Wall clock time and date at job start Sat Apr 11 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47720 * 2 1 4 4 H 1.08996 * 109.47406 * 305.69395 * 3 2 1 5 5 C 1.50703 * 109.47504 * 185.69126 * 3 2 1 6 6 H 1.07999 * 119.99543 * 275.00872 * 5 3 2 7 7 C 1.37872 * 119.99731 * 95.00300 * 5 3 2 8 8 N 1.31514 * 119.99521 * 184.83349 * 7 5 3 9 9 Si 1.86801 * 120.00304 * 4.83353 * 7 5 3 10 10 H 1.48498 * 109.46996 * 84.86097 * 9 7 5 11 11 H 1.48498 * 109.46878 * 204.86045 * 9 7 5 12 12 H 1.48498 * 109.47036 * 324.85769 * 9 7 5 13 13 N 1.46506 * 109.47027 * 65.69200 * 3 2 1 14 14 C 1.34777 * 119.99545 * 275.00227 * 13 3 2 15 15 O 1.21574 * 120.00512 * 359.97438 * 14 13 3 16 16 N 1.34783 * 119.99590 * 179.97438 * 14 13 3 17 17 C 1.39077 * 119.99860 * 179.97438 * 16 14 13 18 18 N 1.29888 * 125.65667 * 0.02562 * 17 16 14 19 19 N 1.26247 * 117.66294 * 179.97438 * 18 17 16 20 20 C 1.29505 * 116.58018 * 0.02562 * 19 18 17 21 21 C 1.50706 * 126.14213 * 180.02562 * 20 19 18 22 22 C 1.53172 * 109.54321 * 59.57216 * 21 20 19 23 23 C 1.53097 * 109.16075 * 183.15496 * 22 21 20 24 24 O 1.42900 * 109.41599 * 57.61151 * 23 22 21 25 25 C 1.42903 * 114.09540 * 298.83895 * 24 23 22 26 26 C 1.53093 * 109.41339 * 61.16379 * 25 24 23 27 27 S 1.71313 * 125.65657 * 180.30271 * 17 16 14 28 28 H 1.09001 * 109.46542 * 59.99378 * 1 2 3 29 29 H 1.08997 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46584 * 299.99846 * 1 2 3 31 31 H 1.09006 * 109.46898 * 239.99472 * 2 1 3 32 32 H 1.09008 * 109.47175 * 120.00479 * 2 1 3 33 33 H 0.97002 * 120.00191 * 180.02562 * 8 7 5 34 34 H 0.96991 * 120.00137 * 95.00014 * 13 3 2 35 35 H 0.96999 * 120.00253 * 0.02562 * 16 14 13 36 36 H 1.08995 * 109.54262 * 179.84278 * 21 20 19 37 37 H 1.08999 * 109.52756 * 303.05577 * 22 21 20 38 38 H 1.09001 * 109.52017 * 63.25122 * 22 21 20 39 39 H 1.09001 * 109.47996 * 297.62557 * 23 22 21 40 40 H 1.09002 * 109.48190 * 177.59734 * 23 22 21 41 41 H 1.08993 * 109.48272 * 301.17814 * 25 24 23 42 42 H 1.09000 * 109.48081 * 181.13814 * 25 24 23 43 43 H 1.08998 * 109.52415 * 182.48717 * 26 25 24 44 44 H 1.08997 * 109.52739 * 62.29231 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5960 1.9848 -0.8346 5 6 3.5406 1.4446 -0.1409 6 1 4.1651 1.3330 0.7331 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4960 -1.5216 9 14 3.0420 1.9169 -2.8785 10 1 2.7757 3.3739 -2.9863 11 1 3.7404 1.4494 -4.1027 12 1 1.7564 1.1881 -2.7332 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3900 15 8 -0.3359 2.6308 0.4637 16 7 0.1075 3.2563 2.5483 17 6 -1.1470 3.8413 2.6836 18 7 -2.0691 3.8755 1.7694 19 7 -3.1572 4.4482 2.0555 20 6 -3.2514 4.9526 3.2445 21 6 -4.4448 5.6786 3.8101 22 6 -5.6639 4.7514 3.7930 23 6 -6.8880 5.5216 4.2953 24 8 -7.0926 6.6747 3.4765 25 6 -6.0044 7.6009 3.4907 26 6 -4.7449 6.9143 2.9560 27 16 -1.7299 4.6423 4.0812 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8254 1.5980 -2.3972 34 1 2.2948 2.1149 1.9977 35 1 0.7354 3.2790 3.2873 36 1 -4.2330 5.9858 4.8342 37 1 -5.8440 4.4051 2.7753 38 1 -5.4800 3.8959 4.4428 39 1 -6.7236 5.8328 5.3269 40 1 -7.7674 4.8794 4.2450 41 1 -5.8284 7.9392 4.5117 42 1 -6.2471 8.4566 2.8607 43 1 -3.9036 7.6055 3.0073 44 1 -4.9063 6.6116 1.9214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297498782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:30 Heat of formation + Delta-G solvation = -37.280744 kcal Electronic energy + Delta-G solvation = -27093.425625 eV Core-core repulsion = 23172.226185 eV Total energy + Delta-G solvation = -3921.199440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.46855 -41.23626 -40.16447 -37.60990 -36.22172 -35.42243 -34.44154 -33.14521 -32.05069 -30.96655 -29.48325 -27.77293 -25.67630 -24.72753 -24.50038 -23.58086 -21.94405 -21.63563 -21.02289 -20.40905 -19.34710 -18.56037 -18.21566 -17.44538 -17.15340 -16.90016 -16.67946 -16.19150 -16.12722 -15.98653 -15.63858 -15.24168 -14.84171 -14.79672 -14.41477 -14.34192 -14.07924 -13.81183 -13.75421 -13.33070 -12.97437 -12.76323 -12.54860 -12.52196 -12.43547 -12.23338 -11.91072 -11.85280 -11.78669 -11.68371 -11.48910 -11.23730 -11.11958 -10.86775 -10.81233 -10.59550 -10.51348 -10.01557 -9.62073 -8.41952 -6.47136 -0.56248 -0.53376 0.10342 1.25628 1.32553 1.43544 1.45244 1.50646 2.19124 2.24486 2.80643 2.98302 3.05937 3.29320 3.66989 3.74746 3.83888 3.98712 4.03213 4.28976 4.34005 4.38300 4.38528 4.49260 4.56363 4.65195 4.73694 4.77645 4.80092 4.87067 4.93773 5.08138 5.10948 5.13395 5.18334 5.21766 5.33680 5.36716 5.52082 5.64218 5.69828 6.17046 6.32074 6.58779 6.96375 7.19483 7.47181 7.70275 8.72506 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.002352 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.681359 B =11902.648695 C =12038.868124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.260 3.740 4 H 0.028 0.972 5 C -0.522 4.522 6 H 0.064 0.936 7 C 0.040 3.960 8 N -0.925 5.925 9 Si 0.918 3.082 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.257 1.257 13 N -0.704 5.704 14 C 0.687 3.313 15 O -0.574 6.574 16 N -0.625 5.625 17 C 0.230 3.770 18 N -0.324 5.324 19 N -0.259 5.259 20 C 0.002 3.998 21 C 0.001 3.999 22 C -0.144 4.144 23 C 0.063 3.937 24 O -0.407 6.407 25 C 0.064 3.936 26 C -0.145 4.145 27 S 0.192 5.808 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.271 0.729 34 H 0.407 0.593 35 H 0.438 0.562 36 H 0.129 0.871 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.065 10.527 20.663 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C 0.156 3.844 4 H 0.046 0.954 5 C -0.561 4.561 6 H 0.082 0.918 7 C -0.161 4.161 8 N -0.563 5.563 9 Si 0.744 3.256 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.181 1.181 13 N -0.359 5.359 14 C 0.385 3.615 15 O -0.448 6.448 16 N -0.282 5.282 17 C -0.142 4.142 18 N -0.168 5.168 19 N -0.094 5.094 20 C -0.281 4.281 21 C -0.022 4.022 22 C -0.184 4.184 23 C -0.013 4.013 24 O -0.326 6.326 25 C -0.013 4.013 26 C -0.185 4.185 27 S 0.433 5.567 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.280 0.720 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.664 10.334 19.182 30.029 hybrid contribution 1.157 -0.165 -0.698 1.361 sum -19.507 10.169 18.484 28.733 Atomic orbital electron populations 1.21731 0.96257 1.00005 1.00810 1.22002 0.94463 0.97973 1.01645 1.18861 0.93353 0.89960 0.82268 0.95430 1.21150 0.89879 1.50305 0.94723 0.91778 1.25484 0.95596 0.93975 1.01082 1.69950 1.10984 1.50058 1.25304 0.86182 0.80096 0.79092 0.80236 1.20502 1.20230 1.18148 1.45539 1.13208 1.58513 1.18607 1.16268 0.83533 0.79179 0.82520 1.91032 1.51458 1.63026 1.39293 1.41964 1.12359 1.56759 1.17116 1.25907 0.92582 0.99813 0.95859 1.71582 0.97201 1.20344 1.27665 1.71340 1.13622 1.09068 1.15402 1.30451 1.00114 1.04665 0.92890 1.20027 0.87579 0.94048 1.00578 1.22256 0.94248 0.98924 1.02958 1.22718 0.97538 0.86663 0.94385 1.87940 1.41720 1.33272 1.69649 1.22705 0.84818 0.91507 1.02230 1.22265 1.00181 0.96363 0.99679 1.84171 1.09888 1.50947 1.11651 0.95247 0.92554 0.93771 0.92784 0.91382 0.91955 0.75738 0.72038 0.85265 0.92621 0.89211 0.90288 0.87736 0.90276 0.87816 0.89355 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.53 71.98 0.61 -4.66 16 2 C -0.12 -5.13 5.59 30.59 0.17 -4.96 16 3 C 0.26 11.97 1.89 44.24 0.08 12.05 16 4 H 0.03 1.44 4.73 -2.39 -0.01 1.43 16 5 C -0.52 -27.30 9.05 25.60 0.23 -27.06 16 6 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 7 C 0.04 2.21 5.47 84.65 0.46 2.67 16 8 N -0.92 -54.10 13.96 21.45 0.30 -53.80 16 9 Si 0.92 44.96 26.99 68.60 1.85 46.81 16 10 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.26 -12.48 6.82 99.48 0.68 -11.80 16 13 N -0.70 -26.59 5.03 -461.42 -2.32 -28.91 16 14 C 0.69 26.19 7.13 179.05 1.28 27.47 16 15 O -0.57 -27.29 12.16 -3.95 -0.05 -27.34 16 16 N -0.63 -17.46 5.41 -326.97 -1.77 -19.23 16 17 C 0.23 6.68 8.14 179.10 1.46 8.14 16 18 N -0.32 -12.06 9.73 -59.09 -0.58 -12.63 16 19 N -0.26 -8.29 11.65 -47.68 -0.56 -8.85 16 20 C 0.00 0.04 6.32 88.45 0.56 0.60 16 21 C 0.00 0.01 2.75 -11.42 -0.03 -0.02 16 22 C -0.14 -2.00 5.40 30.68 0.17 -1.84 16 23 C 0.06 0.67 6.84 72.01 0.49 1.16 16 24 O -0.41 -6.38 10.77 -148.98 -1.60 -7.98 16 25 C 0.06 0.69 6.84 72.01 0.49 1.19 16 26 C -0.15 -2.07 5.41 30.69 0.17 -1.91 16 27 S 0.19 3.30 23.31 -56.49 -1.32 1.99 16 28 H 0.03 1.29 7.88 -2.39 -0.02 1.27 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.80 5.63 -2.39 -0.01 1.79 16 31 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.41 12.63 8.61 -92.72 -0.80 11.83 16 35 H 0.44 7.91 8.83 -92.71 -0.82 7.09 16 36 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -78.10 369.15 -0.49 -78.59 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.60 Total: 18.52 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.14 Total: 12.84 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -4.92 Total: -123.42 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.65 Total: -35.32 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.85 Total: 46.81 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.32 Total: 1.99 kcal Total: -78.10 -0.49 -78.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297498782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.310 kcal (2) G-P(sol) polarization free energy of solvation -78.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds