Wall clock time and date at job start Sat Apr 11 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.90095 * 2 1 4 4 N 1.40080 * 108.20533 * 180.02562 * 3 2 1 5 5 H 0.97002 * 126.03969 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92794 * 0.02562 * 4 3 2 7 7 C 1.50703 * 126.12738 * 179.97438 * 6 4 3 8 8 C 1.35315 * 107.74654 * 0.22852 * 6 4 3 9 9 C 1.50694 * 126.04050 * 179.76869 * 8 6 4 10 10 C 1.50701 * 109.47098 * 90.00124 * 9 8 6 11 11 O 1.21277 * 119.99924 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00038 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00154 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47310 * 179.97438 * 13 12 10 15 15 N 1.46501 * 109.46993 * 179.97438 * 14 13 12 16 16 C 1.34784 * 119.99848 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99698 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99824 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.46806 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99693 * 180.02562 * 19 18 16 21 21 H 1.07992 * 120.00077 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99655 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00116 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99775 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47195 * 90.00061 * 24 22 20 26 26 H 1.48502 * 109.46809 * 209.99822 * 24 22 20 27 27 H 1.48493 * 109.46971 * 329.99598 * 24 22 20 28 28 H 1.08996 * 109.47162 * 89.97082 * 1 2 3 29 29 H 1.08998 * 109.46766 * 209.97206 * 1 2 3 30 30 H 1.09005 * 109.46597 * 329.97141 * 1 2 3 31 31 H 1.09002 * 109.47152 * 90.02651 * 7 6 4 32 32 H 1.09001 * 109.46980 * 330.02751 * 7 6 4 33 33 H 1.09004 * 109.47113 * 210.02732 * 7 6 4 34 34 H 1.09004 * 109.46795 * 209.99972 * 9 8 6 35 35 H 1.08998 * 109.47253 * 329.99922 * 9 8 6 36 36 H 0.97000 * 120.00099 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.46946 * 299.99821 * 13 12 10 38 38 H 1.08998 * 109.47386 * 59.99370 * 13 12 10 39 39 H 1.08997 * 109.46999 * 299.99292 * 14 13 12 40 40 H 1.08998 * 109.47133 * 59.99555 * 14 13 12 41 41 H 0.96997 * 120.00431 * 359.97438 * 15 14 13 42 42 H 1.08997 * 109.47126 * 299.99883 * 18 16 15 43 43 H 1.08998 * 109.47112 * 60.00211 * 18 16 15 44 44 H 0.97004 * 120.00258 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3909 1.2079 -0.0004 6 6 3.6142 -0.7154 -0.0015 7 6 4.8350 -1.5990 -0.0030 8 6 2.3271 -1.1331 -0.0067 9 6 1.8600 -2.5657 -0.0143 10 6 1.7006 -3.0498 1.4039 11 8 1.9431 -2.3048 2.3297 12 7 1.2897 -4.3108 1.6434 13 6 1.1342 -4.7812 3.0221 14 6 0.6600 -6.2358 3.0143 15 7 0.5052 -6.7063 4.3930 16 6 0.0933 -7.9671 4.6326 17 8 -0.1486 -8.7122 3.7067 18 6 -0.0654 -8.4513 6.0508 19 16 -0.6265 -10.1721 6.0416 20 6 -0.7258 -10.4708 7.7753 21 1 -0.4715 -9.6873 8.4736 22 6 -1.1308 -11.7131 8.2433 23 7 -1.4413 -12.6679 7.3921 24 14 -1.2368 -12.0296 10.0813 25 1 -2.5961 -11.6802 10.5662 26 1 -0.9681 -13.4647 10.3527 27 1 -0.2302 -11.1957 10.7859 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 5.1298 -1.8131 1.0244 32 1 5.6510 -1.0905 -0.5166 33 1 4.6074 -2.5325 -0.5177 34 1 0.9024 -2.6329 -0.5309 35 1 2.5947 -3.1848 -0.5292 36 1 1.0961 -4.9068 0.9030 37 1 2.0914 -4.7135 3.5392 38 1 0.3989 -4.1624 3.5364 39 1 -0.2973 -6.3031 2.4975 40 1 1.3950 -6.8548 2.4999 41 1 0.6990 -6.1105 5.1335 42 1 0.8924 -8.3846 6.5668 43 1 -0.7996 -7.8321 6.5661 44 1 -1.7240 -13.5363 7.7192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001740481385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:15 Heat of formation + Delta-G solvation = -47.270718 kcal Electronic energy + Delta-G solvation = -25319.604634 eV Core-core repulsion = 21397.971996 eV Total energy + Delta-G solvation = -3921.632638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.36118 -40.75730 -40.28836 -36.90058 -34.94656 -34.56947 -34.37848 -33.92108 -31.68692 -30.33788 -29.08408 -28.42252 -27.63897 -26.82595 -23.76993 -22.18495 -21.50919 -21.08228 -20.24956 -19.83577 -18.35726 -18.09394 -17.86391 -17.04833 -16.95224 -16.85942 -16.57926 -16.29283 -15.94652 -15.67776 -15.38316 -14.77036 -14.70831 -14.47089 -14.35141 -14.30270 -14.12831 -13.92753 -13.66058 -13.23666 -13.15523 -13.15190 -12.96024 -12.87706 -12.83028 -12.74482 -12.58919 -12.50012 -11.72244 -11.46015 -11.13175 -11.09097 -10.87439 -10.26536 -10.19288 -10.18433 -10.04808 -9.33058 -8.64740 -8.33646 -6.11202 0.91921 1.26542 1.43350 1.46061 1.55924 1.60967 1.65243 1.75748 1.98596 2.07655 2.28532 2.71480 3.00674 3.34004 3.66551 3.71851 3.75949 4.02866 4.04870 4.07008 4.21013 4.28459 4.32914 4.42899 4.47242 4.54289 4.58669 4.67643 4.79919 4.82567 4.87244 4.92730 5.00039 5.05957 5.11886 5.27102 5.33341 5.43520 5.47880 5.74935 6.21112 6.45146 6.45657 6.63315 6.75091 7.08076 7.21828 7.35822 8.75445 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.032015 B = 0.001443 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.367442 B =19403.595566 C =19411.650488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.077 3.923 3 N -0.340 5.340 4 N -0.477 5.477 5 H 0.446 0.554 6 C 0.101 3.899 7 C -0.094 4.094 8 C -0.241 4.241 9 C -0.054 4.054 10 C 0.514 3.486 11 O -0.579 6.579 12 N -0.719 5.719 13 C 0.121 3.879 14 C 0.116 3.884 15 N -0.713 5.713 16 C 0.538 3.462 17 O -0.562 6.562 18 C -0.132 4.132 19 S -0.149 6.149 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.419 0.581 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.417 0.583 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.038 25.508 -17.823 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 N -0.164 5.164 4 N -0.186 5.186 5 H 0.292 0.708 6 C -0.028 4.028 7 C -0.152 4.152 8 C -0.253 4.253 9 C -0.094 4.094 10 C 0.302 3.698 11 O -0.457 6.457 12 N -0.373 5.373 13 C -0.004 4.004 14 C -0.009 4.009 15 N -0.368 5.368 16 C 0.323 3.677 17 O -0.440 6.440 18 C -0.283 4.283 19 S 0.079 5.921 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.256 0.744 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.254 0.746 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.787 25.929 -18.741 33.762 hybrid contribution 0.481 -0.005 2.211 2.263 sum 11.268 25.924 -16.530 32.746 Atomic orbital electron populations 1.20266 0.85556 1.03469 1.04006 1.22663 0.98020 0.90517 0.97722 1.77202 0.87701 1.23559 1.27910 1.46162 1.07071 1.05401 1.60011 0.70784 1.21411 0.97936 0.85045 0.98420 1.20621 0.92070 0.98598 1.03918 1.19358 0.91559 0.95574 1.18773 1.19978 1.05810 0.91457 0.92178 1.21243 0.75302 0.80744 0.92501 1.90715 1.51275 1.56143 1.47601 1.45732 1.69145 1.13877 1.08527 1.21208 1.01857 0.92607 0.84709 1.21406 1.02285 0.93879 0.83289 1.45544 1.69099 1.12565 1.09576 1.19977 0.75758 0.81880 0.90047 1.90698 1.50676 1.56103 1.46477 1.23385 1.06355 1.01591 0.96984 1.85526 1.87614 1.08232 1.10774 1.23219 1.52823 1.01807 0.91732 0.89940 1.26094 0.93850 0.94634 1.04435 1.70174 1.43348 1.04297 1.36851 0.84973 0.79093 0.77704 0.76339 1.19372 1.20300 1.18300 0.88484 0.90028 0.91443 0.90344 0.89031 0.87789 0.85697 0.85276 0.74397 0.90996 0.91172 0.90829 0.90733 0.74578 0.87142 0.87156 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.12 71.24 0.72 -0.29 16 2 C 0.08 1.48 7.22 43.10 0.31 1.79 16 3 N -0.34 -7.48 12.70 -47.38 -0.60 -8.08 16 4 N -0.48 -7.71 7.36 -48.00 -0.35 -8.06 16 5 H 0.45 4.46 8.96 -213.33 -1.91 2.55 16 6 C 0.10 1.45 7.21 41.41 0.30 1.74 16 7 C -0.09 -0.62 10.22 71.24 0.73 0.11 16 8 C -0.24 -3.81 4.59 -20.14 -0.09 -3.90 16 9 C -0.05 -0.48 5.64 29.10 0.16 -0.32 16 10 C 0.51 7.76 7.82 87.66 0.69 8.45 16 11 O -0.58 -14.63 16.03 -3.02 -0.05 -14.68 16 12 N -0.72 -7.85 5.56 -463.07 -2.57 -10.42 16 13 C 0.12 1.70 5.79 86.38 0.50 2.20 16 14 C 0.12 2.01 5.79 86.38 0.50 2.51 16 15 N -0.71 -15.85 5.56 -463.05 -2.57 -18.42 16 16 C 0.54 18.46 7.85 87.66 0.69 19.15 16 17 O -0.56 -24.37 15.86 -3.04 -0.05 -24.42 16 18 C -0.13 -5.00 6.16 71.24 0.44 -4.57 16 19 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 20 C -0.55 -30.90 9.50 67.95 0.65 -30.25 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.29 13.22 21.65 0.29 -55.00 16 24 Si 1.00 43.17 29.55 68.60 2.03 45.20 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 27 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.98 7.95 -2.39 -0.02 0.96 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.10 0.31 7.14 -2.38 -0.02 0.30 16 34 H 0.13 0.57 7.95 -2.39 -0.02 0.55 16 35 H 0.13 0.38 7.14 -2.39 -0.02 0.36 16 36 H 0.42 2.13 8.47 -92.71 -0.79 1.34 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.42 6.77 8.47 -92.71 -0.79 5.98 16 42 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 43 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -89.30 394.74 -1.41 -90.72 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -2.42 Total: 14.48 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.05 Total: -2.08 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -5.81 Total: -99.99 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.10 Total: -39.09 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -89.30 -1.41 -90.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.447 kcal (2) G-P(sol) polarization free energy of solvation -89.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds