Wall clock time and date at job start Sat Apr 11 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33320 * 126.11041 * 2 1 4 4 C 1.30853 * 109.68546 * 180.26879 * 3 2 1 5 5 N 1.34498 * 109.16655 * 359.73210 * 4 3 2 6 6 H 0.96993 * 126.47482 * 179.97438 * 5 4 3 7 7 C 1.36665 * 126.10483 * 179.80374 * 2 1 3 8 8 C 1.46763 * 126.84272 * 0.02562 * 7 2 1 9 9 O 1.21677 * 120.00136 * 359.97438 * 8 7 2 10 10 N 1.34784 * 119.99737 * 179.71143 * 8 7 2 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47277 * 180.02562 * 12 11 10 14 14 H 1.08995 * 109.47361 * 54.99504 * 13 12 11 15 15 C 1.53002 * 109.46970 * 175.00268 * 13 12 11 16 16 N 1.46502 * 109.46613 * 294.99704 * 13 12 11 17 17 C 1.34781 * 119.99523 * 155.00283 * 16 13 12 18 18 O 1.21279 * 120.00323 * 359.97438 * 17 16 13 19 19 C 1.50694 * 119.99927 * 180.02562 * 17 16 13 20 20 S 1.80995 * 109.47478 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00344 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00027 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99872 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99841 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99993 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47157 * 90.00279 * 25 23 21 27 27 H 1.48496 * 109.46961 * 210.00140 * 25 23 21 28 28 H 1.48494 * 109.47400 * 330.00081 * 25 23 21 29 29 H 1.09004 * 109.47417 * 270.19695 * 1 2 3 30 30 H 1.09007 * 109.46573 * 30.19396 * 1 2 3 31 31 H 1.08995 * 109.47251 * 150.19209 * 1 2 3 32 32 H 1.08001 * 125.42107 * 179.70289 * 4 3 2 33 33 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 35 35 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 36 36 H 1.09004 * 109.47330 * 300.00096 * 12 11 10 37 37 H 1.09005 * 109.47124 * 59.99892 * 12 11 10 38 38 H 1.08989 * 109.47700 * 59.99904 * 15 13 12 39 39 H 1.09005 * 109.46801 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.46895 * 299.98990 * 15 13 12 41 41 H 0.97000 * 120.00671 * 335.00290 * 16 13 12 42 42 H 1.09007 * 109.47281 * 300.00030 * 19 17 16 43 43 H 1.09002 * 109.47426 * 59.99700 * 19 17 16 44 44 H 0.96997 * 119.99510 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0058 5 7 3.6122 -0.6364 -0.0038 6 1 4.4188 -1.1750 -0.0073 7 6 2.3123 -1.1042 0.0038 8 6 1.8820 -2.5073 0.0081 9 8 0.6961 -2.7799 0.0090 10 7 2.8003 -3.4938 0.0056 11 6 2.3708 -4.8944 0.0105 12 6 3.6002 -5.8049 0.0071 13 6 3.1516 -7.2677 0.0115 14 1 2.4781 -7.4438 -0.8272 15 6 4.3754 -8.1769 -0.1176 16 7 2.4555 -7.5612 1.2667 17 6 1.5558 -8.5633 1.3200 18 8 1.3221 -9.2218 0.3287 19 6 0.8393 -8.8648 2.6110 20 16 -0.2951 -10.2529 2.3616 21 6 -0.9779 -10.3848 3.9805 22 1 -0.6556 -9.7094 4.7592 23 6 -1.9294 -11.3574 4.2553 24 7 -2.4391 -11.4562 5.4649 25 14 -2.4863 -12.5259 2.9086 26 1 -1.6171 -13.7300 2.9072 27 1 -3.8933 -12.9315 3.1558 28 1 -2.3914 -11.8454 1.5922 29 1 -0.3634 0.0035 1.0277 30 1 -0.3633 0.8883 -0.5169 31 1 -0.3633 -0.8917 -0.5108 32 1 4.3971 1.3743 -0.0117 33 1 3.7456 -3.2765 0.0014 34 1 1.7772 -5.0893 0.9037 35 1 1.7687 -5.0929 -0.8763 36 1 4.1942 -5.6102 -0.8859 37 1 4.2019 -5.6064 0.8940 38 1 5.0489 -8.0009 0.7211 39 1 4.0558 -9.2190 -0.1149 40 1 4.8933 -7.9586 -1.0516 41 1 2.6421 -7.0343 2.0595 42 1 1.5681 -9.1241 3.3790 43 1 0.2752 -7.9873 2.9270 44 1 -3.1037 -12.1361 5.6569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737666570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:04 Heat of formation + Delta-G solvation = -60.751844 kcal Electronic energy + Delta-G solvation = -25923.913066 eV Core-core repulsion = 22001.695843 eV Total energy + Delta-G solvation = -3922.217223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.23120 -40.92570 -40.36274 -37.72225 -35.84454 -34.68368 -34.23587 -33.09872 -32.23466 -30.55411 -29.76909 -28.13257 -27.86055 -25.09375 -23.65401 -22.63609 -22.16978 -21.62041 -20.83672 -19.96581 -19.72504 -18.00944 -17.51835 -17.13470 -17.11655 -16.98522 -16.82205 -16.41699 -16.09871 -15.67327 -15.44453 -15.15633 -15.00015 -14.75832 -14.69653 -14.41942 -14.03371 -13.94829 -13.77750 -13.39432 -13.34898 -13.14945 -13.08238 -13.01575 -12.63135 -12.47138 -12.42515 -11.93645 -11.87310 -11.56679 -11.18104 -11.05094 -10.98925 -10.94809 -10.54846 -10.35406 -10.12348 -9.53329 -9.00394 -8.52719 -6.23333 0.21314 0.98729 1.29993 1.46083 1.55598 1.58173 1.81583 1.83558 2.10990 2.19916 2.22506 2.27084 2.71213 2.85409 3.53017 3.68518 3.72656 3.85278 3.94565 4.05316 4.12431 4.21802 4.28319 4.42218 4.45465 4.47219 4.61213 4.68113 4.76760 4.81404 4.87303 4.92993 4.98891 5.03521 5.12037 5.26993 5.34091 5.51475 5.53775 5.69544 6.10124 6.30057 6.42655 6.47949 6.91620 6.92413 7.05250 7.21897 8.59733 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.002034 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.786570 B =13760.525684 C =15086.812003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.073 3.927 3 N -0.541 5.541 4 C 0.244 3.756 5 N -0.536 5.536 6 H 0.443 0.557 7 C -0.106 4.106 8 C 0.589 3.411 9 O -0.564 6.564 10 N -0.709 5.709 11 C 0.118 3.882 12 C -0.118 4.118 13 C 0.142 3.858 14 H 0.067 0.933 15 C -0.157 4.157 16 N -0.709 5.709 17 C 0.537 3.463 18 O -0.561 6.561 19 C -0.114 4.114 20 S -0.176 6.176 21 C -0.529 4.529 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.917 5.917 25 Si 0.915 3.085 26 H -0.261 1.261 27 H -0.259 1.259 28 H -0.238 1.238 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.414 0.586 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.088 0.912 41 H 0.415 0.585 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.645 24.228 -13.119 36.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 N -0.261 5.261 4 C -0.041 4.041 5 N -0.143 5.143 6 H 0.285 0.715 7 C -0.223 4.223 8 C 0.376 3.624 9 O -0.442 6.442 10 N -0.361 5.361 11 C -0.006 4.006 12 C -0.156 4.156 13 C 0.038 3.962 14 H 0.086 0.914 15 C -0.216 4.216 16 N -0.364 5.364 17 C 0.322 3.678 18 O -0.439 6.439 19 C -0.264 4.264 20 S 0.051 5.949 21 C -0.677 4.677 22 H 0.080 0.920 23 C -0.161 4.161 24 N -0.555 5.555 25 Si 0.737 3.263 26 H -0.185 1.185 27 H -0.184 1.184 28 H -0.162 1.162 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.281 0.719 33 H 0.251 0.749 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.107 0.893 41 H 0.252 0.748 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.031 23.618 -14.634 35.459 hybrid contribution 0.506 -0.710 1.653 1.869 sum 22.538 22.908 -12.981 34.659 Atomic orbital electron populations 1.20243 0.87226 1.03223 1.02912 1.21271 0.97302 0.87769 0.99767 1.70143 1.02306 1.30844 1.22851 1.26121 0.97419 0.82524 0.98020 1.43183 1.07177 1.08911 1.55048 0.71460 1.20615 0.86008 0.93928 1.21708 1.17067 0.85612 0.83537 0.76134 1.90863 1.18149 1.83550 1.51677 1.45610 1.09751 1.05636 1.75126 1.21377 0.97989 0.79357 1.01855 1.22013 0.96563 0.90378 1.06661 1.20999 0.94022 0.95067 0.86159 0.91443 1.22122 0.96963 0.98563 1.03910 1.45907 1.41508 1.34170 1.14787 1.19882 0.79168 0.80158 0.88606 1.90688 1.65253 1.50455 1.37528 1.23293 1.01482 1.02143 0.99528 1.84690 1.50824 1.42965 1.16468 1.22465 1.28179 1.21686 0.95338 0.92044 1.25591 0.94783 0.98073 0.97696 1.70019 1.29012 1.35130 1.21317 0.85850 0.79116 0.80262 0.81042 1.18508 1.18367 1.16186 0.90898 0.90405 0.90801 0.71939 0.74891 0.92510 0.92887 0.86635 0.87588 0.90540 0.94955 0.89312 0.74816 0.86812 0.87345 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.88 71.24 0.70 -0.95 16 2 C 0.07 1.50 7.15 41.96 0.30 1.80 16 3 N -0.54 -9.51 11.20 -187.59 -2.10 -11.61 16 4 C 0.24 1.70 13.01 180.33 2.35 4.04 16 5 N -0.54 -2.92 6.07 -188.04 -1.14 -4.06 16 6 H 0.44 -1.66 8.32 -92.71 -0.77 -2.43 16 7 C -0.11 -1.71 7.08 40.01 0.28 -1.42 16 8 C 0.59 11.38 7.79 86.47 0.67 12.06 16 9 O -0.56 -16.48 14.82 -4.28 -0.06 -16.54 16 10 N -0.71 -7.59 5.55 -467.00 -2.59 -10.18 16 11 C 0.12 1.64 5.56 86.38 0.48 2.12 16 12 C -0.12 -0.81 4.87 30.59 0.15 -0.66 16 13 C 0.14 2.27 2.58 44.99 0.12 2.39 16 14 H 0.07 1.48 7.58 -2.39 -0.02 1.46 16 15 C -0.16 -2.26 9.48 71.98 0.68 -1.57 16 16 N -0.71 -14.73 4.53 -442.52 -2.00 -16.74 16 17 C 0.54 17.82 7.81 87.65 0.68 18.50 16 18 O -0.56 -23.44 15.52 -3.03 -0.05 -23.48 16 19 C -0.11 -4.27 6.16 71.23 0.44 -3.83 16 20 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 21 C -0.53 -31.21 10.04 67.96 0.68 -30.53 16 22 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 23 C 0.04 2.61 5.50 84.86 0.47 3.08 16 24 N -0.92 -56.48 13.97 21.65 0.30 -56.18 16 25 Si 0.92 45.65 27.74 68.60 1.90 47.55 16 26 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 29 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.07 1.77 6.48 -2.39 -0.02 1.76 16 32 H 0.27 -1.10 8.06 -2.91 -0.02 -1.12 16 33 H 0.41 0.70 7.72 -92.71 -0.72 -0.01 16 34 H 0.06 1.05 7.75 -2.38 -0.02 1.03 16 35 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16 37 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.41 6.04 8.60 -92.71 -0.80 5.24 16 42 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 44 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -91.71 388.06 -0.05 -91.77 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -1.26 Total: 4.48 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 8.01 Total: 5.03 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -7.54 Total: -98.76 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.11 Total: -40.03 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -91.71 -0.05 -91.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737666570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.015 kcal (2) G-P(sol) polarization free energy of solvation -91.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds