Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35318 * 126.12357 * 2 1 4 4 C 1.39873 * 107.92125 * 180.14770 * 3 2 1 5 5 C 1.50694 * 125.90310 * 179.86759 * 4 3 2 6 6 C 1.50698 * 109.47276 * 124.71311 * 5 4 3 7 7 O 1.21274 * 120.00124 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99713 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99701 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47174 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47283 * 65.00075 * 10 9 8 12 12 C 1.52998 * 109.47292 * 185.00006 * 10 9 8 13 13 N 1.46496 * 109.47246 * 305.00324 * 10 9 8 14 14 C 1.34777 * 120.00258 * 155.00083 * 13 10 9 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 10 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 10 17 17 S 1.81003 * 109.46853 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99846 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00457 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47357 * 89.99660 * 22 20 18 24 24 H 1.48495 * 109.47496 * 209.99879 * 22 20 18 25 25 H 1.48500 * 109.46916 * 330.00121 * 22 20 18 26 26 N 1.30837 * 108.19765 * 359.60300 * 4 3 2 27 27 N 1.34943 * 126.13055 * 179.71207 * 2 1 3 28 28 H 0.97005 * 126.03918 * 359.97438 * 27 2 1 29 29 H 1.08995 * 109.47186 * 270.25989 * 1 2 3 30 30 H 1.08999 * 109.47233 * 30.26579 * 1 2 3 31 31 H 1.09007 * 109.46656 * 150.26611 * 1 2 3 32 32 H 1.08004 * 126.04479 * 0.03239 * 3 2 1 33 33 H 1.09007 * 109.46733 * 4.71296 * 5 4 3 34 34 H 1.09006 * 109.47471 * 244.71764 * 5 4 3 35 35 H 0.96998 * 120.00048 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.46987 * 60.00085 * 9 8 6 37 37 H 1.09006 * 109.47173 * 299.99977 * 9 8 6 38 38 H 1.08994 * 109.47090 * 60.00118 * 12 10 9 39 39 H 1.09001 * 109.47093 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.47121 * 299.99938 * 12 10 9 41 41 H 0.96999 * 119.99694 * 334.99473 * 13 10 9 42 42 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 43 43 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 44 44 H 0.97002 * 120.00245 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6335 0.6561 -0.0034 5 6 4.8542 1.5396 -0.0075 6 6 5.7388 1.1795 1.1582 7 8 5.4106 0.2924 1.9172 8 7 6.8953 1.8427 1.3566 9 6 7.7555 1.4922 2.4895 10 6 8.9949 2.3893 2.4854 11 1 8.6958 3.4230 2.6594 12 6 9.9518 1.9421 3.5923 13 7 9.6673 2.2874 1.1879 14 6 10.4420 3.2992 0.7490 15 8 10.5822 4.2942 1.4280 16 6 11.1342 3.1940 -0.5856 17 16 12.0908 4.7002 -0.8894 18 6 12.7742 4.3156 -2.4672 19 1 12.5459 3.3712 -2.9388 20 6 13.6067 5.2259 -3.1035 21 7 14.1168 4.9387 -4.2825 22 14 14.0033 6.8584 -2.2868 23 1 15.2195 6.7097 -1.4479 24 1 14.2439 7.8880 -3.3294 25 1 12.8615 7.2752 -1.4336 26 7 3.6334 -0.6522 0.0032 27 7 2.3026 -1.0899 0.0055 28 1 2.0056 -2.0133 0.0105 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3633 -0.8924 -0.5097 32 1 1.9740 2.1212 0.0005 33 1 4.5482 2.5824 0.0771 34 1 5.4033 1.3965 -0.9382 35 1 7.1580 2.5519 0.7493 36 1 8.0611 0.4493 2.4046 37 1 7.2068 1.6355 3.4204 38 1 10.2509 0.9086 3.4183 39 1 10.8346 2.5816 3.5897 40 1 9.4515 2.0180 4.5577 41 1 9.5550 1.4917 0.6447 42 1 11.8029 2.3332 -0.5813 43 1 10.3897 3.0719 -1.3723 44 1 14.6984 5.5750 -4.7274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747335361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = -12.397371 kcal Electronic energy + Delta-G solvation = -25779.739015 eV Core-core repulsion = 21859.618599 eV Total energy + Delta-G solvation = -3920.120416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57356 -40.05089 -39.25162 -36.43816 -33.85036 -33.66826 -32.45933 -31.98147 -31.53362 -29.27596 -28.69845 -27.32958 -26.19987 -25.63264 -22.01771 -21.46859 -20.80607 -20.48120 -19.80684 -17.99799 -17.71606 -17.21963 -16.71938 -16.53635 -15.80818 -15.59068 -15.10116 -15.07745 -14.93640 -14.39197 -14.10647 -14.02034 -13.73821 -13.47198 -13.44011 -13.24486 -13.04385 -13.01082 -12.93466 -12.81462 -12.50446 -12.17890 -12.16190 -11.95795 -11.28901 -11.21298 -11.02963 -10.82608 -10.62638 -10.11484 -9.88147 -9.60219 -9.56245 -9.31346 -9.12723 -9.01750 -8.87836 -8.53178 -6.94637 -6.30857 -4.03005 1.59148 2.35968 2.46599 2.55941 2.70868 2.88230 3.03120 3.27629 3.32209 3.48161 3.61811 4.18767 4.29984 4.30891 4.38228 4.62910 4.69189 4.72180 4.84696 4.88759 4.99442 5.06464 5.08291 5.10442 5.23013 5.32424 5.33862 5.37277 5.43427 5.47923 5.54653 5.72057 5.80377 5.85274 5.97597 6.02796 6.18840 6.31108 6.47324 6.99532 7.24177 7.43742 7.52448 7.92081 8.01996 8.39766 8.41434 9.15170 10.78326 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.001979 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.165450 B =14144.551950 C =15439.995342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.081 3.919 3 C -0.265 4.265 4 C 0.088 3.912 5 C -0.062 4.062 6 C 0.517 3.483 7 O -0.525 6.525 8 N -0.732 5.732 9 C 0.115 3.885 10 C 0.132 3.868 11 H 0.096 0.904 12 C -0.162 4.162 13 N -0.735 5.735 14 C 0.532 3.468 15 O -0.517 6.517 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.261 5.261 27 N -0.475 5.475 28 H 0.436 0.564 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.405 0.595 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.401 0.599 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.648 -10.136 10.758 29.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.295 4.295 4 C -0.079 4.079 5 C -0.104 4.104 6 C 0.302 3.698 7 O -0.400 6.400 8 N -0.385 5.385 9 C -0.010 4.010 10 C 0.027 3.973 11 H 0.114 0.886 12 C -0.221 4.221 13 N -0.390 5.390 14 C 0.318 3.682 15 O -0.391 6.391 16 C -0.276 4.276 17 S 0.085 5.915 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.084 5.084 27 N -0.184 5.184 28 H 0.280 0.720 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.240 0.760 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.235 0.765 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.824 -10.095 12.305 29.488 hybrid contribution -0.311 -0.324 -1.265 1.343 sum -25.136 -10.420 11.040 29.364 Atomic orbital electron populations 1.20455 0.87262 1.03936 1.03449 1.21095 0.94601 0.87779 1.01226 1.21095 0.91346 0.99248 1.17763 1.21471 0.94437 0.91591 1.00424 1.20046 0.92018 0.99518 0.98813 1.20376 0.81254 0.81811 0.86362 1.90748 1.72521 1.30128 1.46608 1.45967 1.21869 1.39696 1.31012 1.21673 0.89912 0.99274 0.90103 1.21154 0.91000 1.00951 0.84186 0.88647 1.22117 1.00240 1.02069 0.97637 1.46120 1.51049 1.21066 1.20798 1.20307 0.78098 0.82338 0.87424 1.90707 1.60631 1.30289 1.57452 1.23293 1.02675 1.05388 0.96234 1.84787 1.60277 1.19871 1.26528 1.22314 1.34335 1.08040 1.02288 0.89382 1.24720 0.94119 0.98310 0.94179 1.69940 1.31310 1.36439 1.13928 0.86731 0.81330 0.83471 0.80279 1.19238 1.19949 1.15931 1.77406 0.95665 1.12399 1.22914 1.46331 1.04157 1.08217 1.59722 0.71997 0.90150 0.89484 0.91122 0.83477 0.86687 0.86862 0.75986 0.90804 0.90075 0.92133 0.91109 0.91486 0.76510 0.88497 0.88430 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.43 36.00 0.38 0.03 16 2 C 0.08 0.63 7.21 -82.27 -0.59 0.04 16 3 C -0.27 -2.36 10.64 -40.01 -0.43 -2.79 16 4 C 0.09 0.95 6.02 -82.41 -0.50 0.46 16 5 C -0.06 -0.51 6.28 -29.04 -0.18 -0.69 16 6 C 0.52 5.47 7.82 -10.98 -0.09 5.39 16 7 O -0.52 -7.76 15.56 5.56 0.09 -7.68 16 8 N -0.73 -6.26 5.39 -60.29 -0.32 -6.59 16 9 C 0.11 1.00 5.23 -4.04 -0.02 0.98 16 10 C 0.13 1.28 2.73 -67.93 -0.19 1.10 16 11 H 0.10 1.06 7.58 -51.93 -0.39 0.66 16 12 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 13 N -0.74 -8.07 4.52 -53.81 -0.24 -8.31 16 14 C 0.53 8.49 7.81 -10.98 -0.09 8.41 16 15 O -0.52 -10.20 15.52 5.56 0.09 -10.11 16 16 C -0.13 -2.26 6.16 36.01 0.22 -2.04 16 17 S -0.14 -3.44 18.55 -107.50 -1.99 -5.44 16 18 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 19 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 20 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 21 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 22 Si 0.86 21.43 27.74 -169.99 -4.72 16.72 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 26 N -0.26 -3.24 12.04 33.67 0.41 -2.83 16 27 N -0.48 -4.27 7.36 33.47 0.25 -4.02 16 28 H 0.44 2.57 8.96 -182.60 -1.64 0.94 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.17 8.14 -51.92 -0.42 -0.26 16 32 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.11 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.41 2.97 8.14 -40.82 -0.33 2.64 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 42 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -38.45 392.30 -8.46 -46.91 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.79 Total: 2.94 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.91 Total: -2.06 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.86 Total: -47.20 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.72 Total: 16.72 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.45 -8.46 -46.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747335361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.517 kcal (2) G-P(sol) polarization free energy of solvation -38.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds