Wall clock time and date at job start Sat Apr 11 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29946 * 126.28785 * 2 1 4 4 O 1.21303 * 110.25200 * 179.68524 * 3 2 1 5 5 C 1.33649 * 109.80668 * 0.47200 * 4 3 2 6 6 C 1.50699 * 126.54975 * 179.79975 * 5 4 3 7 7 H 1.09000 * 109.47247 * 194.69039 * 6 5 4 8 8 C 1.52997 * 109.47265 * 74.68853 * 6 5 4 9 9 N 1.46906 * 109.47140 * 314.69018 * 6 5 4 10 10 C 1.46900 * 110.99676 * 304.30487 * 9 6 5 11 11 C 1.53238 * 109.33747 * 172.74743 * 10 9 6 12 12 N 1.47075 * 108.52323 * 53.82834 * 11 10 9 13 13 C 1.34780 * 120.88846 * 128.79687 * 12 11 10 14 14 O 1.21272 * 120.00656 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99165 * 0.02562 * 13 12 11 16 16 S 1.81006 * 109.46932 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00219 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00130 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00197 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99990 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47031 * 90.00400 * 21 19 17 23 23 H 1.48505 * 109.47151 * 209.99838 * 21 19 17 24 24 H 1.48497 * 109.47088 * 330.00414 * 21 19 17 25 25 C 1.47082 * 118.23640 * 308.81163 * 12 11 10 26 26 C 1.46888 * 111.00033 * 180.02562 * 9 6 5 27 27 N 1.31130 * 106.89800 * 359.53970 * 5 4 3 28 28 H 1.08998 * 109.47027 * 270.01889 * 1 2 3 29 29 H 1.09001 * 109.46912 * 30.01930 * 1 2 3 30 30 H 1.09001 * 109.47351 * 150.01888 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99396 * 8 6 5 32 32 H 1.09001 * 109.47375 * 180.02562 * 8 6 5 33 33 H 1.09000 * 109.47140 * 300.00252 * 8 6 5 34 34 H 1.09000 * 109.48943 * 292.70004 * 10 9 6 35 35 H 1.08993 * 109.49832 * 52.78604 * 10 9 6 36 36 H 1.09000 * 109.62989 * 294.11824 * 11 10 9 37 37 H 1.09005 * 109.62990 * 173.53484 * 11 10 9 38 38 H 1.09003 * 109.47419 * 299.99959 * 15 13 12 39 39 H 1.08995 * 109.47299 * 60.00996 * 15 13 12 40 40 H 0.96998 * 120.00085 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.63044 * 291.47581 * 25 12 11 42 42 H 1.09005 * 109.63108 * 170.89245 * 25 12 11 43 43 H 1.09008 * 109.49677 * 307.21240 * 26 9 6 44 44 H 1.09002 * 109.49726 * 67.26277 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 0.0063 5 6 3.5299 -0.6212 0.0006 6 6 4.7969 -1.4371 0.0011 7 1 4.5651 -2.4684 -0.2649 8 6 5.4275 -1.3991 1.3945 9 7 5.7391 -0.8789 -0.9781 10 6 5.1292 -0.8048 -2.3124 11 6 6.0716 -0.0551 -3.2602 12 7 7.3917 -0.7020 -3.2148 13 6 8.0205 -1.0715 -4.3482 14 8 9.1085 -1.6042 -4.2921 15 6 7.3715 -0.8225 -5.6853 16 16 8.4549 -1.4263 -7.0036 17 6 7.4786 -1.0190 -8.4126 18 1 6.5193 -0.5395 -8.2847 19 6 7.9422 -1.3142 -9.6871 20 7 9.1111 -1.8990 -9.8431 21 14 6.9068 -0.8830 -11.1809 22 1 7.2502 0.4860 -11.6427 23 1 7.1794 -1.8555 -12.2696 24 1 5.4679 -0.9366 -10.8180 25 6 8.0073 -0.9355 -1.8995 26 6 6.9885 -1.6509 -1.0058 27 7 2.3030 -1.0841 0.0003 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 4.7284 -1.8132 2.1211 32 1 6.3442 -1.9888 1.3948 33 1 5.6593 -0.3678 1.6605 34 1 4.9590 -1.8127 -2.6909 35 1 4.1793 -0.2742 -2.2493 36 1 6.1616 0.9833 -2.9414 37 1 5.6784 -0.0965 -4.2760 38 1 6.4177 -1.3484 -5.7298 39 1 7.2033 0.2467 -5.8140 40 1 9.4354 -2.1050 -10.7337 41 1 8.2834 0.0183 -1.4499 42 1 8.8939 -1.5590 -2.0157 43 1 7.3872 -1.7340 0.0053 44 1 6.7919 -2.6470 -1.4022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110891550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:51 Heat of formation + Delta-G solvation = 25.236697 kcal Electronic energy + Delta-G solvation = -27206.419806 eV Core-core repulsion = 23287.931325 eV Total energy + Delta-G solvation = -3918.488480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.67648 -41.30132 -39.53640 -37.18234 -36.57022 -34.59542 -34.06878 -32.64726 -32.06781 -30.41405 -30.00105 -27.83618 -27.55720 -25.82130 -24.52033 -24.14447 -22.79060 -21.54256 -20.36756 -19.55635 -19.26324 -18.52846 -18.11535 -17.18364 -16.89793 -16.84457 -16.75179 -16.55016 -15.97488 -15.79058 -15.31825 -15.04485 -14.72334 -14.49809 -14.47798 -14.45078 -13.92594 -13.80572 -13.43222 -13.40227 -13.23382 -13.16581 -13.05702 -12.90146 -12.74331 -12.63245 -12.45301 -12.35064 -12.22474 -12.17205 -12.02166 -11.72110 -11.15245 -10.95787 -10.89387 -10.28222 -9.95396 -9.49030 -8.68102 -8.35553 -6.13756 0.04703 1.10863 1.24113 1.41606 1.44488 1.54480 1.55244 1.72549 2.02165 2.26274 2.29324 2.80825 2.98593 3.07117 3.22220 3.56475 3.70037 3.75529 3.87784 3.95983 4.09466 4.16571 4.17982 4.24193 4.34212 4.42810 4.44053 4.49385 4.55442 4.56347 4.62257 4.67605 4.77491 4.80126 4.85783 4.92971 5.02439 5.06610 5.24735 5.40771 5.44496 5.67590 5.74391 6.18685 6.24306 7.05769 7.10667 7.10734 8.73648 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.002488 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.883919 B =11252.657956 C =12829.642008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.161 3.839 3 N -0.410 5.410 4 O 0.083 5.917 5 C 0.199 3.801 6 C 0.176 3.824 7 H 0.097 0.903 8 C -0.144 4.144 9 N -0.530 5.530 10 C 0.047 3.953 11 C 0.113 3.887 12 N -0.610 5.610 13 C 0.536 3.464 14 O -0.561 6.561 15 C -0.126 4.126 16 S -0.148 6.148 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.998 3.002 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.259 1.259 25 C 0.114 3.886 26 C 0.049 3.951 27 N -0.501 5.501 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.271 0.729 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 3.103 25.973 30.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 N -0.120 5.120 4 O 0.027 5.973 5 C -0.022 4.022 6 C 0.066 3.934 7 H 0.114 0.886 8 C -0.202 4.202 9 N -0.257 5.257 10 C -0.082 4.082 11 C -0.010 4.010 12 N -0.344 5.344 13 C 0.324 3.676 14 O -0.440 6.440 15 C -0.277 4.277 16 S 0.079 5.921 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.182 1.182 25 C -0.008 4.008 26 C -0.078 4.078 27 N -0.236 5.236 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.148 0.852 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.417 3.235 26.106 29.997 hybrid contribution -1.594 -0.043 -1.543 2.219 sum -16.011 3.192 24.563 29.494 Atomic orbital electron populations 1.20345 0.80580 1.05653 1.05584 1.26599 1.02068 0.82980 0.99487 1.74681 0.89917 1.24785 1.22624 1.85331 1.21821 1.24912 1.65264 1.28933 0.96712 0.82148 0.94385 1.20297 0.82911 0.93488 0.96673 0.88581 1.21991 1.02334 1.04784 0.91126 1.62017 1.04776 1.53078 1.05787 1.22418 0.97086 0.99900 0.88807 1.21945 0.80945 0.97477 1.00627 1.48152 1.20340 1.60344 1.05587 1.20044 0.84801 0.77213 0.85558 1.90675 1.22243 1.43926 1.87132 1.23380 1.03506 1.05700 0.95134 1.85548 1.28807 1.79916 0.97823 1.23179 1.07208 1.46357 0.92626 0.90045 1.26114 0.96657 0.94203 1.02114 1.70176 1.19978 1.40190 1.24337 0.84967 0.78478 0.78275 0.76346 1.19304 1.20245 1.18249 1.21845 0.96171 1.02098 0.80700 1.22629 0.88496 0.94277 1.02423 1.71931 1.00060 1.30066 1.21540 0.87705 0.88563 0.88089 0.90559 0.88028 0.90629 0.93846 0.90509 0.88952 0.88844 0.87750 0.87603 0.91963 0.89123 0.89701 0.85177 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 71.24 0.75 0.08 16 2 C 0.16 3.02 8.22 138.46 1.14 4.16 16 3 N -0.41 -8.90 12.16 -60.30 -0.73 -9.64 16 4 O 0.08 1.69 11.14 74.78 0.83 2.53 16 5 C 0.20 3.45 5.56 88.38 0.49 3.94 16 6 C 0.18 2.16 2.62 44.17 0.12 2.28 16 7 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 8 C -0.14 -1.05 8.96 71.98 0.64 -0.40 16 9 N -0.53 -7.59 4.49 -874.40 -3.93 -11.52 16 10 C 0.05 0.82 5.39 86.38 0.47 1.29 16 11 C 0.11 2.30 6.50 86.35 0.56 2.86 16 12 N -0.61 -15.96 3.01 -817.91 -2.46 -18.42 16 13 C 0.54 19.93 7.73 87.66 0.68 20.61 16 14 O -0.56 -25.69 15.31 -3.01 -0.05 -25.73 16 15 C -0.13 -5.05 4.52 71.24 0.32 -4.73 16 16 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 17 C -0.55 -31.19 9.50 67.95 0.65 -30.54 16 18 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.80 5.49 84.86 0.47 1.26 16 20 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 21 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 25 C 0.11 2.31 6.60 86.35 0.57 2.88 16 26 C 0.05 0.67 5.39 86.39 0.47 1.14 16 27 N -0.50 -9.81 11.55 -303.18 -3.50 -13.31 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.36 6.25 -2.39 -0.01 0.35 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.39 6.57 -2.39 -0.02 1.37 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.94 6.02 -2.38 -0.01 1.93 16 38 H 0.10 3.81 7.66 -2.39 -0.02 3.80 16 39 H 0.11 3.88 8.00 -2.40 -0.02 3.86 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 2.05 7.06 -2.38 -0.02 2.03 16 43 H 0.13 0.95 5.95 -2.38 -0.01 0.94 16 44 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -79.33 374.38 -0.35 -79.68 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.02 Total: 10.98 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 7.31 Total: 4.81 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -10.34 Total: -108.50 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.79 Total: -23.20 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -79.33 -0.35 -79.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110891550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.919 kcal (2) G-P(sol) polarization free energy of solvation -79.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds