Wall clock time and date at job start Sat Apr 11 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29947 * 126.28769 * 2 1 4 4 O 1.21305 * 110.25026 * 180.02562 * 3 2 1 5 5 C 1.33640 * 109.81333 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.55349 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46866 * 166.92204 * 6 5 4 8 8 C 1.52997 * 109.46982 * 286.91959 * 6 5 4 9 9 N 1.46893 * 109.46953 * 46.92086 * 6 5 4 10 10 C 1.46899 * 111.00539 * 54.16614 * 9 6 5 11 11 C 1.53232 * 109.34414 * 187.25452 * 10 9 6 12 12 N 1.47087 * 108.51957 * 306.16867 * 11 10 9 13 13 C 1.34773 * 120.88088 * 231.18349 * 12 11 10 14 14 O 1.21278 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99921 * 179.72568 * 13 12 11 16 16 S 1.80997 * 109.47048 * 180.02562 * 15 13 12 17 17 C 1.76207 * 100.00031 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00195 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99987 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47336 * 59.99962 * 21 19 17 23 23 H 1.48504 * 109.47022 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46936 * 300.00049 * 21 19 17 25 25 C 1.47079 * 118.23238 * 51.45810 * 12 11 10 26 26 C 1.46900 * 110.99740 * 178.47105 * 9 6 5 27 27 N 1.31139 * 106.89343 * 0.23091 * 5 4 3 28 28 H 1.08999 * 109.47346 * 89.97725 * 1 2 3 29 29 H 1.08998 * 109.47112 * 209.97908 * 1 2 3 30 30 H 1.09000 * 109.47139 * 329.97904 * 1 2 3 31 31 H 1.09002 * 109.47384 * 59.99976 * 8 6 5 32 32 H 1.09001 * 109.47038 * 180.02562 * 8 6 5 33 33 H 1.09006 * 109.47288 * 299.99855 * 8 6 5 34 34 H 1.09002 * 109.48957 * 67.29266 * 10 9 6 35 35 H 1.09000 * 109.48908 * 307.21550 * 10 9 6 36 36 H 1.08998 * 109.63131 * 186.45953 * 11 10 9 37 37 H 1.08995 * 109.63044 * 65.87492 * 11 10 9 38 38 H 1.09000 * 109.46931 * 300.00320 * 15 13 12 39 39 H 1.08996 * 109.47158 * 60.00069 * 15 13 12 40 40 H 0.97003 * 119.99964 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.63059 * 68.26023 * 25 12 11 42 42 H 1.09007 * 109.62155 * 188.82764 * 25 12 11 43 43 H 1.08995 * 109.49166 * 292.70075 * 26 9 6 44 44 H 1.08996 * 109.49462 * 52.78674 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 1 4.5607 -2.4753 0.2316 8 6 5.4517 -1.3604 -1.3820 9 7 5.7216 -0.9066 1.0093 10 6 5.0769 -0.8356 2.3273 11 6 6.0061 -0.1133 3.3086 12 7 7.3151 -0.7838 3.2920 13 6 7.9059 -1.1762 4.4380 14 8 7.3577 -0.9783 5.5016 15 6 9.2446 -1.8671 4.3974 16 16 9.7687 -2.2665 6.0832 17 6 11.3144 -3.0430 5.7472 18 1 11.6575 -3.1445 4.7282 19 6 12.0909 -3.5243 6.7921 20 7 11.6725 -3.4011 8.0340 21 14 13.7297 -4.3469 6.4359 22 1 14.6231 -3.3886 5.7369 23 1 14.3591 -4.7701 7.7127 24 1 13.5096 -5.5366 5.5748 25 6 7.9651 -1.0090 1.9920 26 6 6.9560 -1.7012 1.0620 27 7 2.3029 -1.0841 -0.0047 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 5.6879 -0.3221 -1.6151 32 1 6.3679 -1.9509 -1.3829 33 1 4.7655 -1.7541 -2.1320 34 1 4.8781 -1.8442 2.6897 35 1 4.1386 -0.2871 2.2441 36 1 5.5844 -0.1583 4.3127 37 1 6.1234 0.9265 3.0039 38 1 9.1622 -2.7852 3.8158 39 1 9.9794 -1.2085 3.9345 40 1 12.2150 -3.7378 8.7643 41 1 8.2672 -0.0535 1.5632 42 1 8.8393 -1.6463 2.1253 43 1 6.7311 -2.6977 1.4421 44 1 7.3806 -1.7804 0.0613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110891547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:49 Heat of formation + Delta-G solvation = 51.719354 kcal Electronic energy + Delta-G solvation = -27123.116409 eV Core-core repulsion = 23205.776303 eV Total energy + Delta-G solvation = -3917.340106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.93996 -40.20710 -38.45122 -36.43530 -35.54983 -33.17505 -32.44336 -32.09788 -30.81354 -29.46294 -29.27905 -26.69521 -25.47964 -25.16674 -23.77281 -23.31390 -21.84764 -20.80226 -19.09734 -18.52511 -17.82996 -17.65815 -16.83801 -16.34271 -15.78553 -15.68971 -15.44445 -15.21211 -14.81839 -14.42494 -14.40470 -13.99548 -13.99275 -13.65170 -13.33294 -13.25084 -12.93751 -12.80809 -12.67519 -12.54720 -12.42940 -12.10394 -11.88947 -11.72765 -11.60480 -11.50716 -11.38299 -11.23478 -11.05523 -11.05229 -10.77826 -10.23902 -9.83249 -9.40221 -9.08115 -9.05916 -8.51262 -8.24913 -6.52155 -6.22890 -3.93963 0.76736 1.82123 2.39678 2.79520 2.96460 3.04636 3.22183 3.24232 3.27920 3.44990 3.56782 3.71949 4.18625 4.28660 4.41312 4.47794 4.65624 4.69045 4.87009 4.94373 4.95339 4.99011 5.02173 5.09615 5.11033 5.12297 5.17780 5.23075 5.26052 5.42211 5.47946 5.50450 5.60221 5.64747 5.65869 5.73650 5.82504 5.88493 6.07594 6.32953 6.43806 6.56745 7.51574 7.57615 7.82854 8.33235 8.51557 9.22107 10.84415 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.002121 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.772226 B =13196.404589 C =13792.817132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.165 3.835 3 N -0.386 5.386 4 O 0.095 5.905 5 C 0.195 3.805 6 C 0.174 3.826 7 H 0.091 0.909 8 C -0.148 4.148 9 N -0.530 5.530 10 C 0.041 3.959 11 C 0.122 3.878 12 N -0.623 5.623 13 C 0.535 3.465 14 O -0.516 6.516 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.115 3.885 26 C 0.039 3.961 27 N -0.482 5.482 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.049 0.951 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.860 4.928 -22.130 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 N -0.093 5.093 4 O 0.036 5.964 5 C -0.026 4.026 6 C 0.064 3.936 7 H 0.108 0.892 8 C -0.207 4.207 9 N -0.257 5.257 10 C -0.087 4.087 11 C -0.001 4.001 12 N -0.360 5.360 13 C 0.323 3.677 14 O -0.390 6.390 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.009 4.009 26 C -0.089 4.089 27 N -0.217 5.217 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.067 0.933 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.161 6.178 -20.465 28.050 hybrid contribution 1.506 -1.599 -1.292 2.549 sum -16.655 4.579 -21.757 27.780 Atomic orbital electron populations 1.20142 0.82864 1.04794 1.04285 1.25916 1.00640 0.83439 1.00782 1.74687 0.89570 1.23955 1.21111 1.85361 1.21852 1.24388 1.64794 1.28505 0.96218 0.82400 0.95517 1.20131 0.83873 0.94080 0.95527 0.89191 1.21966 1.01417 1.04467 0.92810 1.62041 1.05190 1.52619 1.05858 1.22553 0.97240 1.00552 0.88368 1.21539 0.82744 0.95936 0.99913 1.48178 1.20496 1.60973 1.06378 1.20360 0.86694 0.77712 0.82885 1.90696 1.64720 1.54552 1.29031 1.23546 0.95835 1.02306 1.08391 1.85438 1.23717 1.76001 0.98266 1.22811 1.05410 1.44458 0.95716 0.90968 1.24996 0.98547 0.95613 0.94437 1.70010 1.37903 1.43746 0.98581 0.86224 0.81977 0.79523 0.77774 1.19911 1.20823 1.19949 1.21901 0.95086 1.01440 0.82491 1.22732 0.89807 0.95133 1.01264 1.71910 0.99539 1.29629 1.20640 0.89334 0.88989 0.89410 0.90428 0.89931 0.91199 0.93375 0.90731 0.88390 0.90782 0.89291 0.89164 0.92115 0.90311 0.88471 0.93266 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.00 0.38 0.00 16 2 C 0.16 1.65 8.22 -156.38 -1.28 0.36 16 3 N -0.39 -4.38 12.16 30.90 0.38 -4.01 16 4 O 0.10 1.04 11.12 18.11 0.20 1.24 16 5 C 0.19 1.86 5.50 -13.05 -0.07 1.79 16 6 C 0.17 1.28 2.62 -68.87 -0.18 1.10 16 7 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 8 C -0.15 -0.76 9.00 37.16 0.33 -0.42 16 9 N -0.53 -4.46 4.49 -227.45 -1.02 -5.49 16 10 C 0.04 0.42 5.38 -3.70 -0.02 0.40 16 11 C 0.12 1.49 6.60 -3.60 -0.02 1.47 16 12 N -0.62 -8.52 3.00 -172.18 -0.52 -9.04 16 13 C 0.54 9.94 7.73 -10.99 -0.08 9.85 16 14 O -0.52 -11.67 15.31 5.56 0.09 -11.59 16 15 C -0.15 -2.95 4.52 36.00 0.16 -2.79 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.00 9.50 30.94 0.29 -14.70 16 18 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 21 Si 0.92 21.10 29.55 -169.99 -5.02 16.07 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.11 1.12 6.53 -3.37 -0.02 1.10 16 26 C 0.04 0.29 5.44 -3.46 -0.02 0.28 16 27 N -0.48 -5.09 11.55 -9.87 -0.11 -5.20 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.30 6.29 -51.93 -0.33 -0.02 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 36 H 0.10 1.37 7.06 -51.93 -0.37 1.00 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.59 7.68 -51.92 -0.40 1.19 16 39 H 0.09 1.63 7.98 -51.92 -0.41 1.22 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.93 6.02 -51.92 -0.31 0.62 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.49 6.00 -51.93 -0.31 0.18 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -35.49 374.40 -8.72 -44.22 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -6.24 Total: -3.20 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.63 Total: 0.42 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.54 Total: -48.95 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.29 Total: -10.35 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.49 -8.72 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110891547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.935 kcal (2) G-P(sol) polarization free energy of solvation -35.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds