818 -25.60906 -24.43674 -23.07152 -21.78294 -21.51645 -20.49726 -20.18966 -19.26953 -17.86614 -16.78137 -16.65135 -16.48951 -16.23415 -15.98288 -15.29945 -15.08935 -14.93764 -14.90463 -14.42814 -14.24245 -13.70830 -13.69024 -13.42265 -13.30746 -13.08728 -13.05034 -12.79011 -12.43034 -12.33784 -12.10264 -11.92512 -11.68440 -11.25953 -11.23065 -11.00325 -10.88272 -10.59942 -10.50026 -10.26194 -9.85241 -9.63435 -9.54075 -9.07917 -8.98919 -8.93518 -8.50036 -6.91287 -6.28263 -3.99987 0.82197 2.33061 2.38275 2.62430 2.75012 2.90306 2.94317 3.28601 3.33875 3.51251 3.64021 3.97755 4.25430 4.29985 4.33760 4.47626 4.58483 4.63625 4.74725 4.78304 5.07774 5.10808 5.14153 5.18177 5.22872 5.29417 5.43686 5.51319 5.53380 5.58513 5.64224 5.73019 5.75698 5.85702 5.90678 6.00706 6.04902 6.19380 6.50895 6.64891 6.91511 7.43768 7.55404 7.71080 7.94829 8.42338 8.45843 9.17878 10.80984 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.002034 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.786570 B =13760.525684 C =15086.812003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.102 3.898 3 N -0.499 5.499 4 C 0.222 3.778 5 N -0.557 5.557 6 H 0.421 0.579 7 C -0.097 4.097 8 C 0.593 3.407 9 O -0.513 6.513 10 N -0.731 5.731 11 C 0.117 3.883 12 C -0.138 4.138 13 C 0.147 3.853 14 H 0.092 0.908 15 C -0.163 4.163 16 N -0.734 5.734 17 C 0.533 3.467 18 O -0.518 6.518 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.216 0.784 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.918 22.823 -12.155 32.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 N -0.219 5.219 4 C -0.062 4.062 5 N -0.163 5.163 6 H 0.260 0.740 7 C -0.212 4.212 8 C 0.379 3.621 9 O -0.387 6.387 10 N -0.383 5.383 11 C -0.006 4.006 12 C -0.176 4.176 13 C 0.042 3.958 14 H 0.110 0.890 15 C -0.221 4.221 16 N -0.389 5.389 17 C 0.319 3.681 18 O -0.392 6.392 19 C -0.276 4.276 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.225 0.775 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.232 0.768 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.191 22.190 -13.689 31.792 hybrid contribution 1.497 -0.455 1.335 2.057 sum 19.688 21.735 -12.354 31.822 Atomic orbital electron populations 1.20345 0.86276 1.03872 1.03371 1.21160 0.97078 0.86560 0.98434 1.70177 1.00481 1.30470 1.20811 1.25190 0.97502 0.81995 1.01541 1.43320 1.07880 1.08847 1.56237 0.74029 1.20926 0.84370 0.95043 1.20860 1.16821 0.85939 0.82551 0.76770 1.90886 1.15909 1.82731 1.49203 1.45881 1.09019 1.06762 1.76655 1.21474 0.97001 0.78288 1.03799 1.22115 0.97539 0.94285 1.03662 1.20779 0.94392 0.92213 0.88451 0.88952 1.22174 0.97194 1.01110 1.01657 1.46094 1.43528 1.36306 1.13000 1.20276 0.78401 0.79170 0.90239 1.90699 1.63475 1.48419 1.36581 1.23287 1.02243 1.04662 0.97394 1.84778 1.48775 1.39237 1.18707 1.22315 1.28065 1.22320 0.94183 0.89399 1.24723 0.94604 0.96451 0.95588 1.69940 1.28134 1.34024 1.19574 0.86728 0.78807 0.82294 0.83982 1.19243 1.19934 1.15905 0.90452 0.90904 0.89130 0.76720 0.77465 0.90454 0.90670 0.89743 0.90588 0.92469 0.91395 0.91839 0.76761 0.88560 0.88435 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.88 36.01 0.36 -0.43 16 2 C 0.10 1.05 7.15 -82.51 -0.59 0.46 16 3 N -0.50 -4.73 11.20 -10.64 -0.12 -4.85 16 4 C 0.22 1.15 13.01 -90.57 -1.18 -0.03 16 5 N -0.56 -2.45 6.07 -10.79 -0.07 -2.51 16 6 H 0.42 0.18 8.32 -40.82 -0.34 -0.16 16 7 C -0.10 -0.84 7.08 -82.14 -0.58 -1.42 16 8 C 0.59 5.90 7.79 -12.81 -0.10 5.80 16 9 O -0.51 -7.16 14.82 5.21 0.08 -7.08 16 10 N -0.73 -4.77 5.55 -61.59 -0.34 -5.11 16 11 C 0.12 0.92 5.56 -4.05 -0.02 0.90 16 12 C -0.14 -0.75 4.87 -26.73 -0.13 -0.88 16 13 C 0.15 1.35 2.58 -67.92 -0.17 1.17 16 14 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 15 C -0.16 -1.41 9.48 37.16 0.35 -1.05 16 16 N -0.73 -8.30 4.53 -53.80 -0.24 -8.54 16 17 C 0.53 9.00 7.81 -10.99 -0.09 8.92 16 18 O -0.52 -10.71 15.52 5.56 0.09 -10.62 16 19 C -0.13 -2.38 6.16 36.00 0.22 -2.16 16 20 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 21 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 22 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 23 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.69 13.97 55.49 0.78 -25.91 16 25 Si 0.86 21.90 27.74 -169.99 -4.71 17.18 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.09 0.98 6.48 -51.93 -0.34 0.64 16 32 H 0.22 0.12 8.06 -52.49 -0.42 -0.30 16 33 H 0.39 1.15 7.72 -40.82 -0.31 0.84 16 34 H 0.08 0.75 7.75 -51.93 -0.40 0.35 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.43 8.14 -51.94 -0.42 0.00 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.40 3.47 8.60 -40.82 -0.35 3.12 16 42 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 43 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -39.28 388.06 -8.78 -48.06 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.37 Total: -0.10 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.72 Total: -0.78 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.00 Total: -46.93 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.16 Total: -17.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.28 -8.78 -48.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737666570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.125 kcal (2) G-P(sol) polarization free energy of solvation -39.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds