Wall clock time and date at job start Sat Apr 11 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35365 * 126.38903 * 2 1 4 4 C 1.41495 * 105.50448 * 180.15602 * 3 2 1 5 5 C 1.47710 * 126.51746 * 179.89841 * 4 3 2 6 6 O 1.21569 * 119.99875 * 5.98312 * 5 4 3 7 7 N 1.34775 * 120.00367 * 185.97358 * 5 4 3 8 8 C 1.46502 * 119.99402 * 5.38544 * 7 5 4 9 9 C 1.46495 * 120.00260 * 185.10122 * 7 5 4 10 10 C 1.53004 * 109.47064 * 270.27547 * 9 7 5 11 11 N 1.46507 * 109.47023 * 179.97438 * 10 9 7 12 12 C 1.34766 * 119.99968 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00232 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99898 * 180.02562 * 12 11 10 15 15 S 1.80997 * 109.46873 * 179.97438 * 14 12 11 16 16 C 1.76208 * 99.99802 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99749 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31635 * 119.99737 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00488 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47281 * 90.00103 * 20 18 16 22 22 H 1.48504 * 109.47402 * 209.99985 * 20 18 16 23 23 H 1.48498 * 109.47488 * 330.00568 * 20 18 16 24 24 N 1.31812 * 106.96346 * 359.64366 * 4 3 2 25 25 N 1.28465 * 110.07111 * 0.22026 * 24 4 3 26 26 C 1.46503 * 124.87832 * 179.97438 * 25 24 4 27 27 H 1.08995 * 109.46975 * 270.23629 * 1 2 3 28 28 H 1.09002 * 109.47355 * 30.23868 * 1 2 3 29 29 H 1.09003 * 109.46971 * 150.23735 * 1 2 3 30 30 H 1.08001 * 127.24549 * 0.04326 * 3 2 1 31 31 H 1.09008 * 109.46561 * 275.07627 * 8 7 5 32 32 H 1.08995 * 109.47842 * 35.08069 * 8 7 5 33 33 H 1.09003 * 109.47270 * 155.08870 * 8 7 5 34 34 H 1.08996 * 109.47047 * 30.28080 * 9 7 5 35 35 H 1.09004 * 109.46736 * 150.28382 * 9 7 5 36 36 H 1.08996 * 109.47624 * 300.00180 * 10 9 7 37 37 H 1.09004 * 109.46662 * 60.00790 * 10 9 7 38 38 H 0.97008 * 119.99591 * 0.02562 * 11 10 9 39 39 H 1.08996 * 109.46946 * 299.99852 * 14 12 11 40 40 H 1.08997 * 109.47255 * 59.99994 * 14 12 11 41 41 H 0.97000 * 119.99803 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.46966 * 90.03206 * 26 25 24 43 43 H 1.09001 * 109.46698 * 210.02781 * 26 25 24 44 44 H 1.08994 * 109.47621 * 330.03112 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5853 -0.0037 5 6 4.8765 1.3811 -0.0073 6 8 4.8247 2.5907 0.1026 7 7 6.0693 0.7662 -0.1321 8 6 6.1271 -0.6761 -0.3824 9 6 7.3077 1.5411 -0.0237 10 6 7.7098 2.0562 -1.4072 11 7 8.9481 2.8317 -1.2986 12 6 9.4939 3.3871 -2.3986 13 8 8.9603 3.2446 -3.4784 14 6 10.7679 4.1843 -2.2870 15 16 11.2435 4.7937 -3.9236 16 6 12.7183 5.6644 -3.5092 17 1 13.0584 5.6933 -2.4846 18 6 13.4421 6.3140 -4.4994 19 7 14.5435 6.9650 -4.1898 20 14 12.8534 6.2646 -6.2715 21 1 11.9490 7.4150 -6.5249 22 1 14.0223 6.3437 -7.1839 23 1 12.1205 4.9962 -6.5145 24 7 3.5419 -0.7297 0.0022 25 7 2.3080 -1.0871 0.0045 26 6 1.8376 -2.4745 0.0104 27 1 -0.3633 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5102 30 1 2.0058 2.1260 0.0006 31 1 6.0662 -1.2119 0.5650 32 1 5.2923 -0.9682 -1.0193 33 1 7.0661 -0.9214 -0.8787 34 1 7.1503 2.3858 0.6469 35 1 8.1003 0.9059 0.3719 36 1 7.8673 1.2115 -2.0778 37 1 6.9173 2.6914 -1.8028 38 1 9.3750 2.9453 -0.4350 39 1 10.6105 5.0287 -1.6161 40 1 11.5606 3.5491 -1.8918 41 1 15.0496 7.4186 -4.8819 42 1 1.7212 -2.8143 1.0396 43 1 0.8780 -2.5350 -0.5030 44 1 2.5636 -3.1066 -0.5008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737709703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:10 Heat of formation + Delta-G solvation = -11.267386 kcal Electronic energy + Delta-G solvation = -25849.266720 eV Core-core repulsion = 21929.195304 eV Total energy + Delta-G solvation = -3920.071416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.72232 -41.00189 -40.44251 -37.26000 -35.72737 -34.67200 -34.49758 -33.57795 -31.95462 -29.91669 -28.52363 -27.88652 -27.81822 -27.34818 -24.87171 -23.03202 -21.97092 -21.75867 -20.13145 -19.77708 -18.09032 -17.89338 -17.68824 -17.67360 -17.32517 -17.07668 -16.73968 -16.73144 -16.08521 -15.63017 -15.30778 -15.06503 -14.94370 -14.74175 -14.58969 -14.08683 -14.03810 -13.92967 -13.69977 -13.54453 -13.41982 -13.35392 -13.32293 -13.13742 -13.02252 -12.87844 -12.65464 -12.40954 -11.87118 -11.73364 -11.35385 -11.17281 -11.08350 -10.53927 -10.23118 -10.16908 -9.92985 -9.79791 -9.00230 -8.51560 -6.22517 0.44910 0.96616 1.07449 1.31340 1.41498 1.48962 1.52726 1.56916 1.82966 2.24582 2.25196 2.38025 2.72917 2.86656 3.21719 3.69729 3.76227 3.78020 3.89927 3.98412 4.22891 4.23878 4.29314 4.34939 4.38105 4.46917 4.50451 4.58886 4.67476 4.68697 4.72718 4.78965 4.85754 4.97386 5.02101 5.08788 5.22746 5.31440 5.48253 5.70984 5.86915 6.11618 6.16947 6.41793 6.78341 6.93709 7.03208 7.15367 8.60762 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.001686 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.295696 B =16606.520635 C =16799.980564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.022 3.978 3 C -0.211 4.211 4 C -0.045 4.045 5 C 0.594 3.406 6 O -0.570 6.570 7 N -0.601 5.601 8 C 0.085 3.915 9 C 0.114 3.886 10 C 0.113 3.887 11 N -0.707 5.707 12 C 0.535 3.465 13 O -0.565 6.565 14 C -0.109 4.109 15 S -0.179 6.179 16 C -0.529 4.529 17 H 0.064 0.936 18 C 0.047 3.953 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.264 1.264 22 H -0.257 1.257 23 H -0.238 1.238 24 N -0.259 5.259 25 N -0.279 5.279 26 C 0.072 3.928 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.421 0.579 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.277 0.723 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.521 -25.576 14.483 42.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.239 4.239 4 C -0.203 4.203 5 C 0.382 3.618 6 O -0.448 6.448 7 N -0.333 5.333 8 C -0.057 4.057 9 C -0.009 4.009 10 C -0.012 4.012 11 N -0.362 5.362 12 C 0.321 3.679 13 O -0.444 6.444 14 C -0.260 4.260 15 S 0.047 5.953 16 C -0.676 4.676 17 H 0.082 0.918 18 C -0.159 4.159 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.189 1.189 22 H -0.181 1.181 23 H -0.162 1.162 24 N -0.097 5.097 25 N -0.068 5.068 26 C -0.067 4.067 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.172 0.828 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.258 0.742 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.142 0.858 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -30.666 -26.220 12.742 42.311 hybrid contribution 0.791 1.594 0.869 1.980 sum -29.874 -24.626 13.611 41.038 Atomic orbital electron populations 1.20530 0.83487 1.05393 1.04643 1.21908 0.97133 0.85768 1.05430 1.21696 0.90775 1.00552 1.10922 1.21671 0.94766 0.90694 1.13185 1.17375 0.82718 0.85911 0.75765 1.90787 1.87027 1.14879 1.52080 1.47649 1.04622 1.10647 1.70341 1.22120 1.03902 0.77091 1.02610 1.21642 0.86473 0.97746 0.95010 1.21593 0.85452 0.95108 0.99048 1.45497 1.26376 1.53769 1.10541 1.20032 0.85078 0.78740 0.84089 1.90694 1.63667 1.60906 1.29097 1.23257 0.98223 1.03180 1.01342 1.84759 1.30964 1.67804 1.11748 1.22458 1.09632 1.37499 0.98033 0.91779 1.25542 0.94032 0.93209 1.03099 1.70016 1.16213 1.33274 1.35872 0.85880 0.79437 0.81257 0.79867 1.18868 1.18142 1.16165 1.73667 1.02753 1.13561 1.19685 1.45963 1.02312 1.09269 1.49250 1.22647 1.03128 0.74656 1.06221 0.88867 0.89189 0.88550 0.82804 0.90953 0.90435 0.89275 0.89590 0.85553 0.91341 0.94306 0.74161 0.86768 0.86143 0.91358 0.87911 0.85832 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.10 71.24 0.72 0.45 16 2 C 0.02 0.28 6.92 41.40 0.29 0.57 16 3 C -0.21 -4.27 10.73 22.41 0.24 -4.03 16 4 C -0.05 -1.05 6.75 42.45 0.29 -0.76 16 5 C 0.59 15.90 7.67 86.75 0.66 16.56 16 6 O -0.57 -19.40 16.57 -3.93 -0.07 -19.47 16 7 N -0.60 -12.24 2.87 -850.34 -2.44 -14.69 16 8 C 0.08 1.18 9.31 127.77 1.19 2.37 16 9 C 0.11 2.08 5.45 86.38 0.47 2.55 16 10 C 0.11 2.83 6.00 86.38 0.52 3.34 16 11 N -0.71 -18.04 5.56 -463.04 -2.57 -20.62 16 12 C 0.54 19.49 7.85 87.66 0.69 20.18 16 13 O -0.57 -25.85 15.86 -3.04 -0.05 -25.90 16 14 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 15 S -0.18 -9.32 18.55 -56.49 -1.05 -10.36 16 16 C -0.53 -31.29 10.04 67.95 0.68 -30.61 16 17 H 0.06 3.97 8.03 -2.91 -0.02 3.95 16 18 C 0.05 2.78 5.50 84.86 0.47 3.25 16 19 N -0.92 -56.38 13.97 21.65 0.30 -56.08 16 20 Si 0.91 45.90 27.74 68.60 1.90 47.80 16 21 H -0.26 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.24 -11.96 6.74 99.48 0.67 -11.29 16 24 N -0.26 -4.57 8.76 -48.18 -0.42 -4.99 16 25 N -0.28 -3.26 3.70 -355.92 -1.32 -4.58 16 26 C 0.07 0.05 11.11 127.77 1.42 1.47 16 27 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.10 -0.16 7.00 -2.39 -0.02 -0.18 16 30 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 1.23 5.94 -2.39 -0.01 1.21 16 33 H 0.09 0.93 8.03 -2.39 -0.02 0.91 16 34 H 0.09 1.73 7.51 -2.39 -0.02 1.71 16 35 H 0.13 1.35 8.07 -2.38 -0.02 1.33 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.42 7.40 8.47 -92.70 -0.79 6.61 16 39 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 40 H 0.12 4.14 8.14 -2.40 -0.02 4.12 16 41 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.10 -0.21 8.14 -2.38 -0.02 -0.23 16 43 H 0.12 -0.58 6.95 -2.39 -0.02 -0.60 16 44 H 0.10 -0.03 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -89.71 387.75 2.57 -87.15 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.20 Total: 10.17 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 8.07 Total: 11.56 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -6.45 Total: -100.94 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.11 Total: -45.37 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.05 Total: -10.36 kcal Total: -89.71 2.57 -87.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737709703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.878 kcal (2) G-P(sol) polarization free energy of solvation -89.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds