Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30442 * 125.99156 * 2 1 4 4 N 1.39935 * 108.89992 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.75574 * 180.02562 * 4 3 2 6 6 C 1.34258 * 108.48699 * 359.74738 * 4 3 2 7 7 C 1.38045 * 107.41898 * 0.40088 * 6 4 3 8 8 C 1.47430 * 126.41458 * 179.87128 * 7 6 4 9 9 O 1.21601 * 120.00214 * 152.21676 * 8 7 6 10 10 N 1.34781 * 120.00111 * 332.22159 * 8 7 6 11 11 C 1.46500 * 119.99637 * 3.08414 * 10 8 7 12 12 C 1.46495 * 120.00204 * 183.09432 * 10 8 7 13 13 C 1.52996 * 109.47640 * 89.99445 * 12 10 8 14 14 N 1.46495 * 109.47640 * 179.97438 * 13 12 10 15 15 C 1.34779 * 120.00480 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99733 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99859 * 180.02562 * 15 14 13 18 18 S 1.81007 * 109.46747 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00022 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99612 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99709 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00434 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99401 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47220 * 90.00036 * 23 21 19 25 25 H 1.48500 * 109.47053 * 209.99412 * 23 21 19 26 26 H 1.48495 * 109.47583 * 329.99755 * 23 21 19 27 27 H 1.08997 * 109.47218 * 269.97370 * 1 2 3 28 28 H 1.09006 * 109.47159 * 29.97233 * 1 2 3 29 29 H 1.08997 * 109.47483 * 149.97331 * 1 2 3 30 30 H 1.09005 * 109.47427 * 89.97474 * 5 4 3 31 31 H 1.08998 * 109.47179 * 209.97037 * 5 4 3 32 32 H 1.08999 * 109.47297 * 329.97155 * 5 4 3 33 33 H 1.08009 * 126.28889 * 180.25060 * 6 4 3 34 34 H 1.09005 * 109.47326 * 84.88117 * 11 10 8 35 35 H 1.09005 * 109.47266 * 204.88099 * 11 10 8 36 36 H 1.08996 * 109.47884 * 324.88034 * 11 10 8 37 37 H 1.09004 * 109.46920 * 209.99549 * 12 10 8 38 38 H 1.09004 * 109.46886 * 329.99335 * 12 10 8 39 39 H 1.09004 * 109.47049 * 300.00024 * 13 12 10 40 40 H 1.09004 * 109.47071 * 60.00003 * 13 12 10 41 41 H 0.97002 * 119.99663 * 0.02562 * 14 13 12 42 42 H 1.08993 * 109.47545 * 299.99644 * 17 15 14 43 43 H 1.08999 * 109.47447 * 60.00532 * 17 15 14 44 44 H 0.97000 * 120.00493 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0006 5 6 4.7787 1.5289 -0.0003 6 6 3.6438 -0.6980 0.0047 7 6 2.3371 -1.1433 -0.0006 8 6 1.8914 -2.5486 -0.0004 9 8 0.8172 -2.8456 0.4860 10 7 2.6745 -3.5041 -0.5392 11 6 3.9974 -3.1570 -1.0641 12 6 2.2027 -4.8896 -0.6001 13 6 1.4576 -5.1174 -1.9168 14 7 0.9863 -6.5031 -1.9780 15 6 0.2990 -6.9344 -3.0542 16 8 0.0710 -6.1753 -3.9721 17 6 -0.1862 -8.3597 -3.1167 18 16 -1.0689 -8.6287 -4.6739 19 6 -1.5122 -10.3236 -4.4855 20 1 -1.2261 -10.8606 -3.5933 21 6 -2.2282 -10.9688 -5.4843 22 7 -2.5765 -10.3144 -6.5719 23 14 -2.6976 -12.7658 -5.2848 24 1 -4.0214 -12.8606 -4.6184 25 1 -2.7688 -13.4101 -6.6208 26 1 -1.6760 -13.4553 -4.4565 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 5.0683 1.7480 1.0275 31 1 5.6058 1.0391 -0.5141 32 1 4.5309 2.4578 -0.5138 33 1 4.5297 -1.3159 0.0094 34 1 4.7240 -3.1639 -0.2516 35 1 4.2909 -3.8853 -1.8202 36 1 3.9619 -2.1636 -1.5112 37 1 3.0552 -5.5666 -0.5432 38 1 1.5300 -5.0815 0.2359 39 1 0.6051 -4.4405 -1.9737 40 1 2.1303 -4.9256 -2.7528 41 1 1.1684 -7.1102 -1.2436 42 1 0.6662 -9.0366 -3.0603 43 1 -0.8587 -8.5517 -2.2806 44 1 -3.0772 -10.7652 -7.2698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737709329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = -15.657266 kcal Electronic energy + Delta-G solvation = -26003.567534 eV Core-core repulsion = 22083.305759 eV Total energy + Delta-G solvation = -3920.261776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.54138 -40.79980 -40.23202 -37.16285 -35.65042 -34.94780 -34.57588 -32.50561 -31.26028 -30.39993 -29.32708 -27.88099 -27.64199 -26.56759 -24.45156 -22.71424 -21.95020 -21.35715 -20.18558 -19.79820 -18.16393 -17.91720 -17.54679 -17.39028 -16.87097 -16.78932 -16.63724 -16.54529 -15.98907 -15.61441 -15.29594 -15.19085 -14.72933 -14.51344 -14.45875 -14.34066 -14.18848 -13.77373 -13.57277 -13.40737 -13.25789 -13.17205 -13.15516 -12.97693 -12.88463 -12.75438 -12.59391 -12.36124 -11.83753 -11.72659 -11.13410 -11.10469 -10.92335 -10.37239 -10.26665 -10.17576 -9.83551 -9.58917 -8.66243 -8.33529 -6.11961 0.54580 1.05855 1.25662 1.42294 1.43731 1.48231 1.57344 1.59900 1.84999 2.28046 2.29593 2.49169 3.00665 3.32802 3.34564 3.66550 3.82713 3.85083 4.02593 4.04354 4.15395 4.28494 4.32269 4.36913 4.40183 4.44036 4.47040 4.52315 4.66745 4.68279 4.72952 4.77845 4.87651 4.90451 4.94172 4.95477 5.31036 5.43088 5.43348 5.54046 5.90813 6.21033 6.32588 6.48530 6.55460 7.07639 7.18001 7.23546 8.75771 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029191 B = 0.001715 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.981925 B =16319.014174 C =16573.928781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.109 3.891 3 N -0.332 5.332 4 N -0.359 5.359 5 C 0.084 3.916 6 C 0.120 3.880 7 C -0.320 4.320 8 C 0.589 3.411 9 O -0.579 6.579 10 N -0.609 5.609 11 C 0.058 3.942 12 C 0.117 3.883 13 C 0.112 3.888 14 N -0.708 5.708 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.128 4.128 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.256 1.256 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.236 0.764 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.420 0.580 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.524 19.894 18.841 36.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 N -0.155 5.155 4 N -0.137 5.137 5 C -0.054 4.054 6 C -0.033 4.033 7 C -0.335 4.335 8 C 0.379 3.621 9 O -0.459 6.459 10 N -0.341 5.341 11 C -0.083 4.083 12 C -0.006 4.006 13 C -0.013 4.013 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.279 4.279 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.103 0.897 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.180 1.180 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.257 0.743 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.739 22.431 17.426 36.385 hybrid contribution -0.513 -2.659 0.954 2.871 sum 22.226 19.771 18.380 34.967 Atomic orbital electron populations 1.20191 0.86085 1.03118 1.03592 1.22607 0.97635 0.89570 0.95953 1.77128 0.87829 1.22941 1.27633 1.48770 1.05995 1.05790 1.53107 1.22457 0.82858 0.94676 1.05449 1.24108 0.99111 0.85140 0.94895 1.20197 0.93860 0.93330 1.26114 1.17642 0.83215 0.84525 0.76721 1.90762 1.24242 1.82939 1.47999 1.47583 1.18778 1.07443 1.60271 1.22522 0.81838 1.03285 1.00700 1.21537 1.00726 0.82861 0.95523 1.21621 0.98074 0.82016 0.99632 1.45519 1.56769 1.13167 1.20858 1.20125 0.77161 0.88809 0.81972 1.90696 1.57362 1.57663 1.38935 1.23362 1.04623 0.96202 1.03718 1.85624 1.70275 1.15293 1.21629 1.23214 1.41770 0.96124 1.08252 0.89737 1.26144 0.94739 1.04470 0.93869 1.70185 1.37336 1.39082 1.08239 0.84935 0.78956 0.75997 0.77960 1.19453 1.20301 1.18018 0.89818 0.89979 0.91386 0.88777 0.85242 0.88948 0.74834 0.88736 0.89072 0.90228 0.85579 0.89890 0.94796 0.91518 0.74257 0.86569 0.87220 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 9.82 71.24 0.70 -0.89 16 2 C 0.11 2.51 7.26 43.51 0.32 2.83 16 3 N -0.33 -7.03 12.50 -46.68 -0.58 -7.61 16 4 N -0.36 -4.38 3.98 -367.78 -1.46 -5.84 16 5 C 0.08 0.14 11.44 127.77 1.46 1.60 16 6 C 0.12 1.23 9.17 84.28 0.77 2.01 16 7 C -0.32 -6.30 5.64 -20.15 -0.11 -6.42 16 8 C 0.59 13.48 7.53 86.66 0.65 14.13 16 9 O -0.58 -18.24 15.33 -4.03 -0.06 -18.30 16 10 N -0.61 -9.39 2.87 -850.66 -2.44 -11.83 16 11 C 0.06 0.31 8.88 127.77 1.13 1.45 16 12 C 0.12 1.83 5.52 86.38 0.48 2.30 16 13 C 0.11 2.69 6.00 86.38 0.52 3.21 16 14 N -0.71 -18.14 5.56 -463.07 -2.57 -20.71 16 15 C 0.53 20.23 7.85 87.66 0.69 20.91 16 16 O -0.57 -27.46 15.86 -3.03 -0.05 -27.51 16 17 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 18 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 19 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16 20 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 23 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.07 1.74 7.37 -2.39 -0.02 1.72 16 30 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.24 -0.07 5.52 -2.91 -0.02 -0.08 16 34 H 0.09 -0.12 7.30 -2.38 -0.02 -0.14 16 35 H 0.09 0.34 8.03 -2.38 -0.02 0.32 16 36 H 0.08 0.41 5.54 -2.39 -0.01 0.40 16 37 H 0.13 0.98 8.07 -2.38 -0.02 0.96 16 38 H 0.08 1.54 7.38 -2.38 -0.02 1.52 16 39 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.42 7.26 8.47 -92.71 -0.79 6.48 16 42 H 0.12 4.03 8.14 -2.40 -0.02 4.01 16 43 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -95.44 388.07 2.38 -93.06 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.25 Total: 12.19 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 8.16 Total: 6.92 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -6.78 Total: -102.29 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.11 Total: -45.81 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -95.44 2.38 -93.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737709329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.400 kcal (2) G-P(sol) polarization free energy of solvation -95.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds