Wall clock time and date at job start Sat Apr 11 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33471 * 125.49951 * 2 1 4 4 C 1.30332 * 109.72571 * 179.97438 * 3 2 1 5 5 N 1.34682 * 108.04609 * 0.04757 * 4 3 2 6 6 N 1.30986 * 125.49395 * 179.97438 * 2 1 3 7 7 C 1.46291 * 125.04505 * 179.90817 * 5 4 3 8 8 C 1.53305 * 108.76984 * 342.93887 * 7 5 4 9 9 C 1.53152 * 109.49124 * 50.14935 * 8 7 5 10 10 C 1.50927 * 127.90230 * 180.02562 * 4 3 2 11 11 H 1.08995 * 109.71694 * 283.72964 * 10 4 3 12 12 N 1.46502 * 109.74915 * 44.34977 * 10 4 3 13 13 S 1.65602 * 119.99985 * 263.76507 * 12 10 4 14 14 O 1.42097 * 104.27665 * 181.07060 * 13 12 10 15 15 O 1.42099 * 104.27778 * 308.93371 * 13 12 10 16 16 C 1.81402 * 104.44873 * 65.00268 * 13 12 10 17 17 C 1.52997 * 109.47204 * 173.41296 * 16 13 12 18 18 C 1.50694 * 115.55186 * 39.94710 * 17 16 13 19 19 H 1.07995 * 120.00457 * 264.83901 * 18 17 16 20 20 C 1.37881 * 119.99648 * 84.83619 * 18 17 16 21 21 N 1.31510 * 120.00216 * 353.17240 * 20 18 17 22 22 Si 1.86800 * 119.99830 * 173.17743 * 20 18 17 23 23 H 1.48500 * 109.47215 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47321 * 119.99840 * 22 20 18 25 25 H 1.48503 * 109.46864 * 239.99829 * 22 20 18 26 26 C 1.53004 * 117.49638 * 254.24042 * 17 16 13 27 27 C 1.52998 * 117.50031 * 185.62035 * 17 16 13 28 28 H 1.09000 * 109.47187 * 269.97847 * 1 2 3 29 29 H 1.08998 * 109.47256 * 29.97657 * 1 2 3 30 30 H 1.09000 * 109.47334 * 149.97236 * 1 2 3 31 31 H 1.09011 * 109.58808 * 102.73778 * 7 5 4 32 32 H 1.08994 * 109.58941 * 223.16388 * 7 5 4 33 33 H 1.09001 * 109.47231 * 290.14094 * 8 7 5 34 34 H 1.09002 * 109.46847 * 170.15398 * 8 7 5 35 35 H 1.09001 * 109.51013 * 170.89393 * 9 8 7 36 36 H 1.08995 * 109.50750 * 50.75895 * 9 8 7 37 37 H 0.96996 * 120.00307 * 83.76591 * 12 10 4 38 38 H 1.09001 * 109.47177 * 293.41499 * 16 13 12 39 39 H 1.09004 * 109.47296 * 53.41071 * 16 13 12 40 40 H 0.96998 * 120.00232 * 185.01929 * 21 20 18 41 41 H 1.08993 * 117.50317 * 0.02562 * 26 17 16 42 42 H 1.09005 * 117.49489 * 145.02054 * 26 17 16 43 43 H 1.09002 * 117.50223 * 214.97897 * 27 17 16 44 44 H 1.09002 * 117.49694 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5363 0.7323 0.0005 5 7 3.5897 -0.6134 -0.0001 6 7 2.2675 -1.0665 0.0005 7 6 4.8197 -1.4053 -0.0018 8 6 5.9852 -0.5054 -0.4284 9 6 5.9682 0.7810 0.4026 10 6 4.7523 1.6263 0.0013 11 1 4.9048 2.0405 -0.9953 12 7 4.5666 2.7138 0.9653 13 16 4.0122 4.1881 0.4537 14 8 3.9837 4.9802 1.6331 15 8 4.8624 4.5240 -0.6342 16 6 2.3275 3.8594 -0.1331 17 6 1.6426 5.1817 -0.4841 18 6 2.5107 6.1991 -1.1784 19 1 3.0082 6.9665 -0.6040 20 6 2.6700 6.1501 -2.5471 21 7 2.1765 5.1410 -3.2309 22 14 3.5869 7.5172 -3.4302 23 1 4.0394 8.5287 -2.4416 24 1 4.7655 6.9493 -4.1327 25 1 2.6842 8.1607 -4.4183 26 6 0.5767 5.7033 0.4818 27 6 0.1644 5.1296 -0.8754 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 5.0054 -1.7940 0.9996 32 1 4.7208 -2.2326 -0.7045 33 1 5.8845 -0.2568 -1.4849 34 1 6.9271 -1.0297 -0.2669 35 1 6.8816 1.3463 0.2171 36 1 5.9037 0.5297 1.4612 37 1 4.7683 2.5703 1.9031 38 1 2.3684 3.2251 -1.0186 39 1 1.7621 3.3540 0.6499 40 1 2.3505 5.0685 -4.1824 41 1 0.3637 5.1047 1.3673 42 1 0.5034 6.7827 0.6151 43 1 -0.1802 5.8315 -1.6348 44 1 -0.3200 4.1532 -0.8832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329475284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:36 Heat of formation + Delta-G solvation = 40.934354 kcal Electronic energy + Delta-G solvation = -29433.349111 eV Core-core repulsion = 25515.541332 eV Total energy + Delta-G solvation = -3917.807779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.30535 -37.70419 -36.54368 -36.02206 -35.01464 -34.77060 -32.01635 -31.93839 -31.41978 -28.86890 -27.87762 -27.82450 -25.32252 -23.85116 -22.87889 -21.04556 -20.63255 -19.84101 -19.48596 -18.55768 -17.01830 -16.85467 -16.52365 -16.17343 -15.77123 -15.11381 -14.81274 -14.64610 -14.48745 -14.27505 -14.16894 -13.56920 -13.14553 -13.06512 -12.89902 -12.62384 -12.57798 -12.03501 -11.98850 -11.90764 -11.68084 -11.53960 -11.36680 -11.05120 -10.94305 -10.90839 -10.83633 -10.80022 -10.42901 -10.21487 -10.04875 -9.86934 -9.65443 -9.59878 -9.35683 -9.24034 -8.75130 -8.42084 -7.93405 -6.05002 -4.18941 1.27804 1.62978 2.23852 2.95447 3.36239 3.44312 3.50197 3.56061 3.84910 4.09353 4.27496 4.43355 4.47411 4.68398 4.79696 4.81481 4.93378 5.04268 5.11808 5.23990 5.28730 5.30613 5.36934 5.41771 5.61922 5.62895 5.65273 5.80077 5.88146 5.93456 6.15681 6.29555 6.40634 6.52612 6.56136 6.62653 6.75907 6.84115 6.93658 7.14987 7.21520 7.40818 7.53791 7.88598 8.21874 8.33838 8.89234 9.56813 11.01959 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.005010 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.087818 B = 5587.167529 C = 6317.684016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.221 3.779 3 N -0.513 5.513 4 C 0.258 3.742 5 N -0.376 5.376 6 N -0.321 5.321 7 C 0.127 3.873 8 C -0.137 4.137 9 C -0.130 4.130 10 C 0.233 3.767 11 H 0.129 0.871 12 N -1.118 6.118 13 S 2.610 3.390 14 O -0.977 6.977 15 O -0.947 6.947 16 C -0.527 4.527 17 C 0.050 3.950 18 C -0.541 4.541 19 H 0.067 0.933 20 C 0.097 3.903 21 N -0.864 5.864 22 Si 0.889 3.111 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.284 1.284 26 C -0.207 4.207 27 C -0.141 4.141 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.410 0.590 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -15.535 6.138 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 N -0.240 5.240 4 C -0.021 4.021 5 N -0.168 5.168 6 N -0.150 5.150 7 C 0.005 3.995 8 C -0.176 4.176 9 C -0.169 4.169 10 C 0.121 3.879 11 H 0.146 0.854 12 N -0.870 5.870 13 S 2.709 3.291 14 O -0.968 6.968 15 O -0.936 6.936 16 C -0.661 4.661 17 C 0.047 3.953 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.110 4.110 21 N -0.498 5.498 22 Si 0.716 3.284 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.210 1.210 26 C -0.244 4.244 27 C -0.180 4.180 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.242 0.758 38 H 0.152 0.848 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.930 -15.216 5.798 17.013 hybrid contribution 0.172 -0.093 -0.291 0.351 sum 5.102 -15.309 5.506 17.051 Atomic orbital electron populations 1.20106 0.83970 1.04259 1.03538 1.24442 0.98252 0.85440 0.97881 1.70398 0.99555 1.30228 1.23841 1.25101 0.95813 0.84071 0.97144 1.50239 1.05640 1.05591 1.55287 1.77869 0.86649 1.22583 1.27883 1.21866 0.79653 0.94427 1.03516 1.22019 0.97926 0.95865 1.01810 1.22028 0.98291 0.95613 1.00975 1.19306 0.86909 0.85872 0.95818 0.85369 1.56235 1.83849 1.29852 1.17073 1.05100 0.78489 0.71394 0.74082 1.93478 1.88420 1.66006 1.48864 1.93517 1.64470 1.80276 1.55376 1.29789 1.18972 1.06612 1.10747 1.18257 0.88806 0.90454 0.97744 1.20648 1.30974 1.14009 0.92225 0.91466 1.24882 0.93553 0.95340 0.97206 1.69987 1.42544 1.29034 1.08212 0.86573 0.79645 0.82437 0.79740 1.19293 1.20445 1.20965 1.23105 1.08588 0.99774 0.92919 1.22470 0.99818 0.99726 0.95953 0.90055 0.89007 0.90302 0.89512 0.88642 0.89731 0.88003 0.88287 0.90228 0.75766 0.84771 0.87528 0.92828 0.91340 0.90029 0.89982 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.51 36.00 0.38 -0.34 16 2 C 0.22 3.47 8.15 -156.42 -1.27 2.19 16 3 N -0.51 -8.79 7.77 -8.02 -0.06 -8.85 16 4 C 0.26 3.88 7.30 -155.77 -1.14 2.74 16 5 N -0.38 -4.97 4.04 -58.29 -0.24 -5.21 16 6 N -0.32 -4.87 12.74 32.51 0.41 -4.45 16 7 C 0.13 1.05 7.30 -4.00 -0.03 1.02 16 8 C -0.14 -0.91 5.95 -26.49 -0.16 -1.07 16 9 C -0.13 -1.13 5.51 -26.43 -0.15 -1.27 16 10 C 0.23 3.18 3.08 -68.75 -0.21 2.97 16 11 H 0.13 1.90 7.50 -51.93 -0.39 1.51 16 12 N -1.12 -17.30 5.37 -5.59 -0.03 -17.33 16 13 S 2.61 56.27 4.60 -107.50 -0.49 55.78 16 14 O -0.98 -23.20 18.08 -57.54 -1.04 -24.24 16 15 O -0.95 -23.31 16.57 -57.54 -0.95 -24.26 16 16 C -0.53 -11.70 4.67 37.16 0.17 -11.53 16 17 C 0.05 1.25 1.64 -155.66 -0.26 0.99 16 18 C -0.54 -15.12 6.91 -34.44 -0.24 -15.36 16 19 H 0.07 1.94 7.82 -52.49 -0.41 1.52 16 20 C 0.10 2.71 5.39 -17.82 -0.10 2.62 16 21 N -0.86 -24.22 12.95 55.43 0.72 -23.50 16 22 Si 0.89 22.09 29.55 -169.99 -5.02 17.07 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.21 -4.66 9.88 -26.73 -0.26 -4.92 16 27 C -0.14 -3.30 9.49 -26.73 -0.25 -3.55 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.60 8.11 -51.93 -0.42 0.17 16 37 H 0.41 5.25 8.80 -34.47 -0.30 4.95 16 38 H 0.13 3.12 7.21 -51.92 -0.37 2.75 16 39 H 0.11 2.16 7.19 -51.92 -0.37 1.78 16 40 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 41 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 42 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 43 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -36.21 371.32 -11.10 -47.31 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.48 Total: 7.59 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -3.51 Total: -25.51 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.80 Total: -59.34 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.99 Total: -48.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 56.27 SS G_CDS: -0.49 Total: 55.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.21 -11.10 -47.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329475284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.242 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds