Wall clock time and date at job start Sat Apr 11 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35318 * 126.12357 * 2 1 4 4 C 1.39873 * 107.92125 * 180.14770 * 3 2 1 5 5 C 1.50694 * 125.90310 * 179.86759 * 4 3 2 6 6 C 1.50698 * 109.47276 * 124.71311 * 5 4 3 7 7 O 1.21274 * 120.00124 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99713 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99701 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47174 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47283 * 65.00075 * 10 9 8 12 12 C 1.52998 * 109.47292 * 185.00006 * 10 9 8 13 13 N 1.46496 * 109.47246 * 305.00324 * 10 9 8 14 14 C 1.34777 * 120.00258 * 155.00083 * 13 10 9 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 10 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 10 17 17 S 1.81003 * 109.46853 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99846 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00457 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47357 * 89.99660 * 22 20 18 24 24 H 1.48495 * 109.47496 * 209.99879 * 22 20 18 25 25 H 1.48500 * 109.46916 * 330.00121 * 22 20 18 26 26 N 1.30837 * 108.19765 * 359.60300 * 4 3 2 27 27 N 1.34943 * 126.13055 * 179.71207 * 2 1 3 28 28 H 0.97005 * 126.03918 * 359.97438 * 27 2 1 29 29 H 1.08995 * 109.47186 * 270.25989 * 1 2 3 30 30 H 1.08999 * 109.47233 * 30.26579 * 1 2 3 31 31 H 1.09007 * 109.46656 * 150.26611 * 1 2 3 32 32 H 1.08004 * 126.04479 * 0.03239 * 3 2 1 33 33 H 1.09007 * 109.46733 * 4.71296 * 5 4 3 34 34 H 1.09006 * 109.47471 * 244.71764 * 5 4 3 35 35 H 0.96998 * 120.00048 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.46987 * 60.00085 * 9 8 6 37 37 H 1.09006 * 109.47173 * 299.99977 * 9 8 6 38 38 H 1.08994 * 109.47090 * 60.00118 * 12 10 9 39 39 H 1.09001 * 109.47093 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.47121 * 299.99938 * 12 10 9 41 41 H 0.96999 * 119.99694 * 334.99473 * 13 10 9 42 42 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 43 43 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 44 44 H 0.97002 * 120.00245 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6335 0.6561 -0.0034 5 6 4.8542 1.5396 -0.0075 6 6 5.7388 1.1795 1.1582 7 8 5.4106 0.2924 1.9172 8 7 6.8953 1.8427 1.3566 9 6 7.7555 1.4922 2.4895 10 6 8.9949 2.3893 2.4854 11 1 8.6958 3.4230 2.6594 12 6 9.9518 1.9421 3.5923 13 7 9.6673 2.2874 1.1879 14 6 10.4420 3.2992 0.7490 15 8 10.5822 4.2942 1.4280 16 6 11.1342 3.1940 -0.5856 17 16 12.0908 4.7002 -0.8894 18 6 12.7742 4.3156 -2.4672 19 1 12.5459 3.3712 -2.9388 20 6 13.6067 5.2259 -3.1035 21 7 14.1168 4.9387 -4.2825 22 14 14.0033 6.8584 -2.2868 23 1 15.2195 6.7097 -1.4479 24 1 14.2439 7.8880 -3.3294 25 1 12.8615 7.2752 -1.4336 26 7 3.6334 -0.6522 0.0032 27 7 2.3026 -1.0899 0.0055 28 1 2.0056 -2.0133 0.0105 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3633 -0.8924 -0.5097 32 1 1.9740 2.1212 0.0005 33 1 4.5482 2.5824 0.0771 34 1 5.4033 1.3965 -0.9382 35 1 7.1580 2.5519 0.7493 36 1 8.0611 0.4493 2.4046 37 1 7.2068 1.6355 3.4204 38 1 10.2509 0.9086 3.4183 39 1 10.8346 2.5816 3.5897 40 1 9.4515 2.0180 4.5577 41 1 9.5550 1.4917 0.6447 42 1 11.8029 2.3332 -0.5813 43 1 10.3897 3.0719 -1.3723 44 1 14.6984 5.5750 -4.7274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747335361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:28 Heat of formation + Delta-G solvation = -42.628112 kcal Electronic energy + Delta-G solvation = -25781.049918 eV Core-core repulsion = 21859.618599 eV Total energy + Delta-G solvation = -3921.431319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21760 -41.05008 -40.30007 -37.45135 -34.79684 -34.64412 -34.30664 -32.76454 -32.38660 -30.20283 -29.76057 -27.82638 -27.82068 -26.95119 -22.98935 -22.22022 -21.61289 -21.43236 -20.54533 -19.87943 -18.38641 -18.11363 -17.94217 -17.44510 -17.08136 -16.74128 -16.45027 -16.33257 -15.86388 -15.66438 -15.02257 -14.96526 -14.74059 -14.62049 -14.35743 -14.14904 -14.05891 -13.87793 -13.64729 -13.50047 -13.33072 -13.30049 -13.04624 -13.00721 -12.94219 -12.76315 -12.57287 -12.03556 -11.83989 -11.50457 -11.15162 -10.97068 -10.96773 -10.50190 -10.27046 -10.19696 -10.09451 -9.50513 -8.96009 -8.49386 -6.19524 0.96195 1.01768 1.33448 1.48609 1.57589 1.59156 1.66831 1.71218 1.99804 2.18834 2.26810 2.36465 2.74309 2.89060 3.57848 3.60115 3.78217 3.90069 4.03255 4.10355 4.19801 4.24834 4.31695 4.45407 4.51813 4.53161 4.59756 4.72611 4.75648 4.76319 4.78791 4.88261 5.00511 5.12021 5.24700 5.27700 5.41371 5.48157 5.70016 5.72735 6.14009 6.45638 6.47524 6.51975 6.77610 6.95957 7.20640 7.25776 8.62927 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.001979 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.165450 B =14144.551950 C =15439.995342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.086 3.914 3 C -0.287 4.287 4 C 0.073 3.927 5 C -0.061 4.061 6 C 0.517 3.483 7 O -0.571 6.571 8 N -0.722 5.722 9 C 0.123 3.877 10 C 0.140 3.860 11 H 0.087 0.913 12 C -0.159 4.159 13 N -0.710 5.710 14 C 0.542 3.458 15 O -0.556 6.556 16 C -0.114 4.114 17 S -0.172 6.172 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.918 5.918 22 Si 0.915 3.085 23 H -0.264 1.264 24 H -0.261 1.261 25 H -0.234 1.234 26 N -0.314 5.314 27 N -0.478 5.478 28 H 0.445 0.555 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.413 0.587 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.415 0.585 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.438 -9.884 11.620 31.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.316 4.316 4 C -0.094 4.094 5 C -0.102 4.102 6 C 0.304 3.696 7 O -0.449 6.449 8 N -0.375 5.375 9 C -0.001 4.001 10 C 0.035 3.965 11 H 0.105 0.895 12 C -0.218 4.218 13 N -0.365 5.365 14 C 0.327 3.673 15 O -0.434 6.434 16 C -0.265 4.265 17 S 0.054 5.946 18 C -0.676 4.676 19 H 0.080 0.920 20 C -0.161 4.161 21 N -0.556 5.556 22 Si 0.737 3.263 23 H -0.189 1.189 24 H -0.185 1.185 25 H -0.158 1.158 26 N -0.138 5.138 27 N -0.188 5.188 28 H 0.290 0.710 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.185 0.815 33 H 0.162 0.838 34 H 0.146 0.854 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.251 0.749 42 H 0.127 0.873 43 H 0.135 0.865 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.624 -9.874 13.152 31.294 hybrid contribution 0.123 -0.566 -1.496 1.605 sum -26.500 -10.440 11.656 30.775 Atomic orbital electron populations 1.20593 0.84306 1.05399 1.04469 1.21760 0.96344 0.87066 0.99110 1.21474 0.90910 1.00647 1.18573 1.21952 0.95976 0.91531 0.99948 1.20190 0.91120 1.00642 0.98255 1.20767 0.81487 0.81002 0.86350 1.90730 1.73603 1.32207 1.48395 1.45901 1.21300 1.39409 1.30878 1.21585 0.89234 0.98903 0.90421 1.21189 0.91283 1.00794 0.83249 0.89521 1.22089 0.99232 1.02019 0.98465 1.45870 1.49192 1.20121 1.21281 1.19855 0.78391 0.82728 0.86304 1.90705 1.62360 1.32083 1.58217 1.23295 1.02664 1.02109 0.98402 1.84683 1.61496 1.24359 1.24027 1.22484 1.34272 1.06978 1.03907 0.92025 1.25580 0.94131 1.01650 0.94742 1.70023 1.32327 1.37932 1.15317 0.85859 0.81055 0.79778 0.79624 1.18927 1.18530 1.15766 1.77307 0.97669 1.13627 1.25172 1.46396 1.03595 1.09185 1.59617 0.70957 0.89174 0.88098 0.89596 0.81528 0.83772 0.85377 0.75019 0.90673 0.89651 0.91085 0.93548 0.89558 0.74854 0.87273 0.86488 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.43 71.24 0.74 0.29 16 2 C 0.09 1.23 7.21 41.41 0.30 1.52 16 3 C -0.29 -4.75 10.64 21.99 0.23 -4.51 16 4 C 0.07 1.52 6.02 43.10 0.26 1.78 16 5 C -0.06 -0.90 6.28 29.10 0.18 -0.72 16 6 C 0.52 10.31 7.82 87.66 0.69 11.00 16 7 O -0.57 -16.69 15.56 -3.01 -0.05 -16.74 16 8 N -0.72 -10.90 5.39 -463.06 -2.50 -13.40 16 9 C 0.12 1.88 5.23 86.38 0.45 2.33 16 10 C 0.14 2.42 2.73 44.99 0.12 2.54 16 11 H 0.09 1.76 7.58 -2.39 -0.02 1.74 16 12 C -0.16 -2.70 9.48 71.98 0.68 -2.02 16 13 N -0.71 -13.97 4.52 -442.54 -2.00 -15.97 16 14 C 0.54 16.35 7.81 87.66 0.68 17.04 16 15 O -0.56 -21.35 15.52 -3.03 -0.05 -21.40 16 16 C -0.11 -3.94 6.16 71.24 0.44 -3.50 16 17 S -0.17 -8.32 18.55 -56.49 -1.05 -9.36 16 18 C -0.53 -30.06 10.04 67.96 0.68 -29.37 16 19 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 20 C 0.04 2.56 5.50 84.86 0.47 3.02 16 21 N -0.92 -55.29 13.97 21.65 0.30 -54.99 16 22 Si 0.91 44.19 27.74 68.60 1.90 46.09 16 23 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.23 -11.16 6.74 99.48 0.67 -10.49 16 26 N -0.31 -7.82 12.04 -47.39 -0.57 -8.39 16 27 N -0.48 -8.42 7.36 -48.01 -0.35 -8.78 16 28 H 0.45 5.19 8.96 -213.32 -1.91 3.28 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.14 1.20 8.12 -2.38 -0.02 1.18 16 34 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.41 5.03 8.14 -92.71 -0.75 4.27 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.41 6.21 8.60 -92.71 -0.80 5.42 16 42 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 43 H 0.12 3.62 8.14 -2.40 -0.02 3.61 16 44 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -85.10 392.30 -0.87 -85.97 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -2.45 Total: 17.58 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.93 Total: -0.61 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -5.12 Total: -101.52 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.09 Total: -38.14 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.05 Total: -9.36 kcal Total: -85.10 -0.87 -85.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747335361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.339 kcal (2) G-P(sol) polarization free energy of solvation -85.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds