Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.90095 * 2 1 4 4 N 1.40080 * 108.20533 * 180.02562 * 3 2 1 5 5 H 0.97002 * 126.03969 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92794 * 0.02562 * 4 3 2 7 7 C 1.50703 * 126.12738 * 179.97438 * 6 4 3 8 8 C 1.35315 * 107.74654 * 0.22852 * 6 4 3 9 9 C 1.50694 * 126.04050 * 179.76869 * 8 6 4 10 10 C 1.50701 * 109.47098 * 90.00124 * 9 8 6 11 11 O 1.21277 * 119.99924 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00038 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00154 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47310 * 179.97438 * 13 12 10 15 15 N 1.46501 * 109.46993 * 179.97438 * 14 13 12 16 16 C 1.34784 * 119.99848 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99698 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99824 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.46806 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99693 * 180.02562 * 19 18 16 21 21 H 1.07992 * 120.00077 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99655 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00116 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99775 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47195 * 90.00061 * 24 22 20 26 26 H 1.48502 * 109.46809 * 209.99822 * 24 22 20 27 27 H 1.48493 * 109.46971 * 329.99598 * 24 22 20 28 28 H 1.08996 * 109.47162 * 89.97082 * 1 2 3 29 29 H 1.08998 * 109.46766 * 209.97206 * 1 2 3 30 30 H 1.09005 * 109.46597 * 329.97141 * 1 2 3 31 31 H 1.09002 * 109.47152 * 90.02651 * 7 6 4 32 32 H 1.09001 * 109.46980 * 330.02751 * 7 6 4 33 33 H 1.09004 * 109.47113 * 210.02732 * 7 6 4 34 34 H 1.09004 * 109.46795 * 209.99972 * 9 8 6 35 35 H 1.08998 * 109.47253 * 329.99922 * 9 8 6 36 36 H 0.97000 * 120.00099 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.46946 * 299.99821 * 13 12 10 38 38 H 1.08998 * 109.47386 * 59.99370 * 13 12 10 39 39 H 1.08997 * 109.46999 * 299.99292 * 14 13 12 40 40 H 1.08998 * 109.47133 * 59.99555 * 14 13 12 41 41 H 0.96997 * 120.00431 * 359.97438 * 15 14 13 42 42 H 1.08997 * 109.47126 * 299.99883 * 18 16 15 43 43 H 1.08998 * 109.47112 * 60.00211 * 18 16 15 44 44 H 0.97004 * 120.00258 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3909 1.2079 -0.0004 6 6 3.6142 -0.7154 -0.0015 7 6 4.8350 -1.5990 -0.0030 8 6 2.3271 -1.1331 -0.0067 9 6 1.8600 -2.5657 -0.0143 10 6 1.7006 -3.0498 1.4039 11 8 1.9431 -2.3048 2.3297 12 7 1.2897 -4.3108 1.6434 13 6 1.1342 -4.7812 3.0221 14 6 0.6600 -6.2358 3.0143 15 7 0.5052 -6.7063 4.3930 16 6 0.0933 -7.9671 4.6326 17 8 -0.1486 -8.7122 3.7067 18 6 -0.0654 -8.4513 6.0508 19 16 -0.6265 -10.1721 6.0416 20 6 -0.7258 -10.4708 7.7753 21 1 -0.4715 -9.6873 8.4736 22 6 -1.1308 -11.7131 8.2433 23 7 -1.4413 -12.6679 7.3921 24 14 -1.2368 -12.0296 10.0813 25 1 -2.5961 -11.6802 10.5662 26 1 -0.9681 -13.4647 10.3527 27 1 -0.2302 -11.1957 10.7859 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 5.1298 -1.8131 1.0244 32 1 5.6510 -1.0905 -0.5166 33 1 4.6074 -2.5325 -0.5177 34 1 0.9024 -2.6329 -0.5309 35 1 2.5947 -3.1848 -0.5292 36 1 1.0961 -4.9068 0.9030 37 1 2.0914 -4.7135 3.5392 38 1 0.3989 -4.1624 3.5364 39 1 -0.2973 -6.3031 2.4975 40 1 1.3950 -6.8548 2.4999 41 1 0.6990 -6.1105 5.1335 42 1 0.8924 -8.3846 6.5668 43 1 -0.7996 -7.8321 6.5661 44 1 -1.7240 -13.5363 7.7192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740481385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = -15.463567 kcal Electronic energy + Delta-G solvation = -25318.225373 eV Core-core repulsion = 21397.971996 eV Total energy + Delta-G solvation = -3920.253376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.78154 -39.85435 -39.14167 -35.96204 -33.95493 -33.81546 -33.36502 -32.44243 -30.55428 -29.60503 -28.22360 -27.74546 -26.26941 -25.48049 -22.94882 -21.36232 -20.53778 -20.32192 -19.64300 -17.98148 -17.70073 -17.39392 -16.57333 -16.20092 -15.86315 -15.58850 -15.35051 -15.28871 -14.81422 -14.53518 -14.09548 -13.96771 -13.79797 -13.72732 -13.70653 -13.37784 -13.18642 -12.79013 -12.70552 -12.58924 -12.57891 -12.31084 -12.05695 -12.00833 -11.65337 -11.07290 -11.03861 -10.85851 -10.77789 -10.22809 -9.83532 -9.56753 -9.50325 -9.42258 -9.09069 -9.00252 -8.75073 -8.26399 -6.52136 -6.23175 -3.94014 1.50134 2.23470 2.38507 2.49253 2.72626 3.02354 3.15987 3.21841 3.28479 3.36356 3.77758 4.19052 4.20038 4.26605 4.39533 4.55040 4.62228 4.73099 4.83103 4.88352 4.98281 5.05151 5.11164 5.12233 5.18820 5.21314 5.28069 5.36583 5.55513 5.56744 5.59053 5.63540 5.75495 5.77052 5.86506 6.04769 6.11696 6.30582 6.48637 6.93092 7.15899 7.35820 7.58056 7.60229 7.95087 8.33914 8.52368 9.22350 10.84238 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.032015 B = 0.001443 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.367442 B =19403.595566 C =19411.650488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.095 3.905 3 N -0.297 5.297 4 N -0.476 5.476 5 H 0.437 0.563 6 C 0.104 3.896 7 C -0.096 4.096 8 C -0.221 4.221 9 C -0.060 4.060 10 C 0.512 3.488 11 O -0.529 6.529 12 N -0.731 5.731 13 C 0.110 3.890 14 C 0.111 3.889 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.401 0.599 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.201 24.778 -17.990 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 N -0.120 5.120 4 N -0.184 5.184 5 H 0.281 0.719 6 C -0.025 4.025 7 C -0.154 4.154 8 C -0.233 4.233 9 C -0.101 4.101 10 C 0.298 3.702 11 O -0.404 6.404 12 N -0.384 5.384 13 C -0.015 4.015 14 C -0.014 4.014 15 N -0.393 5.393 16 C 0.321 3.679 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.935 25.157 -18.887 32.990 hybrid contribution 0.681 0.098 2.335 2.434 sum 10.616 25.255 -16.552 32.007 Atomic orbital electron populations 1.20201 0.86762 1.03618 1.02857 1.22161 0.96881 0.90082 0.98036 1.77289 0.86399 1.22247 1.26096 1.46086 1.07368 1.04740 1.60196 0.71884 1.20815 0.96806 0.85039 0.99802 1.20507 0.92855 0.98282 1.03797 1.18972 0.91357 0.94563 1.18396 1.19889 1.03739 0.92664 0.93772 1.20776 0.76462 0.81036 0.91903 1.90728 1.48899 1.54786 1.45955 1.45850 1.70001 1.14008 1.08588 1.21422 1.02174 0.94071 0.83808 1.21324 1.02029 0.92974 0.85047 1.45819 1.71467 1.14367 1.07620 1.20323 0.75568 0.80599 0.91459 1.90707 1.48172 1.54431 1.45697 1.23532 1.05277 1.06729 0.94895 1.85385 1.86603 1.01406 1.09951 1.22871 1.52889 1.01191 0.91496 0.90874 1.24990 0.94550 0.94991 0.99010 1.70015 1.42250 1.03712 1.34306 0.86163 0.78608 0.77654 0.83054 1.20256 1.20744 1.19694 0.90340 0.90539 0.90710 0.89792 0.90956 0.89554 0.87953 0.88266 0.76211 0.90842 0.90794 0.90935 0.90977 0.76500 0.89075 0.89063 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.12 36.00 0.36 -0.17 16 2 C 0.10 0.93 7.22 -82.40 -0.59 0.34 16 3 N -0.30 -3.23 12.70 33.67 0.43 -2.80 16 4 N -0.48 -3.90 7.36 33.48 0.25 -3.66 16 5 H 0.44 2.20 8.96 -182.61 -1.64 0.57 16 6 C 0.10 0.81 7.21 -82.26 -0.59 0.21 16 7 C -0.10 -0.42 10.22 36.01 0.37 -0.05 16 8 C -0.22 -1.89 4.59 -105.05 -0.48 -2.38 16 9 C -0.06 -0.35 5.64 -29.04 -0.16 -0.51 16 10 C 0.51 4.39 7.82 -10.98 -0.09 4.30 16 11 O -0.53 -6.93 16.03 5.56 0.09 -6.84 16 12 N -0.73 -4.92 5.56 -60.30 -0.33 -5.26 16 13 C 0.11 0.89 5.79 -4.04 -0.02 0.87 16 14 C 0.11 1.09 5.79 -4.04 -0.02 1.07 16 15 N -0.74 -9.02 5.56 -60.29 -0.33 -9.36 16 16 C 0.53 9.49 7.85 -10.98 -0.09 9.41 16 17 O -0.52 -11.21 15.86 5.55 0.09 -11.13 16 18 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 24 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.50 7.95 -51.93 -0.41 0.08 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.27 7.14 -51.93 -0.37 -0.10 16 34 H 0.10 0.39 7.95 -51.93 -0.41 -0.02 16 35 H 0.10 0.34 7.14 -51.93 -0.37 -0.04 16 36 H 0.40 1.65 8.47 -40.82 -0.35 1.31 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -39.75 394.74 -8.94 -48.69 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.67 Total: -0.29 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.90 Total: -2.53 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.74 Total: -46.26 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.18 Total: -17.96 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.75 -8.94 -48.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.224 kcal (2) G-P(sol) polarization free energy of solvation -39.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds