Wall clock time and date at job start Sat Apr 11 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35365 * 126.38903 * 2 1 4 4 C 1.41495 * 105.50448 * 180.15602 * 3 2 1 5 5 C 1.47710 * 126.51746 * 179.89841 * 4 3 2 6 6 O 1.21569 * 119.99875 * 5.98312 * 5 4 3 7 7 N 1.34775 * 120.00367 * 185.97358 * 5 4 3 8 8 C 1.46502 * 119.99402 * 5.38544 * 7 5 4 9 9 C 1.46495 * 120.00260 * 185.10122 * 7 5 4 10 10 C 1.53004 * 109.47064 * 270.27547 * 9 7 5 11 11 N 1.46507 * 109.47023 * 179.97438 * 10 9 7 12 12 C 1.34766 * 119.99968 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00232 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99898 * 180.02562 * 12 11 10 15 15 S 1.80997 * 109.46873 * 179.97438 * 14 12 11 16 16 C 1.76208 * 99.99802 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99749 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31635 * 119.99737 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00488 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47281 * 90.00103 * 20 18 16 22 22 H 1.48504 * 109.47402 * 209.99985 * 20 18 16 23 23 H 1.48498 * 109.47488 * 330.00568 * 20 18 16 24 24 N 1.31812 * 106.96346 * 359.64366 * 4 3 2 25 25 N 1.28465 * 110.07111 * 0.22026 * 24 4 3 26 26 C 1.46503 * 124.87832 * 179.97438 * 25 24 4 27 27 H 1.08995 * 109.46975 * 270.23629 * 1 2 3 28 28 H 1.09002 * 109.47355 * 30.23868 * 1 2 3 29 29 H 1.09003 * 109.46971 * 150.23735 * 1 2 3 30 30 H 1.08001 * 127.24549 * 0.04326 * 3 2 1 31 31 H 1.09008 * 109.46561 * 275.07627 * 8 7 5 32 32 H 1.08995 * 109.47842 * 35.08069 * 8 7 5 33 33 H 1.09003 * 109.47270 * 155.08870 * 8 7 5 34 34 H 1.08996 * 109.47047 * 30.28080 * 9 7 5 35 35 H 1.09004 * 109.46736 * 150.28382 * 9 7 5 36 36 H 1.08996 * 109.47624 * 300.00180 * 10 9 7 37 37 H 1.09004 * 109.46662 * 60.00790 * 10 9 7 38 38 H 0.97008 * 119.99591 * 0.02562 * 11 10 9 39 39 H 1.08996 * 109.46946 * 299.99852 * 14 12 11 40 40 H 1.08997 * 109.47255 * 59.99994 * 14 12 11 41 41 H 0.97000 * 119.99803 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.46966 * 90.03206 * 26 25 24 43 43 H 1.09001 * 109.46698 * 210.02781 * 26 25 24 44 44 H 1.08994 * 109.47621 * 330.03112 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5853 -0.0037 5 6 4.8765 1.3811 -0.0073 6 8 4.8247 2.5907 0.1026 7 7 6.0693 0.7662 -0.1321 8 6 6.1271 -0.6761 -0.3824 9 6 7.3077 1.5411 -0.0237 10 6 7.7098 2.0562 -1.4072 11 7 8.9481 2.8317 -1.2986 12 6 9.4939 3.3871 -2.3986 13 8 8.9603 3.2446 -3.4784 14 6 10.7679 4.1843 -2.2870 15 16 11.2435 4.7937 -3.9236 16 6 12.7183 5.6644 -3.5092 17 1 13.0584 5.6933 -2.4846 18 6 13.4421 6.3140 -4.4994 19 7 14.5435 6.9650 -4.1898 20 14 12.8534 6.2646 -6.2715 21 1 11.9490 7.4150 -6.5249 22 1 14.0223 6.3437 -7.1839 23 1 12.1205 4.9962 -6.5145 24 7 3.5419 -0.7297 0.0022 25 7 2.3080 -1.0871 0.0045 26 6 1.8376 -2.4745 0.0104 27 1 -0.3633 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5102 30 1 2.0058 2.1260 0.0006 31 1 6.0662 -1.2119 0.5650 32 1 5.2923 -0.9682 -1.0193 33 1 7.0661 -0.9214 -0.8787 34 1 7.1503 2.3858 0.6469 35 1 8.1003 0.9059 0.3719 36 1 7.8673 1.2115 -2.0778 37 1 6.9173 2.6914 -1.8028 38 1 9.3750 2.9453 -0.4350 39 1 10.6105 5.0287 -1.6161 40 1 11.5606 3.5491 -1.8918 41 1 15.0496 7.4186 -4.8819 42 1 1.7212 -2.8143 1.0396 43 1 0.8780 -2.5350 -0.5030 44 1 2.5636 -3.1066 -0.5008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737709703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:10 Heat of formation + Delta-G solvation = 18.654319 kcal Electronic energy + Delta-G solvation = -25847.969217 eV Core-core repulsion = 21929.195304 eV Total energy + Delta-G solvation = -3918.773914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.13120 -39.98175 -39.07165 -36.24161 -34.59050 -33.89958 -33.10885 -32.40075 -30.66440 -28.76120 -28.01773 -27.32270 -26.64137 -25.57332 -23.98775 -22.24100 -21.21097 -20.50742 -19.21740 -17.83688 -17.41101 -17.00259 -16.88823 -16.56636 -16.28852 -15.70309 -15.38465 -15.10580 -14.87934 -14.64210 -14.24342 -13.84502 -13.81953 -13.67893 -13.48464 -13.42539 -13.17861 -13.16199 -13.03441 -12.83620 -12.76139 -12.54971 -12.22036 -12.12956 -11.39441 -11.22875 -11.05680 -10.97080 -10.57889 -10.38257 -9.82560 -9.53121 -9.51086 -9.33497 -8.98393 -8.97729 -8.91380 -8.45432 -6.87354 -6.25291 -3.96605 1.19550 1.68863 1.95813 2.51285 2.89542 3.04247 3.11166 3.36427 3.43544 3.54332 3.74909 3.83553 4.11586 4.27862 4.37011 4.41437 4.49094 4.69996 4.72981 4.73972 4.81223 4.93461 4.94466 5.01805 5.13841 5.19555 5.20175 5.27949 5.30800 5.40107 5.49343 5.57609 5.70039 5.83446 5.85419 5.99145 6.06620 6.20063 6.32572 6.57133 6.99840 7.45251 7.65222 7.89377 7.97874 8.45462 8.55029 9.21075 10.83930 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.001686 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.295696 B =16606.520635 C =16799.980564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.009 3.991 3 C -0.177 4.177 4 C -0.012 4.012 5 C 0.603 3.397 6 O -0.524 6.524 7 N -0.603 5.603 8 C 0.084 3.916 9 C 0.108 3.892 10 C 0.107 3.893 11 N -0.734 5.734 12 C 0.532 3.468 13 O -0.519 6.519 14 C -0.123 4.123 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 N -0.258 5.258 25 N -0.285 5.285 26 C 0.085 3.915 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.270 0.730 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.845 -22.805 13.816 39.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.172 4.172 5 C 0.389 3.611 6 O -0.397 6.397 7 N -0.337 5.337 8 C -0.059 4.059 9 C -0.015 4.015 10 C -0.018 4.018 11 N -0.389 5.389 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.274 4.274 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 N -0.094 5.094 25 N -0.073 5.073 26 C -0.056 4.056 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.180 0.820 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.007 -23.393 12.016 39.154 hybrid contribution 0.386 0.875 0.924 1.330 sum -28.621 -22.518 12.940 38.647 Atomic orbital electron populations 1.20363 0.86556 1.03959 1.03345 1.21422 0.95504 0.86655 1.07873 1.21535 0.90417 0.99743 1.08743 1.21766 0.94954 0.89752 1.10689 1.16992 0.81529 0.86190 0.76393 1.90833 1.86231 1.12999 1.49685 1.47520 1.05135 1.09580 1.71434 1.21990 1.03229 0.78797 1.01871 1.21625 0.85636 0.97046 0.97229 1.21598 0.87160 0.96038 0.97052 1.45789 1.26730 1.55500 1.10909 1.20269 0.85585 0.78763 0.83653 1.90704 1.62532 1.58957 1.27134 1.23273 0.96821 1.02104 1.05180 1.84800 1.32513 1.67770 1.06539 1.22328 1.08365 1.37156 0.98996 0.89364 1.24709 0.93881 0.93501 0.99210 1.69943 1.15130 1.32380 1.34294 0.86732 0.79408 0.81439 0.84261 1.19199 1.19972 1.15935 1.73735 1.01290 1.14732 1.19646 1.45443 1.03019 1.07567 1.51307 1.22173 1.01682 0.77224 1.04500 0.90271 0.89429 0.91154 0.81989 0.92204 0.89770 0.91084 0.88964 0.89452 0.91516 0.91002 0.76612 0.88387 0.88396 0.91980 0.89634 0.88652 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.10 36.01 0.36 0.12 16 2 C 0.01 0.06 6.92 -82.21 -0.57 -0.50 16 3 C -0.18 -1.71 10.73 -39.37 -0.42 -2.14 16 4 C -0.01 -0.14 6.75 -82.77 -0.56 -0.70 16 5 C 0.60 7.74 7.67 -12.39 -0.09 7.65 16 6 O -0.52 -8.36 16.57 5.31 0.09 -8.27 16 7 N -0.60 -6.32 2.87 -182.74 -0.53 -6.84 16 8 C 0.08 0.66 9.31 59.85 0.56 1.21 16 9 C 0.11 1.06 5.45 -4.04 -0.02 1.03 16 10 C 0.11 1.37 6.00 -4.04 -0.02 1.35 16 11 N -0.73 -9.99 5.56 -60.29 -0.33 -10.32 16 12 C 0.53 9.95 7.85 -10.99 -0.09 9.87 16 13 O -0.52 -11.86 15.86 5.55 0.09 -11.77 16 14 C -0.12 -2.45 6.16 36.01 0.22 -2.23 16 15 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 16 C -0.52 -15.28 10.04 30.94 0.31 -14.97 16 17 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 18 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 19 N -0.88 -26.92 13.97 55.49 0.78 -26.15 16 20 Si 0.86 22.20 27.74 -169.99 -4.71 17.49 16 21 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 24 N -0.26 -2.38 8.76 33.42 0.29 -2.08 16 25 N -0.28 -1.92 3.70 -63.85 -0.24 -2.16 16 26 C 0.08 0.16 11.11 59.85 0.66 0.83 16 27 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.08 7.00 -51.93 -0.36 -0.28 16 30 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.08 0.71 5.94 -51.93 -0.31 0.40 16 33 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 34 H 0.09 0.96 7.51 -51.93 -0.39 0.57 16 35 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 39 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 40 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 41 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.09 -0.03 6.95 -51.93 -0.36 -0.39 16 44 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -39.69 387.75 -6.88 -46.57 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -6.41 Total: -0.85 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 0.25 Total: 4.26 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.03 Total: -47.55 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.05 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.69 -6.88 -46.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737709703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.221 kcal (2) G-P(sol) polarization free energy of solvation -39.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds