Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30442 * 125.99156 * 2 1 4 4 N 1.39935 * 108.89992 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.75574 * 180.02562 * 4 3 2 6 6 C 1.34258 * 108.48699 * 359.74738 * 4 3 2 7 7 C 1.38045 * 107.41898 * 0.40088 * 6 4 3 8 8 C 1.47430 * 126.41458 * 179.87128 * 7 6 4 9 9 O 1.21601 * 120.00214 * 152.21676 * 8 7 6 10 10 N 1.34781 * 120.00111 * 332.22159 * 8 7 6 11 11 C 1.46500 * 119.99637 * 3.08414 * 10 8 7 12 12 C 1.46495 * 120.00204 * 183.09432 * 10 8 7 13 13 C 1.52996 * 109.47640 * 89.99445 * 12 10 8 14 14 N 1.46495 * 109.47640 * 179.97438 * 13 12 10 15 15 C 1.34779 * 120.00480 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99733 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99859 * 180.02562 * 15 14 13 18 18 S 1.81007 * 109.46747 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00022 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99612 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99709 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00434 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99401 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47220 * 90.00036 * 23 21 19 25 25 H 1.48500 * 109.47053 * 209.99412 * 23 21 19 26 26 H 1.48495 * 109.47583 * 329.99755 * 23 21 19 27 27 H 1.08997 * 109.47218 * 269.97370 * 1 2 3 28 28 H 1.09006 * 109.47159 * 29.97233 * 1 2 3 29 29 H 1.08997 * 109.47483 * 149.97331 * 1 2 3 30 30 H 1.09005 * 109.47427 * 89.97474 * 5 4 3 31 31 H 1.08998 * 109.47179 * 209.97037 * 5 4 3 32 32 H 1.08999 * 109.47297 * 329.97155 * 5 4 3 33 33 H 1.08009 * 126.28889 * 180.25060 * 6 4 3 34 34 H 1.09005 * 109.47326 * 84.88117 * 11 10 8 35 35 H 1.09005 * 109.47266 * 204.88099 * 11 10 8 36 36 H 1.08996 * 109.47884 * 324.88034 * 11 10 8 37 37 H 1.09004 * 109.46920 * 209.99549 * 12 10 8 38 38 H 1.09004 * 109.46886 * 329.99335 * 12 10 8 39 39 H 1.09004 * 109.47049 * 300.00024 * 13 12 10 40 40 H 1.09004 * 109.47071 * 60.00003 * 13 12 10 41 41 H 0.97002 * 119.99663 * 0.02562 * 14 13 12 42 42 H 1.08993 * 109.47545 * 299.99644 * 17 15 14 43 43 H 1.08999 * 109.47447 * 60.00532 * 17 15 14 44 44 H 0.97000 * 120.00493 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0006 5 6 4.7787 1.5289 -0.0003 6 6 3.6438 -0.6980 0.0047 7 6 2.3371 -1.1433 -0.0006 8 6 1.8914 -2.5486 -0.0004 9 8 0.8172 -2.8456 0.4860 10 7 2.6745 -3.5041 -0.5392 11 6 3.9974 -3.1570 -1.0641 12 6 2.2027 -4.8896 -0.6001 13 6 1.4576 -5.1174 -1.9168 14 7 0.9863 -6.5031 -1.9780 15 6 0.2990 -6.9344 -3.0542 16 8 0.0710 -6.1753 -3.9721 17 6 -0.1862 -8.3597 -3.1167 18 16 -1.0689 -8.6287 -4.6739 19 6 -1.5122 -10.3236 -4.4855 20 1 -1.2261 -10.8606 -3.5933 21 6 -2.2282 -10.9688 -5.4843 22 7 -2.5765 -10.3144 -6.5719 23 14 -2.6976 -12.7658 -5.2848 24 1 -4.0214 -12.8606 -4.6184 25 1 -2.7688 -13.4101 -6.6208 26 1 -1.6760 -13.4553 -4.4565 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 5.0683 1.7480 1.0275 31 1 5.6058 1.0391 -0.5141 32 1 4.5309 2.4578 -0.5138 33 1 4.5297 -1.3159 0.0094 34 1 4.7240 -3.1639 -0.2516 35 1 4.2909 -3.8853 -1.8202 36 1 3.9619 -2.1636 -1.5112 37 1 3.0552 -5.5666 -0.5432 38 1 1.5300 -5.0815 0.2359 39 1 0.6051 -4.4405 -1.9737 40 1 2.1303 -4.9256 -2.7528 41 1 1.1684 -7.1102 -1.2436 42 1 0.6662 -9.0366 -3.0603 43 1 -0.8587 -8.5517 -2.2806 44 1 -3.0772 -10.7652 -7.2698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737709329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = 15.858353 kcal Electronic energy + Delta-G solvation = -26002.200914 eV Core-core repulsion = 22083.305759 eV Total energy + Delta-G solvation = -3918.895156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.91360 -39.79926 -38.96574 -36.26648 -34.47291 -34.38196 -32.40679 -31.60860 -30.14295 -29.71716 -28.28443 -27.27936 -26.01293 -25.44454 -23.55926 -22.08731 -20.87261 -20.29234 -19.45993 -17.83387 -17.52506 -16.82612 -16.50854 -16.42073 -16.07342 -15.62309 -15.31205 -15.03971 -14.78487 -14.75291 -14.14445 -13.91945 -13.84081 -13.72579 -13.57150 -13.24698 -13.12423 -12.91660 -12.71672 -12.53234 -12.50780 -12.23082 -12.21858 -12.05238 -11.38052 -11.16583 -11.04178 -11.00069 -10.74703 -10.14548 -9.79836 -9.74441 -9.42228 -9.10643 -9.04784 -8.96422 -8.86915 -8.20625 -6.47263 -6.19204 -3.89630 1.10261 1.83688 1.88551 2.50461 3.04157 3.13388 3.14452 3.24362 3.30613 3.37079 3.81711 3.88803 4.08866 4.22762 4.39598 4.50658 4.55627 4.66494 4.69018 4.81100 4.84683 4.92715 4.96856 5.08601 5.15916 5.18110 5.22960 5.25744 5.48158 5.61331 5.65261 5.67322 5.74449 5.86992 5.93114 6.14150 6.17210 6.19360 6.34441 6.62786 7.00474 7.21748 7.61947 7.71993 7.95779 8.37663 8.64452 9.26036 10.88235 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029191 B = 0.001715 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.981925 B =16319.014174 C =16573.928781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.133 3.867 3 N -0.301 5.301 4 N -0.363 5.363 5 C 0.096 3.904 6 C 0.091 3.909 7 C -0.286 4.286 8 C 0.594 3.406 9 O -0.529 6.529 10 N -0.612 5.612 11 C 0.069 3.931 12 C 0.108 3.892 13 C 0.107 3.893 14 N -0.737 5.737 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.189 0.811 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.989 21.009 16.978 33.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 N -0.123 5.123 4 N -0.141 5.141 5 C -0.045 4.045 6 C -0.060 4.060 7 C -0.301 4.301 8 C 0.384 3.616 9 O -0.405 6.405 10 N -0.346 5.346 11 C -0.074 4.074 12 C -0.015 4.015 13 C -0.018 4.018 14 N -0.392 5.392 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.206 0.794 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.127 23.525 15.515 34.058 hybrid contribution 0.429 -3.153 1.473 3.507 sum 19.556 20.371 16.988 32.955 Atomic orbital electron populations 1.20286 0.85498 1.03776 1.03791 1.22472 0.97313 0.88607 0.95016 1.77218 0.85942 1.22566 1.26622 1.48349 1.06211 1.04801 1.54759 1.22001 0.83697 0.94848 1.03910 1.23535 0.99146 0.85195 0.98114 1.20162 0.92299 0.94268 1.23350 1.17329 0.83631 0.83555 0.77133 1.90801 1.22057 1.82131 1.45529 1.47491 1.17703 1.08134 1.61263 1.22175 0.83460 1.02727 0.99066 1.21584 0.99758 0.81711 0.98480 1.21571 0.99113 0.83907 0.97220 1.45835 1.59051 1.12243 1.22084 1.20302 0.76860 0.89640 0.81320 1.90706 1.55019 1.56686 1.36640 1.23526 1.04351 0.94630 1.07832 1.85413 1.68265 1.14180 1.15554 1.22872 1.41617 0.96203 1.07673 0.90904 1.24988 0.95081 0.99063 0.94458 1.70015 1.36391 1.36755 1.07131 0.86167 0.78915 0.82736 0.77663 1.20266 1.20778 1.19714 0.89788 0.90779 0.89436 0.90227 0.88986 0.88735 0.79389 0.92370 0.90247 0.90545 0.89741 0.88805 0.91203 0.91658 0.76789 0.89182 0.89113 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 9.82 36.01 0.35 -0.39 16 2 C 0.13 1.48 7.26 -82.03 -0.60 0.88 16 3 N -0.30 -3.21 12.50 33.89 0.42 -2.78 16 4 N -0.36 -2.62 3.98 -67.60 -0.27 -2.89 16 5 C 0.10 0.24 11.44 59.84 0.68 0.92 16 6 C 0.09 0.60 9.17 -16.56 -0.15 0.45 16 7 C -0.29 -2.88 5.64 -105.07 -0.59 -3.47 16 8 C 0.59 6.81 7.53 -12.52 -0.09 6.72 16 9 O -0.53 -7.89 15.33 5.28 0.08 -7.81 16 10 N -0.61 -5.32 2.87 -182.85 -0.53 -5.85 16 11 C 0.07 0.32 8.88 59.85 0.53 0.85 16 12 C 0.11 0.96 5.52 -4.05 -0.02 0.94 16 13 C 0.11 1.33 6.00 -4.05 -0.02 1.31 16 14 N -0.74 -10.00 5.56 -60.30 -0.33 -10.33 16 15 C 0.53 10.18 7.85 -10.99 -0.09 10.10 16 16 O -0.52 -12.12 15.86 5.56 0.09 -12.03 16 17 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.11 5.49 -17.44 -0.10 2.01 16 22 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 23 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.97 7.37 -51.93 -0.38 0.59 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.19 0.47 5.52 -52.48 -0.29 0.19 16 34 H 0.06 0.13 7.30 -51.93 -0.38 -0.24 16 35 H 0.08 0.32 8.03 -51.93 -0.42 -0.09 16 36 H 0.08 0.34 5.54 -51.93 -0.29 0.05 16 37 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 38 H 0.09 0.93 7.38 -51.93 -0.38 0.55 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -40.53 388.07 -7.02 -47.55 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.25 Total: -1.05 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 0.42 Total: 2.33 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.03 Total: -47.48 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.17 Total: -19.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -40.53 -7.02 -47.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737709329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.412 kcal (2) G-P(sol) polarization free energy of solvation -40.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds