Wall clock time and date at job start Sat Apr 11 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29947 * 126.28769 * 2 1 4 4 O 1.21305 * 110.25026 * 180.02562 * 3 2 1 5 5 C 1.33640 * 109.81333 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.55349 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46866 * 166.92204 * 6 5 4 8 8 C 1.52997 * 109.46982 * 286.91959 * 6 5 4 9 9 N 1.46893 * 109.46953 * 46.92086 * 6 5 4 10 10 C 1.46899 * 111.00539 * 54.16614 * 9 6 5 11 11 C 1.53232 * 109.34414 * 187.25452 * 10 9 6 12 12 N 1.47087 * 108.51957 * 306.16867 * 11 10 9 13 13 C 1.34773 * 120.88088 * 231.18349 * 12 11 10 14 14 O 1.21278 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99921 * 179.72568 * 13 12 11 16 16 S 1.80997 * 109.47048 * 180.02562 * 15 13 12 17 17 C 1.76207 * 100.00031 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00195 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99987 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47336 * 59.99962 * 21 19 17 23 23 H 1.48504 * 109.47022 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46936 * 300.00049 * 21 19 17 25 25 C 1.47079 * 118.23238 * 51.45810 * 12 11 10 26 26 C 1.46900 * 110.99740 * 178.47105 * 9 6 5 27 27 N 1.31139 * 106.89343 * 0.23091 * 5 4 3 28 28 H 1.08999 * 109.47346 * 89.97725 * 1 2 3 29 29 H 1.08998 * 109.47112 * 209.97908 * 1 2 3 30 30 H 1.09000 * 109.47139 * 329.97904 * 1 2 3 31 31 H 1.09002 * 109.47384 * 59.99976 * 8 6 5 32 32 H 1.09001 * 109.47038 * 180.02562 * 8 6 5 33 33 H 1.09006 * 109.47288 * 299.99855 * 8 6 5 34 34 H 1.09002 * 109.48957 * 67.29266 * 10 9 6 35 35 H 1.09000 * 109.48908 * 307.21550 * 10 9 6 36 36 H 1.08998 * 109.63131 * 186.45953 * 11 10 9 37 37 H 1.08995 * 109.63044 * 65.87492 * 11 10 9 38 38 H 1.09000 * 109.46931 * 300.00320 * 15 13 12 39 39 H 1.08996 * 109.47158 * 60.00069 * 15 13 12 40 40 H 0.97003 * 119.99964 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.63059 * 68.26023 * 25 12 11 42 42 H 1.09007 * 109.62155 * 188.82764 * 25 12 11 43 43 H 1.08995 * 109.49166 * 292.70075 * 26 9 6 44 44 H 1.08996 * 109.49462 * 52.78674 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 1 4.5607 -2.4753 0.2316 8 6 5.4517 -1.3604 -1.3820 9 7 5.7216 -0.9066 1.0093 10 6 5.0769 -0.8356 2.3273 11 6 6.0061 -0.1133 3.3086 12 7 7.3151 -0.7838 3.2920 13 6 7.9059 -1.1762 4.4380 14 8 7.3577 -0.9783 5.5016 15 6 9.2446 -1.8671 4.3974 16 16 9.7687 -2.2665 6.0832 17 6 11.3144 -3.0430 5.7472 18 1 11.6575 -3.1445 4.7282 19 6 12.0909 -3.5243 6.7921 20 7 11.6725 -3.4011 8.0340 21 14 13.7297 -4.3469 6.4359 22 1 14.6231 -3.3886 5.7369 23 1 14.3591 -4.7701 7.7127 24 1 13.5096 -5.5366 5.5748 25 6 7.9651 -1.0090 1.9920 26 6 6.9560 -1.7012 1.0620 27 7 2.3029 -1.0841 -0.0047 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 5.6879 -0.3221 -1.6151 32 1 6.3679 -1.9509 -1.3829 33 1 4.7655 -1.7541 -2.1320 34 1 4.8781 -1.8442 2.6897 35 1 4.1386 -0.2871 2.2441 36 1 5.5844 -0.1583 4.3127 37 1 6.1234 0.9265 3.0039 38 1 9.1622 -2.7852 3.8158 39 1 9.9794 -1.2085 3.9345 40 1 12.2150 -3.7378 8.7643 41 1 8.2672 -0.0535 1.5632 42 1 8.8393 -1.6463 2.1253 43 1 6.7311 -2.6977 1.4421 44 1 7.3806 -1.7804 0.0613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110891547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:49 Heat of formation + Delta-G solvation = 24.823481 kcal Electronic energy + Delta-G solvation = -27124.282702 eV Core-core repulsion = 23205.776303 eV Total energy + Delta-G solvation = -3918.506399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.69161 -41.28974 -39.53053 -37.19267 -36.56183 -34.56427 -34.01644 -33.00734 -31.51202 -30.65870 -30.04637 -27.81369 -27.39940 -25.92665 -24.53665 -24.09605 -22.80871 -21.54522 -20.36856 -19.53639 -19.26523 -18.56236 -18.09316 -17.16514 -16.88772 -16.84784 -16.72042 -16.55156 -15.97152 -15.78785 -15.27855 -15.06351 -14.70588 -14.49787 -14.47464 -14.44668 -13.93341 -13.77570 -13.41397 -13.37528 -13.23374 -13.14538 -13.09078 -12.84467 -12.72707 -12.62065 -12.46540 -12.37154 -12.28681 -12.17491 -11.95861 -11.71788 -11.10733 -10.96861 -10.89711 -10.24194 -9.95055 -9.48841 -8.65850 -8.32435 -6.11008 0.03272 1.09402 1.26375 1.45972 1.47149 1.55990 1.56657 1.71668 2.03557 2.29414 2.29641 2.79281 3.01776 3.05543 3.26076 3.58718 3.67528 3.81868 3.86997 3.90059 4.11367 4.16800 4.25544 4.27152 4.33661 4.41693 4.44285 4.49281 4.54538 4.58916 4.61931 4.66226 4.77470 4.79146 4.84855 4.94927 5.03917 5.05818 5.26272 5.43354 5.43826 5.65474 5.76443 6.21560 6.28376 7.08652 7.09014 7.11908 8.76447 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.002121 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.772226 B =13196.404589 C =13792.817132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.161 3.839 3 N -0.410 5.410 4 O 0.082 5.918 5 C 0.198 3.802 6 C 0.176 3.824 7 H 0.097 0.903 8 C -0.143 4.143 9 N -0.529 5.529 10 C 0.054 3.946 11 C 0.122 3.878 12 N -0.610 5.610 13 C 0.533 3.467 14 O -0.569 6.569 15 C -0.121 4.121 16 S -0.157 6.157 17 C -0.543 4.543 18 H 0.086 0.914 19 C 0.011 3.989 20 N -0.913 5.913 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.282 1.282 24 H -0.260 1.260 25 C 0.105 3.895 26 C 0.042 3.958 27 N -0.502 5.502 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.270 0.730 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.034 4.229 -25.600 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 N -0.121 5.121 4 O 0.026 5.974 5 C -0.023 4.023 6 C 0.066 3.934 7 H 0.114 0.886 8 C -0.201 4.201 9 N -0.256 5.256 10 C -0.075 4.075 11 C -0.001 4.001 12 N -0.345 5.345 13 C 0.321 3.679 14 O -0.448 6.448 15 C -0.272 4.272 16 S 0.070 5.930 17 C -0.691 4.691 18 H 0.104 0.896 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.185 1.185 23 H -0.207 1.207 24 H -0.185 1.185 25 C -0.017 4.017 26 C -0.085 4.085 27 N -0.237 5.237 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.064 0.936 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.333 5.487 -24.012 30.119 hybrid contribution 1.127 -1.320 -0.329 1.767 sum -16.206 4.167 -24.342 29.538 Atomic orbital electron populations 1.20346 0.80517 1.05648 1.05630 1.26617 1.02112 0.82987 0.99458 1.74677 0.89913 1.24810 1.22673 1.85324 1.21846 1.24951 1.65295 1.28992 0.96818 0.82158 0.94296 1.20336 0.82995 0.93687 0.96395 0.88583 1.21985 1.02211 1.04844 0.91072 1.62032 1.05587 1.53215 1.04777 1.22320 0.96583 0.99535 0.89032 1.21586 0.82318 0.96749 0.99442 1.48176 1.20590 1.59171 1.06516 1.20210 0.86362 0.77792 0.83519 1.90681 1.65832 1.56957 1.31282 1.23352 0.96834 1.03865 1.03167 1.85673 1.24947 1.76713 1.05691 1.23164 1.05271 1.44167 0.96472 0.89578 1.26153 1.02926 0.96186 0.94053 1.70191 1.39728 1.45153 0.99837 0.84996 0.76461 0.78717 0.77784 1.18536 1.20705 1.18489 1.22289 0.95783 1.02977 0.80677 1.22801 0.88815 0.94261 1.02617 1.71933 1.00091 1.30087 1.21583 0.87631 0.88091 0.88557 0.90634 0.87735 0.90659 0.94348 0.91042 0.90793 0.89623 0.87022 0.87084 0.92087 0.88460 0.87766 0.93567 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.51 71.23 0.75 0.07 16 2 C 0.16 3.08 8.22 138.46 1.14 4.22 16 3 N -0.41 -9.12 12.16 -60.31 -0.73 -9.85 16 4 O 0.08 1.72 11.12 74.85 0.83 2.55 16 5 C 0.20 3.53 5.50 88.38 0.49 4.02 16 6 C 0.18 2.15 2.62 44.17 0.12 2.27 16 7 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 8 C -0.14 -0.97 9.00 71.98 0.65 -0.32 16 9 N -0.53 -7.58 4.49 -873.53 -3.92 -11.50 16 10 C 0.05 1.06 5.38 86.38 0.46 1.53 16 11 C 0.12 2.95 6.60 86.35 0.57 3.52 16 12 N -0.61 -15.94 3.00 -817.05 -2.45 -18.39 16 13 C 0.53 19.80 7.73 87.66 0.68 20.47 16 14 O -0.57 -26.80 15.31 -3.02 -0.05 -26.84 16 15 C -0.12 -4.66 4.52 71.24 0.32 -4.33 16 16 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 17 C -0.54 -30.36 9.50 67.95 0.65 -29.72 16 18 H 0.09 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.64 5.49 84.86 0.47 1.11 16 20 N -0.91 -55.83 13.22 21.65 0.29 -55.55 16 21 Si 1.00 42.78 29.55 68.60 2.03 44.80 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 C 0.10 1.71 6.53 86.50 0.57 2.28 16 26 C 0.04 0.49 5.44 86.54 0.47 0.96 16 27 N -0.50 -10.08 11.55 -303.18 -3.50 -13.58 16 28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.26 6.29 -2.39 -0.02 0.24 16 33 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.47 6.51 -2.39 -0.02 1.45 16 36 H 0.07 2.17 7.06 -2.39 -0.02 2.15 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.11 3.77 7.68 -2.40 -0.02 3.75 16 39 H 0.11 3.80 7.98 -2.40 -0.02 3.78 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.10 1.60 6.02 -2.38 -0.01 1.59 16 43 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.13 0.64 6.00 -2.39 -0.01 0.63 16 Total: -1.00 -80.80 374.40 -0.34 -81.14 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.02 Total: 10.99 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 7.32 Total: 6.07 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -10.32 Total: -108.87 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.79 Total: -24.29 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -80.80 -0.34 -81.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110891547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.960 kcal (2) G-P(sol) polarization free energy of solvation -80.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds