Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38228 * 119.84561 * 2 1 4 4 C 1.38271 * 120.15062 * 179.97438 * 3 2 1 5 5 F 1.35094 * 120.08471 * 179.97438 * 4 3 2 6 6 C 1.39845 * 119.82886 * 0.27281 * 4 3 2 7 7 C 1.47694 * 120.15719 * 179.72877 * 6 4 3 8 8 O 1.21572 * 119.99610 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00482 * 180.02562 * 7 6 4 10 10 C 1.46495 * 120.00246 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.42907 * 110.63583 * 66.69023 * 11 10 9 13 13 C 1.55161 * 110.72253 * 190.02353 * 11 10 9 14 14 C 1.54909 * 101.58253 * 153.87047 * 13 11 10 15 15 N 1.47426 * 104.83066 * 322.99181 * 14 13 11 16 16 C 1.36943 * 125.65028 * 204.16610 * 15 14 13 17 17 H 1.07995 * 119.99844 * 161.48044 * 16 15 14 18 18 C 1.38814 * 119.99637 * 341.48284 * 16 15 14 19 19 N 1.31617 * 119.99789 * 157.63217 * 18 16 15 20 20 Si 1.86803 * 119.99814 * 337.62633 * 18 16 15 21 21 H 1.48502 * 109.47006 * 84.54228 * 20 18 16 22 22 H 1.48499 * 109.47091 * 204.53815 * 20 18 16 23 23 H 1.48492 * 109.47258 * 324.54081 * 20 18 16 24 24 C 1.47024 * 108.70721 * 24.12933 * 15 14 13 25 25 C 1.39620 * 119.69108 * 359.53491 * 6 4 3 26 26 C 1.38116 * 119.84925 * 0.42747 * 25 6 4 27 27 F 1.35099 * 119.91785 * 179.78492 * 26 25 6 28 28 H 1.09004 * 109.46841 * 89.99961 * 1 2 3 29 29 H 1.09000 * 109.47388 * 209.99913 * 1 2 3 30 30 H 1.08994 * 109.47009 * 330.00578 * 1 2 3 31 31 H 1.08001 * 119.92228 * 359.97438 * 3 2 1 32 32 H 0.97003 * 119.99772 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.47219 * 299.99785 * 10 9 7 34 34 H 1.09009 * 109.47015 * 59.99916 * 10 9 7 35 35 H 0.96691 * 114.00118 * 300.69453 * 12 11 10 36 36 H 1.09002 * 111.00185 * 271.94548 * 13 11 10 37 37 H 1.08999 * 110.99745 * 35.79281 * 13 11 10 38 38 H 1.08996 * 110.36741 * 204.15524 * 14 13 11 39 39 H 1.08997 * 110.37019 * 81.82902 * 14 13 11 40 40 H 0.97005 * 119.99669 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.88402 * 239.52568 * 24 15 14 42 42 H 1.08996 * 109.88360 * 118.35768 * 24 15 14 43 43 H 1.07995 * 120.07913 * 180.20056 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1990 0.0000 4 6 3.5776 1.2063 0.0005 5 9 4.2486 2.3788 0.0000 6 6 4.2797 -0.0031 -0.0047 7 6 5.7566 -0.0037 -0.0102 8 8 6.3648 1.0489 -0.0107 9 7 6.4301 -1.1711 -0.0158 10 6 7.8950 -1.1716 -0.0218 11 6 8.4045 -2.6143 -0.0267 12 8 8.0682 -3.2630 -1.2548 13 6 9.9359 -2.6565 0.2195 14 6 10.1122 -4.0645 0.8409 15 7 8.9185 -4.2570 1.6843 16 6 8.8298 -5.0969 2.7623 17 1 8.0430 -4.9610 3.4894 18 6 9.7513 -6.1230 2.9202 19 7 9.9618 -6.6407 4.1118 20 14 10.6923 -6.7690 1.4415 21 1 11.8833 -5.9152 1.2011 22 1 11.1283 -8.1643 1.7031 23 1 9.8136 -6.7412 0.2448 24 6 7.8391 -3.3972 1.1771 25 6 3.5779 -1.2101 -0.0006 26 6 2.1968 -1.2023 -0.0003 27 9 1.5163 -2.3695 -0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6511 2.1321 -0.0004 32 1 5.9447 -2.0110 -0.0158 33 1 8.2549 -0.6558 -0.9120 34 1 8.2622 -0.6599 0.8680 35 1 7.1187 -3.2972 -1.4344 36 1 10.4848 -2.5718 -0.7184 37 1 10.2404 -1.8792 0.9202 38 1 11.0161 -4.1003 1.4490 39 1 10.1501 -4.8225 0.0585 40 1 10.6055 -7.3580 4.2221 41 1 7.5218 -2.7027 1.9550 42 1 6.9961 -4.0099 0.8579 43 1 4.1137 -2.1478 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754754067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = -115.961879 kcal Electronic energy + Delta-G solvation = -29597.024126 eV Core-core repulsion = 25086.279679 eV Total energy + Delta-G solvation = -4510.744448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.37273 -49.21495 -40.50856 -39.25404 -38.42924 -35.47775 -34.53892 -33.51960 -32.26109 -30.73758 -30.17234 -28.95816 -27.94633 -26.08340 -23.83688 -23.65857 -22.57394 -21.34452 -20.67677 -20.12064 -18.91349 -17.85586 -17.55660 -17.09500 -16.79546 -16.46737 -16.11040 -15.78554 -15.68897 -15.33063 -15.16536 -14.98063 -14.69364 -14.40933 -14.12682 -13.93586 -13.85545 -13.68257 -13.51809 -13.13817 -13.05823 -12.73687 -12.50870 -12.17956 -12.02316 -11.93362 -11.89019 -11.70043 -11.23749 -11.05709 -10.84856 -10.31571 -10.10908 -10.07697 -9.77901 -9.69156 -9.46785 -9.32001 -8.99329 -8.73259 -7.10864 -5.98604 -3.30214 0.04931 0.44765 2.29035 2.75106 3.12406 3.33861 3.47871 3.52116 3.58034 3.60829 3.92060 4.05195 4.19824 4.31451 4.49163 4.52082 4.56008 4.84260 4.89508 4.94189 5.02051 5.02864 5.08180 5.16790 5.33825 5.38358 5.39989 5.52790 5.56703 5.57585 5.71646 5.80453 5.99270 6.08154 6.14823 6.18733 6.29071 6.33476 6.58239 6.70468 7.13285 7.63163 7.68733 7.88261 8.26208 8.77328 9.63987 10.10961 11.17110 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.002807 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.753686 B = 9974.418406 C =10976.945037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.139 4.139 4 C 0.157 3.843 5 F -0.109 7.109 6 C -0.149 4.149 7 C 0.560 3.440 8 O -0.519 6.519 9 N -0.720 5.720 10 C 0.105 3.895 11 C 0.103 3.897 12 O -0.543 6.543 13 C -0.113 4.113 14 C 0.113 3.887 15 N -0.604 5.604 16 C -0.246 4.246 17 H 0.092 0.908 18 C 0.024 3.976 19 N -0.907 5.907 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.302 1.302 23 H -0.274 1.274 24 C 0.114 3.886 25 C -0.087 4.087 26 C 0.082 3.918 27 F -0.127 7.127 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.399 0.601 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.368 0.632 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.105 15.193 -11.421 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.158 4.158 4 C 0.136 3.864 5 F -0.087 7.087 6 C -0.154 4.154 7 C 0.346 3.654 8 O -0.395 6.395 9 N -0.373 5.373 10 C -0.019 4.019 11 C 0.061 3.939 12 O -0.348 6.348 13 C -0.152 4.152 14 C -0.012 4.012 15 N -0.331 5.331 16 C -0.373 4.373 17 H 0.109 0.891 18 C -0.175 4.175 19 N -0.550 5.550 20 Si 0.713 3.287 21 H -0.211 1.211 22 H -0.230 1.230 23 H -0.200 1.200 24 C -0.013 4.013 25 C -0.107 4.107 26 C 0.063 3.937 27 F -0.106 7.106 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.215 0.785 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.903 15.696 -11.262 25.669 hybrid contribution -0.298 -0.996 -0.686 1.245 sum -17.202 14.701 -11.947 25.588 Atomic orbital electron populations 1.20858 0.88895 1.04279 1.03642 1.19973 0.97738 0.90920 0.97910 1.20902 0.91642 0.99229 1.04047 1.17617 0.89581 0.80993 0.98214 1.91626 1.80293 1.44136 1.92612 1.19860 0.94264 0.92435 1.08800 1.17798 0.86066 0.84249 0.77286 1.90866 1.69261 1.30721 1.48675 1.45866 1.07966 1.08239 1.75215 1.22123 0.78385 0.97596 1.03758 1.22545 0.97464 0.88930 0.84915 1.86614 1.28228 1.80534 1.39439 1.22752 0.91553 0.99709 1.01192 1.21980 0.92044 0.93304 0.93855 1.44678 1.06431 1.48776 1.33212 1.18608 1.15087 1.06611 0.96990 0.89067 1.24989 0.98352 0.97618 0.96531 1.69842 1.36093 1.28447 1.20637 0.86980 0.79921 0.77527 0.84243 1.21129 1.23037 1.20016 1.22008 0.92428 0.93501 0.93326 1.21199 0.92600 0.98415 0.98460 1.17275 0.89438 0.81558 1.05476 1.91546 1.79656 1.45480 1.93898 0.89822 0.90274 0.90192 0.82898 0.76514 0.90124 0.89677 0.78498 0.90226 0.89438 0.91978 0.94955 0.92624 0.93998 0.94933 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 9.82 36.01 0.35 -0.18 16 2 C -0.06 -0.44 5.89 -104.49 -0.62 -1.06 16 3 C -0.14 -1.01 9.66 -39.57 -0.38 -1.39 16 4 C 0.16 1.60 7.28 -38.97 -0.28 1.32 16 5 F -0.11 -1.36 15.55 2.25 0.04 -1.32 16 6 C -0.15 -1.56 5.88 -104.92 -0.62 -2.18 16 7 C 0.56 7.18 7.77 -12.40 -0.10 7.08 16 8 O -0.52 -8.52 15.34 5.30 0.08 -8.44 16 9 N -0.72 -8.09 5.08 -61.30 -0.31 -8.40 16 10 C 0.11 1.35 4.80 -4.04 -0.02 1.33 16 11 C 0.10 1.55 0.93 -88.78 -0.08 1.46 16 12 O -0.54 -7.92 13.10 -35.23 -0.46 -8.38 16 13 C -0.11 -1.87 6.26 -24.58 -0.15 -2.02 16 14 C 0.11 2.45 4.69 -2.53 -0.01 2.43 16 15 N -0.60 -14.29 3.21 -170.07 -0.55 -14.83 16 16 C -0.25 -6.90 10.57 -15.06 -0.16 -7.06 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 18 C 0.02 0.70 5.43 -17.43 -0.09 0.60 16 19 N -0.91 -27.84 13.97 55.49 0.78 -27.06 16 20 Si 0.88 22.66 24.27 -169.99 -4.13 18.53 16 21 H -0.28 -7.00 6.49 56.52 0.37 -6.63 16 22 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 23 H -0.27 -7.04 6.66 56.52 0.38 -6.66 16 24 C 0.11 2.07 5.76 -3.06 -0.02 2.05 16 25 C -0.09 -0.74 9.52 -39.11 -0.37 -1.11 16 26 C 0.08 0.67 7.23 -39.49 -0.29 0.39 16 27 F -0.13 -1.13 16.45 2.25 0.04 -1.09 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.37 7.62 -51.93 -0.40 -0.03 16 30 H 0.08 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.40 3.61 5.50 -40.82 -0.22 3.39 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.16 8.03 -51.92 -0.42 0.75 16 35 H 0.37 3.83 8.44 45.56 0.38 4.21 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.32 7.96 -51.93 -0.41 0.90 16 38 H 0.06 1.42 6.63 -51.93 -0.34 1.08 16 39 H 0.03 0.75 5.58 -51.93 -0.29 0.46 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.04 0.76 7.82 -51.93 -0.41 0.35 16 42 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 43 H 0.15 0.99 6.40 -52.49 -0.34 0.66 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -35.23 357.70 -6.55 -41.78 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.59 Total: 2.15 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.84 Total: 1.68 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.08 Total: -50.30 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.38 Total: -16.82 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.07 Total: -2.42 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.13 Total: 18.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.23 -6.55 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754754067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.181 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds